Wall clock time and date at job start Tue Mar 31 2020 00:08:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17407 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 H 1.08997 * 109.46862 * 159.44414 * 3 2 1 5 5 N 1.46494 * 109.47009 * 279.44333 * 3 2 1 6 6 C 1.34776 * 120.00310 * 275.00111 * 5 3 2 7 7 O 1.21585 * 119.99571 * 5.06889 * 6 5 3 8 8 N 1.34767 * 120.00277 * 185.07230 * 6 5 3 9 9 C 1.46921 * 120.63270 * 354.94013 * 8 6 5 10 10 C 1.53199 * 108.77919 * 126.41426 * 9 8 6 11 11 C 1.53035 * 109.33955 * 54.61875 * 10 9 8 12 12 C 1.53045 * 109.53739 * 298.68525 * 11 10 9 13 13 H 1.08998 * 109.49959 * 301.34750 * 12 11 10 14 14 C 1.50705 * 109.49496 * 181.28546 * 12 11 10 15 15 H 1.08001 * 119.99800 * 0.06330 * 14 12 11 16 16 C 1.37875 * 119.99859 * 180.34374 * 14 12 11 17 17 N 1.31513 * 120.00325 * 179.72688 * 16 14 12 18 18 Si 1.86809 * 119.99810 * 359.71962 * 16 14 12 19 19 H 1.48493 * 109.46888 * 90.00644 * 18 16 14 20 20 H 1.48502 * 109.46815 * 210.00151 * 18 16 14 21 21 H 1.48498 * 109.47140 * 330.00403 * 18 16 14 22 22 C 1.46927 * 120.63250 * 174.96124 * 8 6 5 23 23 C 1.53005 * 109.46907 * 39.44234 * 3 2 1 24 24 C 1.53002 * 109.47287 * 60.00291 * 23 3 2 25 25 C 1.52998 * 109.46690 * 179.97438 * 23 3 2 26 26 H 4.18739 * 15.04056 * 359.97438 * 4 2 1 27 27 H 0.97001 * 120.00337 * 94.99866 * 5 3 2 28 28 H 1.08999 * 109.58770 * 246.20042 * 9 8 6 29 29 H 1.08996 * 109.58722 * 6.62177 * 9 8 6 30 30 H 1.08997 * 109.49469 * 174.58829 * 10 9 8 31 31 H 1.09001 * 109.49050 * 294.68075 * 10 9 8 32 32 H 1.08995 * 109.48447 * 178.65231 * 11 10 9 33 33 H 1.08994 * 109.43505 * 58.68754 * 11 10 9 34 34 H 0.97000 * 120.00445 * 179.97438 * 17 16 14 35 35 H 1.09001 * 109.58904 * 113.79867 * 22 8 6 36 36 H 1.08999 * 109.70297 * 353.44332 * 22 8 6 37 37 H 1.09003 * 109.47171 * 300.00111 * 23 3 2 38 38 H 1.08997 * 109.47261 * 59.99344 * 24 23 3 39 39 H 1.08991 * 109.47327 * 179.97438 * 24 23 3 40 40 H 1.09006 * 109.46880 * 299.99897 * 24 23 3 41 41 H 1.09003 * 109.47541 * 300.00051 * 25 23 3 42 42 H 1.09000 * 109.47030 * 60.00301 * 25 23 3 43 43 H 1.09004 * 109.47028 * 180.02562 * 25 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 1 3.0089 0.9630 -0.3608 5 7 3.1345 -0.2257 1.3625 6 6 3.2627 0.8115 2.2135 7 8 2.8870 1.9194 1.8824 8 7 3.8074 0.6206 3.4313 9 6 4.1644 -0.7293 3.8884 10 6 5.6313 -0.7284 4.3304 11 6 5.8443 0.3667 5.3780 12 6 5.5231 1.7314 4.7643 13 1 6.1636 1.9009 3.8987 14 6 5.7635 2.8119 5.7870 15 1 6.1115 2.5517 6.7758 16 6 5.5334 4.1320 5.4623 17 7 5.7380 5.0745 6.3564 18 14 4.9313 4.5818 3.7521 19 1 3.4465 4.5770 3.7329 20 1 5.4265 5.9351 3.3931 21 1 5.4424 3.5912 2.7709 22 6 4.0551 1.7584 4.3273 23 6 3.1565 -1.1132 -0.9165 24 6 2.6465 -0.8767 -2.3395 25 6 4.6865 -1.1120 -0.9169 26 1 -1.0500 -0.0010 -0.0001 27 1 3.3655 -1.1222 1.6522 28 1 3.5298 -1.0102 4.7289 29 1 4.0291 -1.4391 3.0725 30 1 5.8819 -1.6977 4.7613 31 1 6.2706 -0.5364 3.4688 32 1 6.8818 0.3537 5.7117 33 1 5.1870 0.1875 6.2288 34 1 5.5765 6.0032 6.1279 35 1 3.4115 1.6803 5.2036 36 1 3.8470 2.6911 3.8031 37 1 2.7936 -2.0756 -0.5556 38 1 3.0093 0.0857 -2.7003 39 1 3.0105 -1.6699 -2.9924 40 1 1.5564 -0.8772 -2.3394 41 1 5.0491 -0.1496 -1.2780 42 1 5.0503 -1.2802 0.0967 43 1 5.0502 -1.9052 -1.5702 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000852304538.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:08:13 Heat of formation + Delta-G solvation = 22.320622 kcal Electronic energy + Delta-G solvation = -22614.991110 eV Core-core repulsion = 19468.747846 eV Total energy + Delta-G solvation = -3146.243263 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.21208 -37.95600 -36.58398 -33.76367 -32.94666 -32.40051 -31.76276 -30.43411 -27.35906 -26.80936 -25.21266 -24.17188 -22.04588 -21.07094 -20.14053 -18.95013 -18.60480 -17.65734 -16.76923 -16.33017 -15.43415 -14.98622 -14.78120 -14.31873 -14.08799 -13.89876 -13.79803 -13.31825 -12.96366 -12.88304 -12.75266 -12.47231 -12.36363 -12.16890 -11.69791 -11.35305 -11.31023 -11.12976 -11.04482 -10.64549 -10.51518 -10.39119 -10.12114 -10.07113 -9.78187 -9.69268 -9.22330 -9.18005 -9.07399 -8.56583 -7.97451 -6.08225 -4.09800 2.47993 2.83349 3.26248 3.41888 3.50151 3.54105 3.61687 4.14702 4.26570 4.45517 4.60909 4.67640 4.93491 5.10491 5.24518 5.29805 5.31809 5.40059 5.41956 5.49970 5.61268 5.64617 5.78970 5.82398 5.93717 5.97359 6.01699 6.08311 6.10965 6.17633 6.40496 6.53309 6.58961 6.61297 6.74331 6.88404 7.12503 7.31944 7.46789 7.61789 7.75275 8.25622 8.50068 8.92990 8.95281 9.53616 11.03698 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.020485 B = 0.005452 C = 0.004913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1366.498850 B = 5134.489547 C = 5698.262088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.185 4.185 3 C 0.275 3.725 4 H 0.106 0.894 5 N -0.744 5.744 6 C 0.703 3.297 7 O -0.587 6.587 8 N -0.623 5.623 9 C 0.116 3.884 10 C -0.136 4.136 11 C -0.099 4.099 12 C 0.004 3.996 13 H 0.030 0.970 14 C -0.516 4.516 15 H 0.077 0.923 16 C 0.074 3.926 17 N -0.897 5.897 18 Si 0.880 3.120 19 H -0.272 1.272 20 H -0.296 1.296 21 H -0.264 1.264 22 C 0.119 3.881 23 C -0.095 4.095 24 C -0.145 4.145 25 C -0.148 4.148 26 H 0.215 0.785 27 H 0.395 0.605 28 H 0.066 0.934 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.061 0.939 32 H 0.059 0.941 33 H 0.056 0.944 34 H 0.265 0.735 35 H 0.064 0.936 36 H 0.079 0.921 37 H 0.077 0.923 38 H 0.059 0.941 39 H 0.061 0.939 40 H 0.059 0.941 41 H 0.060 0.940 42 H 0.060 0.940 43 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.193 -17.006 -13.697 22.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.187 4.187 3 C 0.169 3.831 4 H 0.124 0.876 5 N -0.402 5.402 6 C 0.404 3.596 7 O -0.465 6.465 8 N -0.359 5.359 9 C -0.008 4.008 10 C -0.174 4.174 11 C -0.137 4.137 12 C -0.016 4.016 13 H 0.048 0.952 14 C -0.554 4.554 15 H 0.095 0.905 16 C -0.129 4.129 17 N -0.534 5.534 18 Si 0.710 3.290 19 H -0.199 1.199 20 H -0.224 1.224 21 H -0.189 1.189 22 C -0.002 4.002 23 C -0.114 4.114 24 C -0.203 4.203 25 C -0.205 4.205 26 H 0.232 0.768 27 H 0.232 0.768 28 H 0.084 0.916 29 H 0.082 0.918 30 H 0.083 0.917 31 H 0.080 0.920 32 H 0.078 0.922 33 H 0.075 0.925 34 H 0.075 0.925 35 H 0.082 0.918 36 H 0.097 0.903 37 H 0.095 0.905 38 H 0.078 0.922 39 H 0.080 0.920 40 H 0.078 0.922 41 H 0.079 0.921 42 H 0.079 0.921 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -5.422 -15.966 -13.868 21.832 hybrid contribution -0.584 -0.034 -0.635 0.863 sum -6.006 -16.000 -14.503 22.415 Atomic orbital electron populations 1.24871 0.95837 1.01490 0.99583 1.23560 0.94774 0.99785 1.00565 1.17694 0.83011 1.00462 0.81891 0.87589 1.45328 1.72217 1.10018 1.12607 1.15944 0.78713 0.84227 0.80676 1.90915 1.55480 1.23485 1.76623 1.47657 1.64284 1.08859 1.15147 1.21564 0.96927 0.83447 0.98857 1.21991 0.95283 0.99750 1.00405 1.21422 1.01227 0.94343 0.96722 1.19510 0.91032 0.94038 0.96990 0.95180 1.20958 1.45527 0.89526 0.99432 0.90466 1.25036 0.94538 0.96531 0.96807 1.69890 1.48657 1.00619 1.34228 0.86977 0.79669 0.77219 0.85111 1.19851 1.22395 1.18915 1.22503 0.99680 0.86914 0.91081 1.21330 0.96658 0.97888 0.95571 1.21796 1.01501 1.02210 0.94778 1.21845 0.93835 1.02438 1.02377 0.76820 0.76792 0.91551 0.91774 0.91707 0.91994 0.92217 0.92516 0.92523 0.91815 0.90300 0.90455 0.92157 0.92033 0.92193 0.92126 0.92136 0.92155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.48 19.25 29.55 0.57 -1.91 16 2 C -0.19 -2.57 11.57 -37.12 -0.43 -3.00 16 3 C 0.27 3.62 1.98 -70.72 -0.14 3.48 16 4 H 0.11 1.62 7.65 -51.93 -0.40 1.22 16 5 N -0.74 -10.64 4.26 -61.45 -0.26 -10.91 16 6 C 0.70 13.73 8.24 -86.93 -0.72 13.01 16 7 O -0.59 -14.20 15.50 5.29 0.08 -14.12 16 8 N -0.62 -11.85 2.97 -178.50 -0.53 -12.38 16 9 C 0.12 1.62 6.43 -3.71 -0.02 1.59 16 10 C -0.14 -1.95 6.08 -26.61 -0.16 -2.11 16 11 C -0.10 -1.85 5.11 -26.69 -0.14 -1.99 16 12 C 0.00 0.09 1.84 -91.65 -0.17 -0.07 16 13 H 0.03 0.75 7.21 -51.93 -0.37 0.38 16 14 C -0.52 -14.42 9.15 -34.44 -0.32 -14.73 16 15 H 0.08 2.29 7.99 -52.49 -0.42 1.87 16 16 C 0.07 2.16 5.45 -17.82 -0.10 2.07 16 17 N -0.90 -27.71 13.96 55.43 0.77 -26.94 16 18 Si 0.88 23.75 24.32 -169.99 -4.13 19.61 16 19 H -0.27 -7.51 6.91 56.52 0.39 -7.12 16 20 H -0.30 -7.92 7.11 56.52 0.40 -7.52 16 21 H -0.26 -7.12 6.54 56.52 0.37 -6.75 16 22 C 0.12 2.74 5.09 -3.71 -0.02 2.73 16 23 C -0.10 -0.88 2.53 -90.62 -0.23 -1.11 16 24 C -0.15 -1.19 8.94 37.16 0.33 -0.86 16 25 C -0.15 -1.29 9.03 37.16 0.34 -0.96 16 26 H 0.21 1.88 7.80 -54.09 -0.42 1.45 16 27 H 0.39 4.44 5.85 -40.82 -0.24 4.20 16 28 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 29 H 0.06 0.68 5.57 -51.93 -0.29 0.39 16 30 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 32 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 33 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 35 H 0.06 1.45 8.14 -51.93 -0.42 1.03 16 36 H 0.08 2.06 2.34 -51.93 -0.12 1.94 16 37 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 39 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.06 0.52 7.23 -51.93 -0.38 0.14 16 41 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.06 0.55 7.45 -51.93 -0.39 0.17 16 43 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 LS Contribution 339.19 15.07 5.11 5.11 Total: -1.00 -34.67 339.19 -7.01 -41.68 By element: Atomic # 1 Polarization: 8.66 SS G_CDS: -6.85 Total: 1.80 kcal Atomic # 6 Polarization: -2.67 SS G_CDS: -1.20 Total: -3.87 kcal Atomic # 7 Polarization: -50.20 SS G_CDS: -0.02 Total: -50.22 kcal Atomic # 8 Polarization: -14.20 SS G_CDS: 0.08 Total: -14.12 kcal Atomic # 14 Polarization: 23.75 SS G_CDS: -4.13 Total: 19.61 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -34.67 -7.01 -41.68 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000852304538.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.003 kcal (2) G-P(sol) polarization free energy of solvation -34.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.682 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds