Wall clock time and date at job start Tue Mar 31 2020 00:46:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 H 1.09002 * 109.46878 * 189.12033 * 3 2 1 5 5 C 1.53001 * 109.47644 * 309.12186 * 3 2 1 6 6 C 1.52996 * 109.47621 * 180.02562 * 5 3 2 7 7 C 1.53007 * 109.46896 * 300.00204 * 6 5 3 8 8 H 1.08994 * 109.47176 * 299.99874 * 7 6 5 9 9 N 1.46506 * 109.46750 * 179.97438 * 7 6 5 10 10 C 1.34771 * 119.99515 * 85.00464 * 9 7 6 11 11 O 1.21583 * 120.00543 * 0.26795 * 10 9 7 12 12 N 1.34784 * 119.99547 * 179.97438 * 10 9 7 13 13 C 1.46499 * 119.99971 * 179.97438 * 12 10 9 14 14 C 1.52992 * 109.47267 * 180.02562 * 13 12 10 15 15 C 1.53005 * 109.47277 * 180.02562 * 14 13 12 16 16 C 1.50699 * 109.46913 * 180.02562 * 15 14 13 17 17 H 1.07993 * 120.00408 * 359.97438 * 16 15 14 18 18 C 1.37876 * 119.99553 * 179.97438 * 16 15 14 19 19 N 1.31515 * 119.99914 * 179.97438 * 18 16 15 20 20 Si 1.86802 * 120.00270 * 359.97438 * 18 16 15 21 21 H 1.48502 * 109.46933 * 90.00098 * 20 18 16 22 22 H 1.48505 * 109.47132 * 210.00063 * 20 18 16 23 23 H 1.48501 * 109.47110 * 329.99906 * 20 18 16 24 24 C 1.53002 * 109.46926 * 60.00152 * 7 6 5 25 25 C 1.52996 * 109.46871 * 299.99485 * 24 7 6 26 26 H 4.18740 * 15.03888 * 0.02562 * 4 2 1 27 27 H 1.08997 * 109.46986 * 300.00452 * 5 3 2 28 28 H 1.09007 * 109.46783 * 60.00311 * 5 3 2 29 29 H 1.08993 * 109.47412 * 180.02562 * 6 5 3 30 30 H 1.09002 * 109.46968 * 59.99806 * 6 5 3 31 31 H 0.96999 * 120.00076 * 265.00123 * 9 7 6 32 32 H 0.96999 * 120.00044 * 359.97438 * 12 10 9 33 33 H 1.09004 * 109.47024 * 300.00310 * 13 12 10 34 34 H 1.09005 * 109.47136 * 59.99926 * 13 12 10 35 35 H 1.09004 * 109.47330 * 300.00096 * 14 13 12 36 36 H 1.09005 * 109.47124 * 59.99892 * 14 13 12 37 37 H 1.08997 * 109.46785 * 299.99511 * 15 14 13 38 38 H 1.08992 * 109.47085 * 59.99748 * 15 14 13 39 39 H 0.96998 * 120.00171 * 180.02562 * 19 18 16 40 40 H 1.08994 * 109.47420 * 59.99871 * 24 7 6 41 41 H 1.09007 * 109.46811 * 179.97438 * 24 7 6 42 42 H 1.09001 * 109.46909 * 180.02562 * 25 24 7 43 43 H 1.09000 * 109.47312 * 299.99930 * 25 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0088 1.0155 0.1629 5 6 3.1565 -0.9093 1.1191 6 6 4.6865 -0.9081 1.1195 7 6 5.1972 -1.4215 -0.2284 8 1 4.8347 -2.4364 -0.3915 9 7 6.6623 -1.4198 -0.2282 10 6 7.3372 -2.4692 0.2813 11 8 6.7304 -3.4195 0.7362 12 7 8.6850 -2.4679 0.2810 13 6 9.4188 -3.6083 0.8352 14 6 10.9227 -3.3551 0.7133 15 6 11.6890 -4.5465 1.2916 16 6 13.1704 -4.2967 1.1721 17 1 13.5294 -3.3802 0.7278 18 6 14.0673 -5.2384 1.6300 19 7 15.3601 -5.0207 1.5253 20 14 13.4464 -6.8234 2.3992 21 1 13.2829 -7.8550 1.3436 22 1 14.4250 -7.2999 3.4096 23 1 12.1378 -6.5754 3.0560 24 6 4.6868 -0.5115 -1.3474 25 6 3.1568 -0.5128 -1.3477 26 1 -1.0500 -0.0012 0.0003 27 1 2.7930 -0.5432 2.0792 28 1 2.7937 -1.9242 0.9561 29 1 5.0501 -1.5566 1.9164 30 1 5.0490 0.1069 1.2826 31 1 7.1464 -0.6634 -0.5947 32 1 9.1692 -1.7118 -0.0862 33 1 9.1557 -3.7339 1.8856 34 1 9.1562 -4.5117 0.2845 35 1 11.1861 -3.2293 -0.3369 36 1 11.1849 -2.4519 1.2644 37 1 11.4258 -4.6726 2.3417 38 1 11.4267 -5.4494 0.7403 39 1 15.9911 -5.6833 1.8471 40 1 5.0492 0.5034 -1.1842 41 1 5.0510 -0.8770 -2.3076 42 1 2.7931 0.1352 -2.1452 43 1 2.7943 -1.5277 -1.5110 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000872876558.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:46:54 Heat of formation + Delta-G solvation = -12.374013 kcal Electronic energy + Delta-G solvation = -20650.392119 eV Core-core repulsion = 17502.644384 eV Total energy + Delta-G solvation = -3147.747736 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.26454 -38.76076 -35.68418 -34.78982 -33.35024 -32.66796 -31.34435 -31.20423 -29.23429 -26.93156 -23.66654 -23.10663 -22.47455 -20.83294 -20.52317 -20.18085 -18.48527 -18.05110 -16.92752 -16.45098 -15.62375 -15.38608 -14.97426 -14.70506 -14.57330 -14.20513 -14.04504 -13.84699 -13.34611 -13.14526 -12.68281 -12.60347 -12.12748 -11.98719 -11.88280 -11.61630 -11.51434 -11.22229 -11.05115 -10.93882 -10.86997 -10.38966 -10.27820 -10.22861 -9.98926 -9.80554 -9.66286 -9.21898 -9.20327 -8.66050 -8.54711 -6.05682 -4.04305 2.48085 2.50708 2.76321 3.32246 3.33273 3.39729 3.44430 3.92239 4.30139 4.33662 4.39993 4.45298 4.74719 4.78590 4.88245 5.04899 5.08807 5.10314 5.28552 5.33486 5.35854 5.55845 5.62545 5.69283 5.71059 5.73223 5.76271 5.83429 5.98694 6.05206 6.06923 6.40449 6.47717 6.48545 6.71649 6.84240 7.03115 7.24797 7.28726 7.38056 7.76660 8.12564 8.50888 8.72659 8.98155 9.56680 11.07519 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.053205 B = 0.002332 C = 0.002279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 526.142287 B =12002.361396 C =12281.254657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.178 4.178 3 C 0.018 3.982 4 H 0.093 0.907 5 C -0.107 4.107 6 C -0.130 4.130 7 C 0.163 3.837 8 H 0.089 0.911 9 N -0.748 5.748 10 C 0.701 3.299 11 O -0.594 6.594 12 N -0.742 5.742 13 C 0.133 3.867 14 C -0.113 4.113 15 C -0.011 4.011 16 C -0.522 4.522 17 H 0.072 0.928 18 C 0.066 3.934 19 N -0.903 5.903 20 Si 0.880 3.120 21 H -0.277 1.277 22 H -0.288 1.288 23 H -0.264 1.264 24 C -0.126 4.126 25 C -0.105 4.105 26 H 0.216 0.784 27 H 0.069 0.931 28 H 0.070 0.930 29 H 0.075 0.925 30 H 0.065 0.935 31 H 0.394 0.606 32 H 0.395 0.605 33 H 0.061 0.939 34 H 0.061 0.939 35 H 0.059 0.941 36 H 0.060 0.940 37 H 0.019 0.981 38 H 0.015 0.985 39 H 0.263 0.737 40 H 0.070 0.930 41 H 0.074 0.926 42 H 0.071 0.929 43 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.629 12.982 -5.406 30.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.178 4.178 3 C 0.000 4.000 4 H 0.111 0.889 5 C -0.145 4.145 6 C -0.169 4.169 7 C 0.058 3.942 8 H 0.107 0.893 9 N -0.403 5.403 10 C 0.400 3.600 11 O -0.472 6.472 12 N -0.397 5.397 13 C 0.010 3.990 14 C -0.151 4.151 15 C -0.049 4.049 16 C -0.560 4.560 17 H 0.090 0.910 18 C -0.135 4.135 19 N -0.542 5.542 20 Si 0.707 3.293 21 H -0.202 1.202 22 H -0.214 1.214 23 H -0.189 1.189 24 C -0.164 4.164 25 C -0.143 4.143 26 H 0.233 0.767 27 H 0.087 0.913 28 H 0.088 0.912 29 H 0.093 0.907 30 H 0.084 0.916 31 H 0.228 0.772 32 H 0.228 0.772 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.078 0.922 36 H 0.078 0.922 37 H 0.037 0.963 38 H 0.033 0.967 39 H 0.073 0.927 40 H 0.089 0.911 41 H 0.093 0.907 42 H 0.090 0.910 43 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -26.978 11.980 -4.931 29.927 hybrid contribution 0.117 -0.098 0.089 0.177 sum -26.860 11.881 -4.842 29.767 Atomic orbital electron populations 1.24911 0.95940 1.01273 1.00837 1.23093 0.94296 1.00137 1.00294 1.18411 0.84247 1.00874 0.96462 0.88948 1.21514 0.95258 0.99966 0.97753 1.21971 0.94658 1.01910 0.98383 1.20795 0.78470 1.00643 0.94318 0.89318 1.45201 1.06713 1.21304 1.67071 1.16027 0.82036 0.82860 0.79042 1.90910 1.68019 1.35441 1.52807 1.45345 1.04317 1.23725 1.66278 1.21500 0.92029 0.87185 0.98322 1.21705 0.90708 1.01139 1.01535 1.19503 0.96122 0.93258 0.96047 1.21099 0.88754 1.05765 1.40350 0.91027 1.25031 0.94757 0.98353 0.95373 1.69912 1.01157 1.35705 1.47449 0.86775 0.79096 0.83866 0.79563 1.20242 1.21387 1.18860 1.21818 0.95503 1.00206 0.98871 1.21484 0.94593 1.02323 0.95938 0.76742 0.91273 0.91160 0.90679 0.91624 0.77244 0.77193 0.92029 0.92018 0.92179 0.92150 0.96281 0.96709 0.92716 0.91094 0.90725 0.91027 0.91072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -1.58 19.25 29.55 0.57 -1.01 16 2 C -0.18 -1.48 12.56 -37.12 -0.47 -1.94 16 3 C 0.02 0.13 2.56 -93.41 -0.24 -0.11 16 4 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 5 C -0.11 -0.83 5.16 -26.73 -0.14 -0.97 16 6 C -0.13 -1.14 5.49 -26.73 -0.15 -1.28 16 7 C 0.16 1.47 2.46 -67.92 -0.17 1.30 16 8 H 0.09 1.01 7.57 -51.93 -0.39 0.62 16 9 N -0.75 -7.41 5.08 -58.67 -0.30 -7.71 16 10 C 0.70 10.10 8.53 -86.92 -0.74 9.36 16 11 O -0.59 -11.09 16.00 5.29 0.08 -11.01 16 12 N -0.74 -10.17 5.56 -65.23 -0.36 -10.53 16 13 C 0.13 2.23 5.67 -4.05 -0.02 2.21 16 14 C -0.11 -2.10 5.27 -26.73 -0.14 -2.24 16 15 C -0.01 -0.27 4.04 -27.88 -0.11 -0.38 16 16 C -0.52 -14.71 9.66 -34.44 -0.33 -15.05 16 17 H 0.07 2.15 7.99 -52.49 -0.42 1.73 16 18 C 0.07 1.92 5.47 -17.82 -0.10 1.83 16 19 N -0.90 -27.77 13.96 55.43 0.77 -27.00 16 20 Si 0.88 21.81 27.47 -169.99 -4.67 17.15 16 21 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 22 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 23 H -0.26 -6.32 6.54 56.52 0.37 -5.95 16 24 C -0.13 -0.77 5.39 -26.73 -0.14 -0.92 16 25 C -0.11 -0.66 5.16 -26.73 -0.14 -0.80 16 26 H 0.22 0.90 7.80 -54.09 -0.42 0.48 16 27 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.07 0.60 8.14 -51.92 -0.42 0.18 16 29 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.39 2.76 8.62 -40.82 -0.35 2.41 16 32 H 0.39 4.26 8.49 -40.82 -0.35 3.92 16 33 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 34 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 35 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 36 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 37 H 0.02 0.45 7.20 -51.93 -0.37 0.08 16 38 H 0.01 0.34 7.57 -51.93 -0.39 -0.05 16 39 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 40 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 41 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 43 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 LS Contribution 354.90 15.07 5.35 5.35 Total: -1.00 -33.92 354.90 -8.80 -42.72 By element: Atomic # 1 Polarization: 8.40 SS G_CDS: -7.36 Total: 1.04 kcal Atomic # 6 Polarization: -7.68 SS G_CDS: -2.32 Total: -10.00 kcal Atomic # 7 Polarization: -45.36 SS G_CDS: 0.11 Total: -45.25 kcal Atomic # 8 Polarization: -11.09 SS G_CDS: 0.08 Total: -11.01 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -4.67 Total: 17.15 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -33.92 -8.80 -42.72 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000872876558.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.350 kcal (2) G-P(sol) polarization free energy of solvation -33.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.724 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds