Wall clock time and date at job start Tue Mar 31 2020 00:08:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17407 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 H 1.08997 * 109.46862 * 159.44414 * 3 2 1 5 5 N 1.46494 * 109.47009 * 279.44333 * 3 2 1 6 6 C 1.34776 * 120.00310 * 275.00111 * 5 3 2 7 7 O 1.21585 * 119.99571 * 5.06889 * 6 5 3 8 8 N 1.34767 * 120.00277 * 185.07230 * 6 5 3 9 9 C 1.46921 * 120.63270 * 354.94013 * 8 6 5 10 10 C 1.53199 * 108.77919 * 126.41426 * 9 8 6 11 11 C 1.53035 * 109.33955 * 54.61875 * 10 9 8 12 12 C 1.53045 * 109.53739 * 298.68525 * 11 10 9 13 13 H 1.08998 * 109.49959 * 301.34750 * 12 11 10 14 14 C 1.50705 * 109.49496 * 181.28546 * 12 11 10 15 15 H 1.08001 * 119.99800 * 0.06330 * 14 12 11 16 16 C 1.37875 * 119.99859 * 180.34374 * 14 12 11 17 17 N 1.31513 * 120.00325 * 179.72688 * 16 14 12 18 18 Si 1.86809 * 119.99810 * 359.71962 * 16 14 12 19 19 H 1.48493 * 109.46888 * 90.00644 * 18 16 14 20 20 H 1.48502 * 109.46815 * 210.00151 * 18 16 14 21 21 H 1.48498 * 109.47140 * 330.00403 * 18 16 14 22 22 C 1.46927 * 120.63250 * 174.96124 * 8 6 5 23 23 C 1.53005 * 109.46907 * 39.44234 * 3 2 1 24 24 C 1.53002 * 109.47287 * 60.00291 * 23 3 2 25 25 C 1.52998 * 109.46690 * 179.97438 * 23 3 2 26 26 H 4.18739 * 15.04056 * 359.97438 * 4 2 1 27 27 H 0.97001 * 120.00337 * 94.99866 * 5 3 2 28 28 H 1.08999 * 109.58770 * 246.20042 * 9 8 6 29 29 H 1.08996 * 109.58722 * 6.62177 * 9 8 6 30 30 H 1.08997 * 109.49469 * 174.58829 * 10 9 8 31 31 H 1.09001 * 109.49050 * 294.68075 * 10 9 8 32 32 H 1.08995 * 109.48447 * 178.65231 * 11 10 9 33 33 H 1.08994 * 109.43505 * 58.68754 * 11 10 9 34 34 H 0.97000 * 120.00445 * 179.97438 * 17 16 14 35 35 H 1.09001 * 109.58904 * 113.79867 * 22 8 6 36 36 H 1.08999 * 109.70297 * 353.44332 * 22 8 6 37 37 H 1.09003 * 109.47171 * 300.00111 * 23 3 2 38 38 H 1.08997 * 109.47261 * 59.99344 * 24 23 3 39 39 H 1.08991 * 109.47327 * 179.97438 * 24 23 3 40 40 H 1.09006 * 109.46880 * 299.99897 * 24 23 3 41 41 H 1.09003 * 109.47541 * 300.00051 * 25 23 3 42 42 H 1.09000 * 109.47030 * 60.00301 * 25 23 3 43 43 H 1.09004 * 109.47028 * 180.02562 * 25 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 1 3.0089 0.9630 -0.3608 5 7 3.1345 -0.2257 1.3625 6 6 3.2627 0.8115 2.2135 7 8 2.8870 1.9194 1.8824 8 7 3.8074 0.6206 3.4313 9 6 4.1644 -0.7293 3.8884 10 6 5.6313 -0.7284 4.3304 11 6 5.8443 0.3667 5.3780 12 6 5.5231 1.7314 4.7643 13 1 6.1636 1.9009 3.8987 14 6 5.7635 2.8119 5.7870 15 1 6.1115 2.5517 6.7758 16 6 5.5334 4.1320 5.4623 17 7 5.7380 5.0745 6.3564 18 14 4.9313 4.5818 3.7521 19 1 3.4465 4.5770 3.7329 20 1 5.4265 5.9351 3.3931 21 1 5.4424 3.5912 2.7709 22 6 4.0551 1.7584 4.3273 23 6 3.1565 -1.1132 -0.9165 24 6 2.6465 -0.8767 -2.3395 25 6 4.6865 -1.1120 -0.9169 26 1 -1.0500 -0.0010 -0.0001 27 1 3.3655 -1.1222 1.6522 28 1 3.5298 -1.0102 4.7289 29 1 4.0291 -1.4391 3.0725 30 1 5.8819 -1.6977 4.7613 31 1 6.2706 -0.5364 3.4688 32 1 6.8818 0.3537 5.7117 33 1 5.1870 0.1875 6.2288 34 1 5.5765 6.0032 6.1279 35 1 3.4115 1.6803 5.2036 36 1 3.8470 2.6911 3.8031 37 1 2.7936 -2.0756 -0.5556 38 1 3.0093 0.0857 -2.7003 39 1 3.0105 -1.6699 -2.9924 40 1 1.5564 -0.8772 -2.3394 41 1 5.0491 -0.1496 -1.2780 42 1 5.0503 -1.2802 0.0967 43 1 5.0502 -1.9052 -1.5702 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000852304538.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:08:13 Heat of formation + Delta-G solvation = -0.912094 kcal Electronic energy + Delta-G solvation = -22615.998556 eV Core-core repulsion = 19468.747846 eV Total energy + Delta-G solvation = -3147.250709 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.62946 -39.19881 -37.93321 -35.48685 -34.36358 -33.62517 -33.15092 -32.14005 -28.07989 -27.94037 -26.98017 -25.71006 -23.58073 -22.03660 -21.60366 -20.37788 -19.73464 -19.02432 -18.76432 -17.65294 -16.83924 -16.51967 -15.97072 -15.69363 -15.51892 -15.36019 -15.04179 -14.82067 -14.66007 -14.14946 -13.98145 -13.77211 -13.56849 -13.19032 -12.99115 -12.91737 -12.49302 -12.33907 -12.13949 -12.01485 -11.93759 -11.81723 -11.59593 -11.57636 -11.32525 -11.10631 -11.04937 -10.96119 -10.80826 -10.50179 -9.49335 -8.40299 -6.41399 1.21327 1.27209 1.32215 1.40239 1.84470 1.96921 2.13836 2.19901 2.93506 3.00077 3.36413 3.78535 3.93216 3.96273 4.04868 4.13921 4.23157 4.42612 4.45083 4.52693 4.61819 4.63348 4.71771 4.79210 4.86226 4.93246 4.97423 4.99077 5.07883 5.13265 5.16046 5.21389 5.29829 5.39263 5.40132 5.44613 5.53324 5.61862 5.69331 5.94189 6.26299 6.64151 6.67532 6.94239 7.24335 7.48046 8.75818 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.020485 B = 0.005452 C = 0.004913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1366.498850 B = 5134.489547 C = 5698.262088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.226 4.226 3 C 0.271 3.729 4 H 0.076 0.924 5 N -0.720 5.720 6 C 0.697 3.303 7 O -0.642 6.642 8 N -0.626 5.626 9 C 0.108 3.892 10 C -0.125 4.125 11 C -0.098 4.098 12 C 0.004 3.996 13 H 0.015 0.985 14 C -0.510 4.510 15 H 0.053 0.947 16 C 0.031 3.969 17 N -0.937 5.937 18 Si 0.937 3.063 19 H -0.287 1.287 20 H -0.293 1.293 21 H -0.268 1.268 22 C 0.126 3.874 23 C -0.084 4.084 24 C -0.143 4.143 25 C -0.147 4.147 26 H 0.246 0.754 27 H 0.413 0.587 28 H 0.083 0.917 29 H 0.106 0.894 30 H 0.110 0.890 31 H 0.060 0.940 32 H 0.057 0.943 33 H 0.059 0.941 34 H 0.267 0.733 35 H 0.060 0.940 36 H 0.046 0.954 37 H 0.097 0.903 38 H 0.051 0.949 39 H 0.083 0.917 40 H 0.054 0.946 41 H 0.044 0.956 42 H 0.058 0.942 43 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.658 -20.742 -15.135 26.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.228 4.228 3 C 0.166 3.834 4 H 0.094 0.906 5 N -0.379 5.379 6 C 0.398 3.602 7 O -0.524 6.524 8 N -0.362 5.362 9 C -0.013 4.013 10 C -0.163 4.163 11 C -0.135 4.135 12 C -0.015 4.015 13 H 0.033 0.967 14 C -0.549 4.549 15 H 0.071 0.929 16 C -0.167 4.167 17 N -0.577 5.577 18 Si 0.767 3.233 19 H -0.214 1.214 20 H -0.221 1.221 21 H -0.194 1.194 22 C 0.003 3.997 23 C -0.103 4.103 24 C -0.201 4.201 25 C -0.204 4.204 26 H 0.262 0.738 27 H 0.253 0.747 28 H 0.101 0.899 29 H 0.124 0.876 30 H 0.128 0.872 31 H 0.079 0.921 32 H 0.076 0.924 33 H 0.077 0.923 34 H 0.076 0.924 35 H 0.078 0.922 36 H 0.064 0.936 37 H 0.115 0.885 38 H 0.070 0.930 39 H 0.102 0.898 40 H 0.073 0.927 41 H 0.063 0.937 42 H 0.077 0.923 43 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -5.871 -19.787 -15.325 25.707 hybrid contribution -0.478 1.074 -0.164 1.187 sum -6.350 -18.713 -15.489 25.108 Atomic orbital electron populations 1.25719 0.96776 0.99989 0.97933 1.23886 0.95508 1.01253 1.02122 1.17857 0.83196 1.00778 0.81532 0.90611 1.45100 1.70965 1.09535 1.12279 1.16178 0.78457 0.84451 0.81081 1.90874 1.57717 1.26039 1.77729 1.47562 1.64286 1.09727 1.14609 1.21973 0.96977 0.81303 1.01052 1.21938 0.95419 0.99980 0.99004 1.21366 1.01146 0.92998 0.98013 1.19444 0.91180 0.95609 0.95314 0.96707 1.21341 1.43443 0.90662 0.99405 0.92868 1.25574 0.95297 0.96960 0.98900 1.69975 1.50930 1.01063 1.35722 0.86090 0.78135 0.76740 0.82330 1.21429 1.22060 1.19353 1.21990 0.98949 0.87442 0.91305 1.21315 0.96880 0.96987 0.95104 1.21795 1.01205 1.02627 0.94479 1.21861 0.93346 1.02487 1.02742 0.73794 0.74695 0.89894 0.87634 0.87220 0.92099 0.92388 0.92272 0.92363 0.92214 0.93631 0.88515 0.93005 0.89829 0.92669 0.93659 0.92327 0.89829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.26 19.25 74.32 1.43 -2.82 16 2 C -0.23 -5.98 11.57 31.12 0.36 -5.62 16 3 C 0.27 6.86 1.98 43.19 0.09 6.94 16 4 H 0.08 2.38 7.65 -2.39 -0.02 2.36 16 5 N -0.72 -19.20 4.26 -466.58 -1.99 -21.18 16 6 C 0.70 26.69 8.24 179.06 1.47 28.17 16 7 O -0.64 -31.67 15.50 -3.99 -0.06 -31.73 16 8 N -0.63 -22.87 2.97 -836.92 -2.49 -25.35 16 9 C 0.11 2.59 6.43 86.37 0.56 3.15 16 10 C -0.13 -3.07 6.08 30.67 0.19 -2.88 16 11 C -0.10 -3.45 5.11 30.62 0.16 -3.29 16 12 C 0.00 0.20 1.84 -11.46 -0.02 0.18 16 13 H 0.01 0.74 7.21 -2.39 -0.02 0.72 16 14 C -0.51 -29.13 9.15 25.60 0.23 -28.89 16 15 H 0.05 3.24 7.99 -2.91 -0.02 3.22 16 16 C 0.03 1.90 5.45 84.65 0.46 2.36 16 17 N -0.94 -59.59 13.96 21.45 0.30 -59.29 16 18 Si 0.94 51.44 24.32 68.60 1.67 53.10 16 19 H -0.29 -16.29 6.91 99.48 0.69 -15.60 16 20 H -0.29 -15.68 7.11 99.48 0.71 -14.97 16 21 H -0.27 -14.70 6.54 99.48 0.65 -14.05 16 22 C 0.13 5.83 5.09 86.36 0.44 6.27 16 23 C -0.08 -1.34 2.53 -10.79 -0.03 -1.36 16 24 C -0.14 -2.05 8.94 71.98 0.64 -1.41 16 25 C -0.15 -2.18 9.03 71.98 0.65 -1.53 16 26 H 0.25 3.56 7.80 -4.42 -0.03 3.52 16 27 H 0.41 7.72 5.85 -92.71 -0.54 7.17 16 28 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 29 H 0.11 1.66 5.57 -2.39 -0.01 1.65 16 30 H 0.11 1.83 8.14 -2.39 -0.02 1.81 16 31 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 32 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 33 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 34 H 0.27 16.07 8.31 -92.71 -0.77 15.30 16 35 H 0.06 2.75 8.14 -2.39 -0.02 2.73 16 36 H 0.05 2.43 2.34 -2.39 -0.01 2.43 16 37 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 38 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 39 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 40 H 0.05 0.85 7.23 -2.38 -0.02 0.83 16 41 H 0.04 0.81 8.14 -2.39 -0.02 0.79 16 42 H 0.06 0.89 7.45 -2.39 -0.02 0.87 16 43 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 Total: -1.00 -79.84 339.19 4.43 -75.41 By element: Atomic # 1 Polarization: 9.43 SS G_CDS: 0.37 Total: 9.80 kcal Atomic # 6 Polarization: -7.38 SS G_CDS: 6.63 Total: -0.75 kcal Atomic # 7 Polarization: -101.65 SS G_CDS: -4.18 Total: -105.83 kcal Atomic # 8 Polarization: -31.67 SS G_CDS: -0.06 Total: -31.73 kcal Atomic # 14 Polarization: 51.44 SS G_CDS: 1.67 Total: 53.10 kcal Total: -79.84 4.43 -75.41 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000852304538.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.495 kcal (2) G-P(sol) polarization free energy of solvation -79.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.407 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds