Wall clock time and date at job start Tue Mar 31 2020 00:08:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17390 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 H 1.08998 * 109.47494 * 66.56606 * 3 2 1 5 5 N 1.46497 * 109.47089 * 306.56213 * 3 2 1 6 6 C 1.34780 * 120.00277 * 155.00164 * 5 3 2 7 7 O 1.21590 * 119.99553 * 4.97586 * 6 5 3 8 8 N 1.34774 * 120.00029 * 184.69800 * 6 5 3 9 9 C 1.46925 * 120.63536 * 355.03912 * 8 6 5 10 10 C 1.53185 * 108.77688 * 233.58664 * 9 8 6 11 11 C 1.53048 * 109.31358 * 305.36339 * 10 9 8 12 12 C 1.53033 * 109.53766 * 61.36368 * 11 10 9 13 13 H 1.08998 * 109.49829 * 58.59049 * 12 11 10 14 14 C 1.50695 * 109.49981 * 178.68410 * 12 11 10 15 15 H 1.08005 * 119.99960 * 35.05070 * 14 12 11 16 16 C 1.37872 * 120.00527 * 215.04548 * 14 12 11 17 17 N 1.31518 * 120.00277 * 174.98493 * 16 14 12 18 18 Si 1.86804 * 119.99992 * 354.99023 * 16 14 12 19 19 H 1.48499 * 109.47022 * 94.95948 * 18 16 14 20 20 H 1.48497 * 109.47217 * 214.96326 * 18 16 14 21 21 H 1.48500 * 109.46921 * 334.96536 * 18 16 14 22 22 C 1.46927 * 120.62755 * 174.75617 * 8 6 5 23 23 C 1.53006 * 109.47158 * 186.56231 * 3 2 1 24 24 C 1.52993 * 109.46948 * 299.99881 * 23 3 2 25 25 C 1.52999 * 109.46950 * 60.00061 * 23 3 2 26 26 H 4.18738 * 15.03788 * 0.02562 * 4 2 1 27 27 H 0.97005 * 120.00554 * 335.00097 * 5 3 2 28 28 H 1.08998 * 109.58017 * 353.37161 * 9 8 6 29 29 H 1.08998 * 109.58762 * 113.64978 * 9 8 6 30 30 H 1.09007 * 109.50138 * 65.31359 * 10 9 8 31 31 H 1.09001 * 109.49955 * 185.41359 * 10 9 8 32 32 H 1.08995 * 109.45819 * 181.38569 * 11 10 9 33 33 H 1.08996 * 109.45562 * 301.36074 * 11 10 9 34 34 H 0.97003 * 120.00293 * 180.02562 * 17 16 14 35 35 H 1.08997 * 109.58953 * 246.20145 * 22 8 6 36 36 H 1.09006 * 109.59169 * 6.63430 * 22 8 6 37 37 H 1.08999 * 109.46839 * 179.97438 * 23 3 2 38 38 H 1.09002 * 109.47100 * 179.97438 * 24 23 3 39 39 H 1.08998 * 109.47426 * 299.99455 * 24 23 3 40 40 H 1.09005 * 109.47262 * 60.00287 * 24 23 3 41 41 H 1.09002 * 109.47247 * 59.99900 * 25 23 3 42 42 H 1.08999 * 109.47542 * 180.02562 * 25 23 3 43 43 H 1.09005 * 109.47225 * 299.99692 * 25 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 1 3.0095 -0.4079 -0.9429 5 7 3.1346 -0.8219 1.1094 6 6 4.3569 -1.3860 1.0427 7 8 5.0897 -1.1396 0.1043 8 7 4.7689 -2.2187 2.0190 9 6 3.9434 -2.4371 3.2146 10 6 4.7947 -2.1633 4.4584 11 6 6.0611 -3.0209 4.4038 12 6 6.8797 -2.6467 3.1661 13 1 7.1356 -1.5879 3.2057 14 6 8.1421 -3.4688 3.1305 15 1 8.1324 -4.4889 3.4852 16 6 9.3095 -2.9189 2.6450 17 7 10.4324 -3.6011 2.7047 18 14 9.2965 -1.2048 1.9026 19 1 9.6770 -0.2130 2.9403 20 1 10.2670 -1.1441 0.7803 21 1 7.9351 -0.8947 1.3971 22 6 6.0493 -2.9302 1.9051 23 6 3.1553 1.4340 0.1649 24 6 2.6450 2.2930 -0.9937 25 6 2.6451 2.0075 1.4883 26 1 -1.0500 0.0003 -0.0006 27 1 2.5786 -0.9606 1.8920 28 1 3.0907 -1.7583 3.1988 29 1 3.5895 -3.4679 3.2311 30 1 5.0702 -1.1090 4.4858 31 1 4.2238 -2.4140 5.3524 32 1 6.6568 -2.8462 5.2997 33 1 5.7845 -4.0739 4.3511 34 1 11.2538 -3.2141 2.3635 35 1 5.8659 -4.0011 1.8183 36 1 6.5868 -2.5769 1.0250 37 1 4.2453 1.4344 0.1653 38 1 3.0075 3.3142 -0.8761 39 1 3.0085 1.8845 -1.9366 40 1 1.5549 2.2925 -0.9938 41 1 3.0087 1.3954 2.3138 42 1 3.0075 3.0287 1.6057 43 1 1.5550 2.0070 1.4883 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000852304541.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:08:23 Heat of formation + Delta-G solvation = 15.894219 kcal Electronic energy + Delta-G solvation = -22530.143066 eV Core-core repulsion = 19383.621133 eV Total energy + Delta-G solvation = -3146.521933 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.20238 -37.93292 -36.49179 -33.74167 -32.82875 -32.42222 -31.71793 -30.39604 -27.31516 -26.80685 -25.20063 -24.14435 -21.88131 -21.24141 -19.96866 -19.13459 -18.45001 -17.40884 -16.73054 -16.13827 -15.61242 -15.02119 -14.66632 -14.27239 -14.06648 -13.83752 -13.70164 -13.37890 -12.92627 -12.67144 -12.62307 -12.46378 -12.24363 -12.19009 -11.69063 -11.29085 -11.12668 -11.07664 -10.93513 -10.75408 -10.59923 -10.54206 -10.42456 -10.02976 -9.74170 -9.65247 -9.33082 -9.07381 -8.99066 -8.58919 -7.93072 -6.08598 -4.09379 2.27950 2.60853 3.25315 3.35216 3.46019 3.55058 3.59832 4.06586 4.19050 4.47350 4.79197 4.90288 4.98856 5.13279 5.22829 5.35398 5.43513 5.50931 5.54511 5.59199 5.69200 5.75774 5.81150 5.84323 5.99393 5.99836 6.14223 6.17498 6.24858 6.28909 6.42068 6.57552 6.64468 6.68482 6.76949 6.95615 7.24950 7.33396 7.34962 7.44447 7.77586 8.27609 8.50930 8.93710 8.97316 9.55259 11.03719 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.021613 B = 0.005208 C = 0.004624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1295.213545 B = 5374.822550 C = 6054.046964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.182 4.182 3 C 0.278 3.722 4 H 0.106 0.894 5 N -0.747 5.747 6 C 0.704 3.296 7 O -0.588 6.588 8 N -0.624 5.624 9 C 0.116 3.884 10 C -0.137 4.137 11 C -0.103 4.103 12 C 0.007 3.993 13 H 0.035 0.965 14 C -0.514 4.514 15 H 0.074 0.926 16 C 0.076 3.924 17 N -0.897 5.897 18 Si 0.866 3.134 19 H -0.281 1.281 20 H -0.288 1.288 21 H -0.249 1.249 22 C 0.128 3.872 23 C -0.105 4.105 24 C -0.144 4.144 25 C -0.144 4.144 26 H 0.219 0.781 27 H 0.395 0.605 28 H 0.062 0.938 29 H 0.065 0.935 30 H 0.060 0.940 31 H 0.063 0.937 32 H 0.059 0.941 33 H 0.053 0.947 34 H 0.264 0.736 35 H 0.058 0.942 36 H 0.084 0.916 37 H 0.089 0.911 38 H 0.057 0.943 39 H 0.057 0.943 40 H 0.055 0.945 41 H 0.055 0.945 42 H 0.054 0.946 43 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.434 8.711 -1.471 22.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.183 4.183 3 C 0.173 3.827 4 H 0.124 0.876 5 N -0.405 5.405 6 C 0.406 3.594 7 O -0.466 6.466 8 N -0.360 5.360 9 C -0.008 4.008 10 C -0.175 4.175 11 C -0.141 4.141 12 C -0.013 4.013 13 H 0.053 0.947 14 C -0.552 4.552 15 H 0.093 0.907 16 C -0.126 4.126 17 N -0.534 5.534 18 Si 0.693 3.307 19 H -0.207 1.207 20 H -0.214 1.214 21 H -0.173 1.173 22 C 0.007 3.993 23 C -0.125 4.125 24 C -0.202 4.202 25 C -0.201 4.201 26 H 0.236 0.764 27 H 0.231 0.769 28 H 0.080 0.920 29 H 0.083 0.917 30 H 0.078 0.922 31 H 0.082 0.918 32 H 0.078 0.922 33 H 0.072 0.928 34 H 0.074 0.926 35 H 0.077 0.923 36 H 0.102 0.898 37 H 0.107 0.893 38 H 0.077 0.923 39 H 0.076 0.924 40 H 0.074 0.926 41 H 0.074 0.926 42 H 0.073 0.927 43 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -19.646 8.843 -2.219 21.658 hybrid contribution -0.352 0.792 0.035 0.867 sum -19.998 9.635 -2.184 22.305 Atomic orbital electron populations 1.24903 0.95760 1.00596 0.99607 1.22978 0.94066 1.00163 1.01052 1.17598 0.82412 0.91178 0.91539 0.87641 1.45341 1.17955 1.55363 1.21804 1.15901 0.81304 0.79000 0.83229 1.90907 1.54413 1.65974 1.35339 1.47754 1.23305 1.46395 1.18564 1.21536 0.92784 1.00607 0.85837 1.22004 0.98192 1.01194 0.96099 1.21548 0.94128 0.98224 1.00177 1.19556 0.94225 0.97415 0.90142 0.94690 1.20900 0.91158 1.00548 1.42628 0.90741 1.25058 0.95352 0.97470 0.94762 1.69908 0.99240 1.38189 1.46051 0.86997 0.79429 0.84958 0.79342 1.20671 1.21415 1.17273 1.22489 0.80234 0.94371 1.02229 1.21528 1.01916 0.93116 0.95964 1.21799 1.01029 0.99533 0.97852 1.21802 1.00726 1.00664 0.96899 0.76442 0.76904 0.91963 0.91691 0.92161 0.91840 0.92211 0.92783 0.92598 0.92348 0.89782 0.89275 0.92346 0.92367 0.92619 0.92571 0.92653 0.92808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.66 19.25 29.55 0.57 -1.09 16 2 C -0.18 -1.97 10.20 -37.12 -0.38 -2.35 16 3 C 0.28 3.55 2.23 -70.72 -0.16 3.40 16 4 H 0.11 1.52 7.65 -51.93 -0.40 1.12 16 5 N -0.75 -10.41 4.20 -61.44 -0.26 -10.67 16 6 C 0.70 13.01 8.26 -86.92 -0.72 12.30 16 7 O -0.59 -13.26 15.43 5.29 0.08 -13.18 16 8 N -0.62 -11.34 2.97 -178.23 -0.53 -11.86 16 9 C 0.12 1.61 6.39 -3.71 -0.02 1.59 16 10 C -0.14 -2.00 6.08 -26.61 -0.16 -2.17 16 11 C -0.10 -1.93 5.15 -26.69 -0.14 -2.07 16 12 C 0.01 0.15 1.79 -91.43 -0.16 -0.01 16 13 H 0.03 0.85 5.59 -51.93 -0.29 0.56 16 14 C -0.51 -14.11 8.86 -34.44 -0.31 -14.42 16 15 H 0.07 2.19 8.06 -52.48 -0.42 1.77 16 16 C 0.08 2.20 5.47 -17.82 -0.10 2.10 16 17 N -0.90 -27.38 13.96 55.43 0.77 -26.61 16 18 Si 0.87 22.27 26.64 -169.99 -4.53 17.74 16 19 H -0.28 -7.09 7.11 56.52 0.40 -6.69 16 20 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 21 H -0.25 -6.48 6.00 56.52 0.34 -6.14 16 22 C 0.13 2.78 5.56 -3.48 -0.02 2.76 16 23 C -0.11 -1.27 2.90 -90.62 -0.26 -1.53 16 24 C -0.14 -1.45 8.94 37.15 0.33 -1.12 16 25 C -0.14 -1.53 8.78 37.16 0.33 -1.20 16 26 H 0.22 1.10 7.80 -54.09 -0.42 0.68 16 27 H 0.39 4.60 6.07 -40.82 -0.25 4.35 16 28 H 0.06 0.68 5.64 -51.93 -0.29 0.39 16 29 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.06 0.92 8.14 -51.92 -0.42 0.50 16 31 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 32 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 33 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 35 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 36 H 0.08 2.08 5.93 -51.93 -0.31 1.77 16 37 H 0.09 1.32 8.10 -51.93 -0.42 0.89 16 38 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.05 0.52 7.23 -51.93 -0.38 0.14 16 41 H 0.06 0.64 7.60 -51.93 -0.39 0.24 16 42 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.05 0.52 7.23 -51.93 -0.38 0.15 16 LS Contribution 341.76 15.07 5.15 5.15 Total: -1.00 -32.59 341.76 -7.46 -40.04 By element: Atomic # 1 Polarization: 10.15 SS G_CDS: -6.95 Total: 3.20 kcal Atomic # 6 Polarization: -2.62 SS G_CDS: -1.20 Total: -3.82 kcal Atomic # 7 Polarization: -49.13 SS G_CDS: -0.01 Total: -49.14 kcal Atomic # 8 Polarization: -13.26 SS G_CDS: 0.08 Total: -13.18 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -4.53 Total: 17.74 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -32.59 -7.46 -40.04 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000852304541.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.938 kcal (2) G-P(sol) polarization free energy of solvation -32.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.044 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds