Wall clock time and date at job start Tue Mar 31 2020 00:08:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17390 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 H 1.08998 * 109.47494 * 66.56606 * 3 2 1 5 5 N 1.46497 * 109.47089 * 306.56213 * 3 2 1 6 6 C 1.34780 * 120.00277 * 155.00164 * 5 3 2 7 7 O 1.21590 * 119.99553 * 4.97586 * 6 5 3 8 8 N 1.34774 * 120.00029 * 184.69800 * 6 5 3 9 9 C 1.46925 * 120.63536 * 355.03912 * 8 6 5 10 10 C 1.53185 * 108.77688 * 233.58664 * 9 8 6 11 11 C 1.53048 * 109.31358 * 305.36339 * 10 9 8 12 12 C 1.53033 * 109.53766 * 61.36368 * 11 10 9 13 13 H 1.08998 * 109.49829 * 58.59049 * 12 11 10 14 14 C 1.50695 * 109.49981 * 178.68410 * 12 11 10 15 15 H 1.08005 * 119.99960 * 35.05070 * 14 12 11 16 16 C 1.37872 * 120.00527 * 215.04548 * 14 12 11 17 17 N 1.31518 * 120.00277 * 174.98493 * 16 14 12 18 18 Si 1.86804 * 119.99992 * 354.99023 * 16 14 12 19 19 H 1.48499 * 109.47022 * 94.95948 * 18 16 14 20 20 H 1.48497 * 109.47217 * 214.96326 * 18 16 14 21 21 H 1.48500 * 109.46921 * 334.96536 * 18 16 14 22 22 C 1.46927 * 120.62755 * 174.75617 * 8 6 5 23 23 C 1.53006 * 109.47158 * 186.56231 * 3 2 1 24 24 C 1.52993 * 109.46948 * 299.99881 * 23 3 2 25 25 C 1.52999 * 109.46950 * 60.00061 * 23 3 2 26 26 H 4.18738 * 15.03788 * 0.02562 * 4 2 1 27 27 H 0.97005 * 120.00554 * 335.00097 * 5 3 2 28 28 H 1.08998 * 109.58017 * 353.37161 * 9 8 6 29 29 H 1.08998 * 109.58762 * 113.64978 * 9 8 6 30 30 H 1.09007 * 109.50138 * 65.31359 * 10 9 8 31 31 H 1.09001 * 109.49955 * 185.41359 * 10 9 8 32 32 H 1.08995 * 109.45819 * 181.38569 * 11 10 9 33 33 H 1.08996 * 109.45562 * 301.36074 * 11 10 9 34 34 H 0.97003 * 120.00293 * 180.02562 * 17 16 14 35 35 H 1.08997 * 109.58953 * 246.20145 * 22 8 6 36 36 H 1.09006 * 109.59169 * 6.63430 * 22 8 6 37 37 H 1.08999 * 109.46839 * 179.97438 * 23 3 2 38 38 H 1.09002 * 109.47100 * 179.97438 * 24 23 3 39 39 H 1.08998 * 109.47426 * 299.99455 * 24 23 3 40 40 H 1.09005 * 109.47262 * 60.00287 * 24 23 3 41 41 H 1.09002 * 109.47247 * 59.99900 * 25 23 3 42 42 H 1.08999 * 109.47542 * 180.02562 * 25 23 3 43 43 H 1.09005 * 109.47225 * 299.99692 * 25 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 1 3.0095 -0.4079 -0.9429 5 7 3.1346 -0.8219 1.1094 6 6 4.3569 -1.3860 1.0427 7 8 5.0897 -1.1396 0.1043 8 7 4.7689 -2.2187 2.0190 9 6 3.9434 -2.4371 3.2146 10 6 4.7947 -2.1633 4.4584 11 6 6.0611 -3.0209 4.4038 12 6 6.8797 -2.6467 3.1661 13 1 7.1356 -1.5879 3.2057 14 6 8.1421 -3.4688 3.1305 15 1 8.1324 -4.4889 3.4852 16 6 9.3095 -2.9189 2.6450 17 7 10.4324 -3.6011 2.7047 18 14 9.2965 -1.2048 1.9026 19 1 9.6770 -0.2130 2.9403 20 1 10.2670 -1.1441 0.7803 21 1 7.9351 -0.8947 1.3971 22 6 6.0493 -2.9302 1.9051 23 6 3.1553 1.4340 0.1649 24 6 2.6450 2.2930 -0.9937 25 6 2.6451 2.0075 1.4883 26 1 -1.0500 0.0003 -0.0006 27 1 2.5786 -0.9606 1.8920 28 1 3.0907 -1.7583 3.1988 29 1 3.5895 -3.4679 3.2311 30 1 5.0702 -1.1090 4.4858 31 1 4.2238 -2.4140 5.3524 32 1 6.6568 -2.8462 5.2997 33 1 5.7845 -4.0739 4.3511 34 1 11.2538 -3.2141 2.3635 35 1 5.8659 -4.0011 1.8183 36 1 6.5868 -2.5769 1.0250 37 1 4.2453 1.4344 0.1653 38 1 3.0075 3.3142 -0.8761 39 1 3.0085 1.8845 -1.9366 40 1 1.5549 2.2925 -0.9938 41 1 3.0087 1.3954 2.3138 42 1 3.0075 3.0287 1.6057 43 1 1.5550 2.0070 1.4883 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000852304541.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:08:22 Heat of formation + Delta-G solvation = -4.784848 kcal Electronic energy + Delta-G solvation = -22531.039777 eV Core-core repulsion = 19383.621133 eV Total energy + Delta-G solvation = -3147.418645 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.57338 -39.17488 -37.85125 -35.41708 -34.36906 -33.39424 -33.09857 -32.05634 -28.17728 -27.93826 -26.96693 -25.62343 -23.39110 -22.26693 -21.41963 -20.50031 -19.74429 -18.95999 -18.32126 -17.34597 -16.83262 -16.35698 -16.20893 -15.56970 -15.47385 -15.24983 -15.13547 -14.82258 -14.36002 -14.27309 -13.93070 -13.74406 -13.47751 -13.08955 -13.02672 -12.77507 -12.60324 -12.55097 -12.05348 -11.97995 -11.90212 -11.77271 -11.64194 -11.54365 -11.27308 -11.24748 -11.10404 -10.93130 -10.77071 -10.23320 -9.40767 -8.34908 -6.36229 1.23790 1.30182 1.33304 1.49230 1.86182 2.09117 2.18455 2.29718 2.99695 3.05745 3.30783 3.86050 3.97429 4.01306 4.12268 4.15140 4.17149 4.45516 4.51135 4.61162 4.67824 4.69098 4.75789 4.77980 4.92109 4.94399 4.97448 5.02365 5.03073 5.10523 5.17362 5.22793 5.28587 5.34853 5.44750 5.47792 5.59470 5.66507 5.71596 6.01499 6.29876 6.63304 6.72563 6.98977 7.30535 7.53605 8.81525 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.021613 B = 0.005208 C = 0.004624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1295.213545 B = 5374.822550 C = 6054.046964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.229 4.229 3 C 0.279 3.721 4 H 0.079 0.921 5 N -0.726 5.726 6 C 0.700 3.300 7 O -0.637 6.637 8 N -0.627 5.627 9 C 0.111 3.889 10 C -0.127 4.127 11 C -0.100 4.100 12 C 0.006 3.994 13 H 0.020 0.980 14 C -0.509 4.509 15 H 0.045 0.955 16 C 0.026 3.974 17 N -0.942 5.942 18 Si 0.926 3.074 19 H -0.269 1.269 20 H -0.290 1.290 21 H -0.259 1.259 22 C 0.140 3.860 23 C -0.106 4.106 24 C -0.138 4.138 25 C -0.137 4.137 26 H 0.257 0.743 27 H 0.409 0.591 28 H 0.099 0.901 29 H 0.085 0.915 30 H 0.054 0.946 31 H 0.106 0.894 32 H 0.052 0.948 33 H 0.058 0.942 34 H 0.266 0.734 35 H 0.061 0.939 36 H 0.047 0.953 37 H 0.052 0.948 38 H 0.067 0.933 39 H 0.050 0.950 40 H 0.069 0.931 41 H 0.047 0.953 42 H 0.061 0.939 43 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.671 10.133 -0.466 26.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.230 4.230 3 C 0.175 3.825 4 H 0.097 0.903 5 N -0.384 5.384 6 C 0.401 3.599 7 O -0.519 6.519 8 N -0.363 5.363 9 C -0.011 4.011 10 C -0.165 4.165 11 C -0.138 4.138 12 C -0.014 4.014 13 H 0.039 0.961 14 C -0.547 4.547 15 H 0.063 0.937 16 C -0.173 4.173 17 N -0.582 5.582 18 Si 0.752 3.248 19 H -0.194 1.194 20 H -0.216 1.216 21 H -0.183 1.183 22 C 0.017 3.983 23 C -0.125 4.125 24 C -0.196 4.196 25 C -0.194 4.194 26 H 0.273 0.727 27 H 0.248 0.752 28 H 0.117 0.883 29 H 0.103 0.897 30 H 0.073 0.927 31 H 0.124 0.876 32 H 0.071 0.929 33 H 0.077 0.923 34 H 0.075 0.925 35 H 0.079 0.921 36 H 0.065 0.935 37 H 0.070 0.930 38 H 0.086 0.914 39 H 0.069 0.931 40 H 0.088 0.912 41 H 0.066 0.934 42 H 0.080 0.920 43 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -23.951 10.283 -1.172 26.092 hybrid contribution 0.853 0.284 -0.274 0.940 sum -23.099 10.567 -1.446 25.442 Atomic orbital electron populations 1.25748 0.96290 0.97578 0.96468 1.22595 0.93627 1.02930 1.03861 1.17457 0.84309 0.90931 0.89822 0.90331 1.45135 1.16276 1.54314 1.22646 1.16072 0.82193 0.79017 0.82608 1.90873 1.56140 1.67562 1.37315 1.47629 1.22510 1.46008 1.20161 1.21888 0.92941 1.02916 0.83336 1.21946 0.96437 0.99833 0.98301 1.21447 0.95625 0.99475 0.97284 1.19520 0.93339 0.95562 0.93012 0.96133 1.21232 0.93101 0.99706 1.40702 0.93653 1.25719 0.95299 1.00608 0.95631 1.70016 0.99964 1.39943 1.48235 0.86053 0.78537 0.81598 0.78645 1.19407 1.21639 1.18290 1.21910 0.81926 0.94664 0.99793 1.21473 0.99718 0.93442 0.97913 1.21752 1.01798 0.99450 0.96607 1.21747 1.01631 1.00653 0.95367 0.72682 0.75217 0.88260 0.89722 0.92680 0.87594 0.92934 0.92315 0.92508 0.92091 0.93479 0.92981 0.91445 0.93103 0.91190 0.93371 0.92038 0.91166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.82 19.25 74.32 1.43 -0.39 16 2 C -0.23 -4.30 10.20 31.13 0.32 -3.98 16 3 C 0.28 6.94 2.23 43.19 0.10 7.04 16 4 H 0.08 2.35 7.65 -2.39 -0.02 2.33 16 5 N -0.73 -19.24 4.20 -466.56 -1.96 -21.20 16 6 C 0.70 25.80 8.26 179.05 1.48 27.28 16 7 O -0.64 -29.88 15.43 -4.00 -0.06 -29.94 16 8 N -0.63 -22.20 2.97 -836.06 -2.48 -24.68 16 9 C 0.11 2.68 6.39 86.36 0.55 3.23 16 10 C -0.13 -3.28 6.08 30.67 0.19 -3.09 16 11 C -0.10 -3.63 5.15 30.62 0.16 -3.47 16 12 C 0.01 0.26 1.79 -11.32 -0.02 0.24 16 13 H 0.02 1.01 5.59 -2.39 -0.01 0.99 16 14 C -0.51 -28.85 8.86 25.60 0.23 -28.62 16 15 H 0.05 2.78 8.06 -2.91 -0.02 2.76 16 16 C 0.03 1.53 5.47 84.65 0.46 1.99 16 17 N -0.94 -59.54 13.96 21.45 0.30 -59.24 16 18 Si 0.93 48.01 26.64 68.60 1.83 49.84 16 19 H -0.27 -13.28 7.11 99.48 0.71 -12.57 16 20 H -0.29 -15.01 7.11 99.48 0.71 -14.30 16 21 H -0.26 -13.74 6.00 99.48 0.60 -13.14 16 22 C 0.14 6.20 5.56 86.51 0.48 6.68 16 23 C -0.11 -2.49 2.90 -10.79 -0.03 -2.52 16 24 C -0.14 -2.62 8.94 71.98 0.64 -1.98 16 25 C -0.14 -2.62 8.78 71.98 0.63 -1.99 16 26 H 0.26 0.96 7.80 -4.42 -0.03 0.92 16 27 H 0.41 8.23 6.07 -92.70 -0.56 7.67 16 28 H 0.10 1.69 5.64 -2.39 -0.01 1.68 16 29 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 30 H 0.05 1.51 8.14 -2.38 -0.02 1.49 16 31 H 0.11 1.95 8.14 -2.39 -0.02 1.93 16 32 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 33 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 34 H 0.27 15.85 8.31 -92.71 -0.77 15.08 16 35 H 0.06 2.62 8.14 -2.39 -0.02 2.60 16 36 H 0.05 2.42 5.93 -2.38 -0.01 2.41 16 37 H 0.05 1.60 8.10 -2.39 -0.02 1.58 16 38 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 39 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 40 H 0.07 1.12 7.23 -2.38 -0.02 1.11 16 41 H 0.05 0.98 7.60 -2.39 -0.02 0.97 16 42 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 43 H 0.07 1.12 7.23 -2.38 -0.02 1.10 16 Total: -1.00 -75.81 341.76 4.55 -71.26 By element: Atomic # 1 Polarization: 13.23 SS G_CDS: 0.31 Total: 13.54 kcal Atomic # 6 Polarization: -6.19 SS G_CDS: 6.61 Total: 0.43 kcal Atomic # 7 Polarization: -100.98 SS G_CDS: -4.14 Total: -105.12 kcal Atomic # 8 Polarization: -29.88 SS G_CDS: -0.06 Total: -29.94 kcal Atomic # 14 Polarization: 48.01 SS G_CDS: 1.83 Total: 49.84 kcal Total: -75.81 4.55 -71.26 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000852304541.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.472 kcal (2) G-P(sol) polarization free energy of solvation -75.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.257 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds