Wall clock time and date at job start Tue Mar 31 2020 00:08:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17395 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 H 1.09006 * 109.46869 * 194.72654 * 3 2 1 5 5 C 1.53003 * 109.47189 * 314.72450 * 3 2 1 6 6 C 1.53004 * 109.47123 * 185.00158 * 5 3 2 7 7 C 1.52999 * 109.46795 * 180.02562 * 6 5 3 8 8 N 1.46499 * 109.47615 * 74.72996 * 3 2 1 9 9 C 1.34773 * 120.00045 * 85.27008 * 8 3 2 10 10 O 1.21588 * 119.99966 * 354.72079 * 9 8 3 11 11 N 1.34775 * 119.99529 * 174.71850 * 9 8 3 12 12 C 1.46923 * 120.63669 * 5.03831 * 11 9 8 13 13 C 1.53191 * 108.77876 * 233.58417 * 12 11 9 14 14 C 1.53042 * 109.30936 * 305.36536 * 13 12 11 15 15 C 1.53038 * 109.53989 * 61.36381 * 14 13 12 16 16 H 1.08998 * 109.49964 * 58.58647 * 15 14 13 17 17 C 1.50705 * 109.49622 * 178.68078 * 15 14 13 18 18 H 1.07999 * 119.99680 * 0.02562 * 17 15 14 19 19 C 1.37870 * 119.99830 * 180.02562 * 17 15 14 20 20 N 1.31511 * 120.00441 * 359.97438 * 19 17 15 21 21 Si 1.86802 * 119.99879 * 180.02562 * 19 17 15 22 22 H 1.48500 * 109.47240 * 89.99622 * 21 19 17 23 23 H 1.48500 * 109.47068 * 209.99926 * 21 19 17 24 24 H 1.48500 * 109.46954 * 329.99872 * 21 19 17 25 25 C 1.46935 * 120.62794 * 184.75627 * 11 9 8 26 26 H 4.18732 * 15.03998 * 359.97438 * 4 2 1 27 27 H 1.09000 * 109.46862 * 305.00400 * 5 3 2 28 28 H 1.08998 * 109.46831 * 64.99901 * 5 3 2 29 29 H 1.09000 * 109.46925 * 299.99856 * 6 5 3 30 30 H 1.08993 * 109.46922 * 60.00567 * 6 5 3 31 31 H 1.09004 * 109.46788 * 180.02562 * 7 6 5 32 32 H 1.08996 * 109.47345 * 300.00331 * 7 6 5 33 33 H 1.09007 * 109.47229 * 60.00013 * 7 6 5 34 34 H 0.97001 * 119.99769 * 265.00151 * 8 3 2 35 35 H 1.09000 * 109.58442 * 353.37176 * 12 11 9 36 36 H 1.08998 * 109.59073 * 113.65073 * 12 11 9 37 37 H 1.09004 * 109.49670 * 65.31182 * 13 12 11 38 38 H 1.08996 * 109.49800 * 185.40992 * 13 12 11 39 39 H 1.09003 * 109.45781 * 181.38399 * 14 13 12 40 40 H 1.08993 * 109.45768 * 301.35234 * 14 13 12 41 41 H 0.96999 * 120.00212 * 180.02562 * 20 19 17 42 42 H 1.08999 * 109.58363 * 246.20783 * 25 11 9 43 43 H 1.09000 * 109.58469 * 6.62485 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0088 0.9948 0.2613 5 6 3.1564 -1.0142 1.0249 6 6 4.6813 -0.9255 1.1147 7 6 5.1917 -1.9408 2.1391 8 7 3.1346 -0.3629 -1.3324 9 6 3.2681 0.5835 -2.2826 10 8 2.8935 1.7198 -2.0658 11 7 3.8169 0.2704 -3.4730 12 6 4.1733 -1.1191 -3.7909 13 6 5.6416 -1.1646 -4.2252 14 6 5.8595 -0.1806 -5.3769 15 6 5.5393 1.2394 -4.9045 16 1 6.1769 1.4936 -4.0578 17 6 5.7851 2.2113 -6.0297 18 1 6.1344 1.8523 -6.9865 19 6 5.5641 3.5585 -5.8376 20 7 5.1382 3.9955 -4.6726 21 14 5.8682 4.7631 -7.2325 22 1 4.6238 4.9254 -8.0265 23 1 6.2728 6.0775 -6.6722 24 1 6.9496 4.2440 -8.1079 25 6 4.0646 1.3113 -4.4801 26 1 -1.0500 -0.0008 -0.0007 27 1 2.7216 -0.7956 2.0002 28 1 2.8685 -2.0190 0.7157 29 1 5.1160 -1.1441 0.1393 30 1 4.9691 0.0793 1.4240 31 1 6.2780 -1.8772 2.2034 32 1 4.7569 -1.7227 3.1145 33 1 4.9038 -2.9455 1.8295 34 1 3.3657 -1.2841 -1.5295 35 1 4.0338 -1.7431 -2.9082 36 1 3.5394 -1.4831 -4.5995 37 1 6.2783 -0.8877 -3.3848 38 1 5.8922 -2.1726 -4.5555 39 1 6.8981 -0.2289 -5.7042 40 1 5.2044 -0.4432 -6.2076 41 1 4.9824 4.9433 -4.5376 42 1 3.4237 1.1423 -5.3455 43 1 3.8534 2.2913 -4.0523 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000852274659.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:08:10 Heat of formation + Delta-G solvation = -8.563779 kcal Electronic energy + Delta-G solvation = -22292.057848 eV Core-core repulsion = 19144.475337 eV Total energy + Delta-G solvation = -3147.582511 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.39863 -38.86226 -37.55242 -35.38547 -34.44654 -33.75613 -32.98007 -31.47854 -29.72948 -27.02243 -26.12895 -24.86360 -23.44162 -22.05627 -21.85708 -20.43372 -19.53605 -18.89700 -18.17057 -17.46839 -16.64173 -16.37739 -15.94482 -15.63297 -15.24865 -15.19805 -15.10387 -14.68194 -14.44877 -14.22518 -13.81921 -13.55438 -13.40206 -12.88348 -12.85425 -12.64536 -12.52325 -12.28973 -12.22626 -11.97610 -11.86480 -11.62884 -11.56099 -11.50666 -11.18592 -11.07256 -10.94112 -10.81276 -10.51524 -10.37625 -9.29306 -8.09539 -6.26745 1.39665 1.41591 1.44199 1.52665 1.87722 2.10904 2.29164 2.42955 3.09013 3.21039 3.38602 3.93312 4.03462 4.05523 4.17057 4.20610 4.29431 4.45792 4.60377 4.67162 4.72029 4.80889 4.80995 4.86427 4.88808 5.00343 5.11560 5.13448 5.26797 5.27672 5.29511 5.30454 5.35397 5.49382 5.52972 5.57352 5.65036 5.89238 5.97692 6.15944 6.36594 6.66988 6.86510 7.11850 7.43395 7.67004 8.93856 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.019684 B = 0.004625 C = 0.004286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1422.139374 B = 6051.959795 C = 6531.486364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.231 4.231 3 C 0.268 3.732 4 H 0.075 0.925 5 C -0.103 4.103 6 C -0.127 4.127 7 C -0.146 4.146 8 N -0.722 5.722 9 C 0.695 3.305 10 O -0.638 6.638 11 N -0.626 5.626 12 C 0.109 3.891 13 C -0.124 4.124 14 C -0.105 4.105 15 C 0.040 3.960 16 H -0.013 1.013 17 C -0.536 4.536 18 H 0.063 0.937 19 C 0.009 3.991 20 N -0.916 5.916 21 Si 0.957 3.043 22 H -0.276 1.276 23 H -0.288 1.288 24 H -0.261 1.261 25 C 0.144 3.856 26 H 0.248 0.752 27 H 0.094 0.906 28 H 0.091 0.909 29 H 0.059 0.941 30 H 0.050 0.950 31 H 0.055 0.945 32 H 0.060 0.940 33 H 0.066 0.934 34 H 0.409 0.591 35 H 0.100 0.900 36 H 0.077 0.923 37 H 0.052 0.948 38 H 0.105 0.895 39 H 0.052 0.948 40 H 0.056 0.944 41 H 0.259 0.741 42 H 0.031 0.969 43 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.442 -17.096 10.328 20.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.233 4.233 3 C 0.163 3.837 4 H 0.093 0.907 5 C -0.141 4.141 6 C -0.164 4.164 7 C -0.203 4.203 8 N -0.382 5.382 9 C 0.397 3.603 10 O -0.519 6.519 11 N -0.362 5.362 12 C -0.013 4.013 13 C -0.162 4.162 14 C -0.143 4.143 15 C 0.020 3.980 16 H 0.005 0.995 17 C -0.575 4.575 18 H 0.081 0.919 19 C -0.190 4.190 20 N -0.554 5.554 21 Si 0.782 3.218 22 H -0.201 1.201 23 H -0.214 1.214 24 H -0.185 1.185 25 C 0.021 3.979 26 H 0.264 0.736 27 H 0.113 0.887 28 H 0.109 0.891 29 H 0.078 0.922 30 H 0.069 0.931 31 H 0.074 0.926 32 H 0.079 0.921 33 H 0.085 0.915 34 H 0.249 0.751 35 H 0.118 0.882 36 H 0.095 0.905 37 H 0.071 0.929 38 H 0.123 0.877 39 H 0.071 0.929 40 H 0.075 0.925 41 H 0.068 0.932 42 H 0.050 0.950 43 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -3.698 -16.140 10.567 19.643 hybrid contribution -0.014 1.156 -0.863 1.443 sum -3.712 -14.984 9.704 18.234 Atomic orbital electron populations 1.25745 0.96800 0.99923 0.97879 1.24028 0.95669 1.01319 1.02270 1.17750 0.83061 1.00454 0.82458 0.90680 1.21803 0.96151 0.98344 0.97774 1.21536 0.94441 1.00065 1.00387 1.21722 1.01007 0.98924 0.98641 1.45131 1.71277 1.10731 1.11047 1.16211 0.78571 0.84397 0.81155 1.90884 1.57561 1.22473 1.81029 1.47682 1.63783 1.10239 1.14475 1.21875 0.96714 0.80933 1.01778 1.21896 0.95462 1.00544 0.98279 1.21506 1.00492 0.94579 0.97695 1.18982 0.91261 0.93241 0.94485 0.99460 1.21539 1.44900 0.92162 0.98866 0.91909 1.25900 0.94745 1.00554 0.97782 1.70104 1.46120 1.14802 1.24410 0.85569 0.78719 0.78072 0.79397 1.20137 1.21380 1.18533 1.21669 0.97778 0.90728 0.87758 0.73603 0.88749 0.89079 0.92232 0.93103 0.92636 0.92054 0.91497 0.75065 0.88199 0.90460 0.92899 0.87667 0.92899 0.92533 0.93227 0.95041 0.90865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.65 19.25 74.32 1.43 -3.21 16 2 C -0.23 -6.74 12.84 31.13 0.40 -6.34 16 3 C 0.27 7.54 2.38 43.19 0.10 7.65 16 4 H 0.08 2.59 7.65 -2.38 -0.02 2.57 16 5 C -0.10 -1.86 4.71 30.60 0.14 -1.71 16 6 C -0.13 -2.33 5.82 30.60 0.18 -2.15 16 7 C -0.15 -1.98 9.91 71.98 0.71 -1.26 16 8 N -0.72 -21.90 4.41 -466.56 -2.06 -23.96 16 9 C 0.70 29.83 8.24 179.06 1.48 31.30 16 10 O -0.64 -34.87 15.49 -3.99 -0.06 -34.93 16 11 N -0.63 -25.85 2.97 -836.07 -2.48 -28.33 16 12 C 0.11 3.09 6.43 86.36 0.56 3.64 16 13 C -0.12 -3.55 6.08 30.67 0.19 -3.36 16 14 C -0.11 -4.04 5.10 30.62 0.16 -3.88 16 15 C 0.04 2.03 2.26 -11.32 -0.03 2.00 16 16 H -0.01 -0.75 8.14 -2.39 -0.02 -0.77 16 17 C -0.54 -29.92 8.56 25.60 0.22 -29.70 16 18 H 0.06 3.35 7.74 -2.91 -0.02 3.33 16 19 C 0.01 0.54 5.30 84.65 0.45 0.99 16 20 N -0.92 -56.96 11.41 21.44 0.24 -56.71 16 21 Si 0.96 44.93 29.54 68.60 2.03 46.96 16 22 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 23 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 24 H -0.26 -11.59 7.11 99.48 0.71 -10.88 16 25 C 0.14 7.40 5.41 86.50 0.47 7.87 16 26 H 0.25 3.99 7.80 -4.42 -0.03 3.96 16 27 H 0.09 1.48 8.14 -2.39 -0.02 1.47 16 28 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 29 H 0.06 1.19 7.75 -2.39 -0.02 1.17 16 30 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 31 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.06 0.74 8.14 -2.39 -0.02 0.73 16 33 H 0.07 0.74 8.14 -2.38 -0.02 0.72 16 34 H 0.41 9.24 6.06 -92.71 -0.56 8.67 16 35 H 0.10 2.02 5.57 -2.39 -0.01 2.00 16 36 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 37 H 0.05 1.62 8.14 -2.38 -0.02 1.60 16 38 H 0.11 2.14 8.14 -2.39 -0.02 2.12 16 39 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 40 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 41 H 0.26 15.54 8.31 -92.71 -0.77 14.77 16 42 H 0.03 1.62 8.14 -2.39 -0.02 1.60 16 43 H 0.07 4.55 5.18 -2.39 -0.01 4.54 16 Total: -1.00 -77.69 349.34 4.54 -73.15 By element: Atomic # 1 Polarization: 21.57 SS G_CDS: 0.42 Total: 21.98 kcal Atomic # 6 Polarization: -4.62 SS G_CDS: 6.45 Total: 1.84 kcal Atomic # 7 Polarization: -104.71 SS G_CDS: -4.29 Total: -109.00 kcal Atomic # 8 Polarization: -34.87 SS G_CDS: -0.06 Total: -34.93 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 2.03 Total: 46.96 kcal Total: -77.69 4.54 -73.15 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000852274659.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.582 kcal (2) G-P(sol) polarization free energy of solvation -77.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.146 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds