Wall clock time and date at job start Tue Mar 31 2020 00:30:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17406 * 1 3 3 C 1.47194 * 179.97438 * 2 1 4 4 N 1.46506 * 110.01734 * 122.04798 * 3 2 1 5 5 C 1.34777 * 119.99873 * 58.60337 * 4 3 2 6 6 O 1.21592 * 119.99797 * 0.02562 * 5 4 3 7 7 N 1.34774 * 119.99902 * 180.02562 * 5 4 3 8 8 C 1.46507 * 119.99769 * 180.02562 * 7 5 4 9 9 C 1.52994 * 109.46703 * 179.97438 * 8 7 5 10 10 C 1.52998 * 109.47366 * 299.99207 * 9 8 7 11 11 C 1.53005 * 109.47373 * 59.99914 * 9 8 7 12 12 C 1.50700 * 109.46890 * 179.97438 * 9 8 7 13 13 H 1.07999 * 119.99988 * 359.97438 * 12 9 8 14 14 C 1.37885 * 120.00051 * 180.02562 * 12 9 8 15 15 N 1.31514 * 120.00031 * 359.97438 * 14 12 9 16 16 Si 1.86803 * 119.99856 * 179.97438 * 14 12 9 17 17 H 1.48494 * 109.47228 * 359.97438 * 16 14 12 18 18 H 1.48501 * 109.46793 * 119.99651 * 16 14 12 19 19 H 1.48492 * 109.47108 * 239.99536 * 16 14 12 20 20 C 1.54266 * 110.07297 * 243.46487 * 3 2 1 21 21 C 1.54886 * 104.19636 * 95.70128 * 20 3 2 22 22 C 1.54884 * 102.74871 * 37.94195 * 21 20 3 23 23 C 1.53873 * 110.03531 * 0.65691 * 3 2 1 24 24 H 4.41743 * 5.46561 * 180.02562 * 4 1 2 25 25 H 0.96999 * 120.00080 * 238.60941 * 4 3 2 26 26 H 0.96999 * 120.00050 * 359.97438 * 7 5 4 27 27 H 1.08999 * 109.46398 * 299.99705 * 8 7 5 28 28 H 1.08992 * 109.47350 * 59.99653 * 8 7 5 29 29 H 1.09005 * 109.46648 * 60.00616 * 10 9 8 30 30 H 1.08998 * 109.47444 * 180.02562 * 10 9 8 31 31 H 1.08992 * 109.47294 * 300.00664 * 10 9 8 32 32 H 1.09002 * 109.47265 * 59.99901 * 11 9 8 33 33 H 1.08998 * 109.47134 * 179.97438 * 11 9 8 34 34 H 1.08996 * 109.46568 * 299.99662 * 11 9 8 35 35 H 0.97000 * 119.99712 * 180.02562 * 15 14 12 36 36 H 1.08998 * 110.48638 * 214.38053 * 20 3 2 37 37 H 1.09001 * 110.48707 * 337.02140 * 20 3 2 38 38 H 1.09004 * 110.75377 * 279.62714 * 21 20 3 39 39 H 1.09001 * 110.91478 * 156.33234 * 21 20 3 40 40 H 1.09008 * 110.48289 * 203.37850 * 22 21 20 41 41 H 1.09002 * 110.48692 * 80.74044 * 22 21 20 42 42 H 1.08998 * 110.03454 * 359.95235 * 23 3 2 43 43 H 1.09004 * 110.03169 * 121.38509 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1472 0.7313 -1.1668 5 6 2.8059 2.0221 -1.3512 6 8 2.0825 2.5802 -0.5489 7 7 3.2665 2.6941 -2.4248 8 6 2.8960 4.0973 -2.6249 9 6 3.5474 4.6188 -3.9073 10 6 5.0686 4.5049 -3.7894 11 6 3.0646 3.7888 -5.0986 12 6 3.1658 6.0620 -4.1135 13 1 2.5227 6.5576 -3.4014 14 6 3.6370 6.7495 -5.2120 15 7 4.4198 6.1459 -6.0794 16 14 3.1633 8.5383 -5.4680 17 1 2.2800 8.9800 -4.3590 18 1 4.3889 9.3766 -5.4892 19 1 2.4443 8.6800 -6.7594 20 6 3.1752 0.6482 1.2963 21 6 3.4462 -0.5519 2.2372 22 6 4.0053 -1.6249 1.2702 23 6 3.1738 -1.4446 -0.0166 24 1 -1.0501 0.0001 0.0003 25 1 3.7245 0.2861 -1.8066 26 1 3.8439 2.2489 -3.0646 27 1 1.8123 4.1785 -2.7085 28 1 3.2403 4.6886 -1.7765 29 1 5.3443 3.4609 -3.6405 30 1 5.5327 4.8768 -4.7028 31 1 5.4125 5.0961 -2.9408 32 1 1.9809 3.8701 -5.1826 33 1 3.5284 4.1607 -6.0122 34 1 3.3403 2.7449 -4.9496 35 1 4.7515 6.6297 -6.8520 36 1 4.0973 1.1953 1.1005 37 1 2.4229 1.3087 1.7275 38 1 2.5217 -0.8948 2.7019 39 1 4.1850 -0.2927 2.9956 40 1 3.8588 -2.6233 1.6824 41 1 5.0616 -1.4449 1.0703 42 1 2.3400 -2.1466 -0.0238 43 1 3.8029 -1.6024 -0.8927 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000883740354.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:30:29 Heat of formation + Delta-G solvation = 13.276821 kcal Electronic energy + Delta-G solvation = -22063.883888 eV Core-core repulsion = 18917.248456 eV Total energy + Delta-G solvation = -3146.635432 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.16631 -38.19888 -36.24318 -33.60479 -33.20646 -32.22091 -30.67810 -28.98892 -27.62206 -25.69714 -25.47851 -24.57543 -21.59051 -21.13608 -20.61605 -18.80004 -18.12705 -17.69476 -16.29788 -15.80294 -15.49258 -15.00769 -14.69118 -14.55825 -14.04157 -13.66779 -13.55891 -12.96288 -12.83810 -12.30688 -12.15089 -11.95875 -11.51762 -11.39920 -11.35493 -11.18477 -11.15892 -10.87676 -10.82601 -10.63685 -10.41078 -10.35748 -10.18136 -10.05453 -9.60267 -9.56268 -9.26561 -9.03867 -8.75430 -8.39739 -8.16292 -6.00157 -4.09763 2.62804 2.96470 3.28654 3.37100 3.41487 3.48244 3.68414 4.29407 4.40402 4.41382 4.50051 4.71882 4.93256 5.25999 5.26734 5.29555 5.38203 5.48857 5.58089 5.68443 5.74200 5.87431 6.09287 6.19698 6.21996 6.28207 6.40437 6.54000 6.71870 6.83340 6.85750 6.94469 7.06287 7.14893 7.33716 7.44976 7.58668 7.72273 7.77697 8.03863 8.15288 8.41109 8.53895 8.90529 9.11905 9.55900 11.01300 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.034138 B = 0.003604 C = 0.003525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 819.994263 B = 7766.427406 C = 7940.533133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.173 4.173 3 C 0.305 3.695 4 N -0.745 5.745 5 C 0.697 3.303 6 O -0.587 6.587 7 N -0.734 5.734 8 C 0.152 3.848 9 C 0.055 3.945 10 C -0.129 4.129 11 C -0.129 4.129 12 C -0.504 4.504 13 H 0.058 0.942 14 C 0.065 3.935 15 N -0.886 5.886 16 Si 0.893 3.107 17 H -0.273 1.273 18 H -0.285 1.285 19 H -0.285 1.285 20 C -0.117 4.117 21 C -0.126 4.126 22 C -0.122 4.122 23 C -0.121 4.121 24 H 0.214 0.786 25 H 0.395 0.605 26 H 0.392 0.608 27 H 0.051 0.949 28 H 0.051 0.949 29 H 0.005 0.995 30 H 0.084 0.916 31 H 0.026 0.974 32 H 0.026 0.974 33 H 0.085 0.915 34 H 0.005 0.995 35 H 0.259 0.741 36 H 0.077 0.923 37 H 0.079 0.921 38 H 0.068 0.932 39 H 0.071 0.929 40 H 0.069 0.931 41 H 0.070 0.930 42 H 0.078 0.922 43 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.183 -16.251 10.427 19.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.174 4.174 3 C 0.217 3.783 4 N -0.402 5.402 5 C 0.397 3.603 6 O -0.465 6.465 7 N -0.388 5.388 8 C 0.029 3.971 9 C 0.054 3.946 10 C -0.187 4.187 11 C -0.187 4.187 12 C -0.542 4.542 13 H 0.076 0.924 14 C -0.136 4.136 15 N -0.525 5.525 16 Si 0.721 3.279 17 H -0.197 1.197 18 H -0.211 1.211 19 H -0.211 1.211 20 C -0.155 4.155 21 C -0.164 4.164 22 C -0.159 4.159 23 C -0.159 4.159 24 H 0.231 0.769 25 H 0.230 0.770 26 H 0.227 0.773 27 H 0.069 0.931 28 H 0.070 0.930 29 H 0.024 0.976 30 H 0.103 0.897 31 H 0.045 0.955 32 H 0.045 0.955 33 H 0.103 0.897 34 H 0.024 0.976 35 H 0.069 0.931 36 H 0.096 0.904 37 H 0.098 0.902 38 H 0.087 0.913 39 H 0.089 0.911 40 H 0.088 0.912 41 H 0.089 0.911 42 H 0.097 0.903 43 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -0.376 -15.632 10.967 19.099 hybrid contribution 0.008 0.642 -0.930 1.130 sum -0.368 -14.990 10.037 18.044 Atomic orbital electron populations 1.24793 0.95759 1.01126 0.99606 1.22926 0.93988 0.99706 1.00770 1.17429 0.83284 0.91294 0.86251 1.45469 1.55435 1.11244 1.28061 1.16092 0.80723 0.80893 0.82622 1.90891 1.41314 1.68110 1.46181 1.45510 1.53737 1.14442 1.25104 1.21556 0.98932 0.77144 0.99487 1.18371 0.92246 0.95034 0.88902 1.21806 0.98555 0.95907 1.02382 1.21811 0.99061 0.94932 1.02870 1.21035 1.30001 0.94937 1.08262 0.92380 1.24882 0.94849 0.98083 0.95744 1.69818 1.33829 1.36061 1.12801 0.86519 0.78282 0.85058 0.78060 1.19747 1.21076 1.21095 1.22717 1.01895 0.97551 0.93368 1.22531 1.01018 0.95273 0.97564 1.22351 0.99543 0.99302 0.94752 1.22437 1.00217 0.93890 0.99346 0.76878 0.77040 0.77307 0.93089 0.93024 0.97557 0.89694 0.95483 0.95519 0.89675 0.97581 0.93116 0.90402 0.90215 0.91345 0.91066 0.91202 0.91079 0.90305 0.90390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.70 19.25 29.55 0.57 -2.13 16 2 C -0.17 -2.56 10.26 -37.12 -0.38 -2.94 16 3 C 0.30 3.90 0.87 -133.49 -0.12 3.78 16 4 N -0.75 -10.33 5.07 -53.99 -0.27 -10.60 16 5 C 0.70 12.79 8.02 -86.92 -0.70 12.09 16 6 O -0.59 -12.94 14.57 5.28 0.08 -12.86 16 7 N -0.73 -13.53 4.96 -65.23 -0.32 -13.86 16 8 C 0.15 3.33 4.50 -4.04 -0.02 3.31 16 9 C 0.06 1.30 0.50 -155.66 -0.08 1.22 16 10 C -0.13 -2.92 8.08 37.16 0.30 -2.62 16 11 C -0.13 -2.95 8.08 37.16 0.30 -2.65 16 12 C -0.50 -13.36 8.01 -34.44 -0.28 -13.64 16 13 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 14 C 0.07 1.73 5.15 -17.82 -0.09 1.64 16 15 N -0.89 -23.74 9.35 55.43 0.52 -23.22 16 16 Si 0.89 20.89 29.54 -169.99 -5.02 15.87 16 17 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 18 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 19 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 20 C -0.12 -1.48 4.95 -25.07 -0.12 -1.61 16 21 C -0.13 -1.15 6.91 -24.74 -0.17 -1.33 16 22 C -0.12 -0.94 6.83 -25.08 -0.17 -1.11 16 23 C -0.12 -1.09 6.22 -25.61 -0.16 -1.25 16 24 H 0.21 2.20 7.80 -54.09 -0.42 1.77 16 25 H 0.39 4.29 8.08 -40.82 -0.33 3.96 16 26 H 0.39 6.47 6.18 -40.82 -0.25 6.22 16 27 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 28 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 29 H 0.01 0.11 6.86 -51.93 -0.36 -0.25 16 30 H 0.08 2.13 6.07 -51.93 -0.32 1.81 16 31 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 32 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 33 H 0.08 2.14 6.07 -51.93 -0.32 1.83 16 34 H 0.01 0.11 6.86 -51.93 -0.36 -0.25 16 35 H 0.26 6.68 8.31 -40.82 -0.34 6.34 16 36 H 0.08 1.03 8.05 -51.93 -0.42 0.62 16 37 H 0.08 1.20 7.69 -51.93 -0.40 0.80 16 38 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 39 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.07 0.44 8.14 -51.92 -0.42 0.02 16 41 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.08 0.69 7.66 -51.93 -0.40 0.30 16 43 H 0.08 0.59 7.44 -51.93 -0.39 0.20 16 LS Contribution 342.39 15.07 5.16 5.16 Total: -1.00 -30.51 342.39 -7.85 -38.36 By element: Atomic # 1 Polarization: 15.24 SS G_CDS: -6.87 Total: 8.37 kcal Atomic # 6 Polarization: -6.11 SS G_CDS: -1.11 Total: -7.22 kcal Atomic # 7 Polarization: -47.61 SS G_CDS: -0.08 Total: -47.68 kcal Atomic # 8 Polarization: -12.94 SS G_CDS: 0.08 Total: -12.86 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -30.51 -7.85 -38.36 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000883740354.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.641 kcal (2) G-P(sol) polarization free energy of solvation -30.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.364 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds