Wall clock time and date at job start Tue Mar 31 2020 00:30:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17406 * 1 3 3 C 1.47194 * 179.97438 * 2 1 4 4 N 1.46506 * 110.01734 * 122.04798 * 3 2 1 5 5 C 1.34777 * 119.99873 * 58.60337 * 4 3 2 6 6 O 1.21592 * 119.99797 * 0.02562 * 5 4 3 7 7 N 1.34774 * 119.99902 * 180.02562 * 5 4 3 8 8 C 1.46507 * 119.99769 * 180.02562 * 7 5 4 9 9 C 1.52994 * 109.46703 * 179.97438 * 8 7 5 10 10 C 1.52998 * 109.47366 * 299.99207 * 9 8 7 11 11 C 1.53005 * 109.47373 * 59.99914 * 9 8 7 12 12 C 1.50700 * 109.46890 * 179.97438 * 9 8 7 13 13 H 1.07999 * 119.99988 * 359.97438 * 12 9 8 14 14 C 1.37885 * 120.00051 * 180.02562 * 12 9 8 15 15 N 1.31514 * 120.00031 * 359.97438 * 14 12 9 16 16 Si 1.86803 * 119.99856 * 179.97438 * 14 12 9 17 17 H 1.48494 * 109.47228 * 359.97438 * 16 14 12 18 18 H 1.48501 * 109.46793 * 119.99651 * 16 14 12 19 19 H 1.48492 * 109.47108 * 239.99536 * 16 14 12 20 20 C 1.54266 * 110.07297 * 243.46487 * 3 2 1 21 21 C 1.54886 * 104.19636 * 95.70128 * 20 3 2 22 22 C 1.54884 * 102.74871 * 37.94195 * 21 20 3 23 23 C 1.53873 * 110.03531 * 0.65691 * 3 2 1 24 24 H 4.41743 * 5.46561 * 180.02562 * 4 1 2 25 25 H 0.96999 * 120.00080 * 238.60941 * 4 3 2 26 26 H 0.96999 * 120.00050 * 359.97438 * 7 5 4 27 27 H 1.08999 * 109.46398 * 299.99705 * 8 7 5 28 28 H 1.08992 * 109.47350 * 59.99653 * 8 7 5 29 29 H 1.09005 * 109.46648 * 60.00616 * 10 9 8 30 30 H 1.08998 * 109.47444 * 180.02562 * 10 9 8 31 31 H 1.08992 * 109.47294 * 300.00664 * 10 9 8 32 32 H 1.09002 * 109.47265 * 59.99901 * 11 9 8 33 33 H 1.08998 * 109.47134 * 179.97438 * 11 9 8 34 34 H 1.08996 * 109.46568 * 299.99662 * 11 9 8 35 35 H 0.97000 * 119.99712 * 180.02562 * 15 14 12 36 36 H 1.08998 * 110.48638 * 214.38053 * 20 3 2 37 37 H 1.09001 * 110.48707 * 337.02140 * 20 3 2 38 38 H 1.09004 * 110.75377 * 279.62714 * 21 20 3 39 39 H 1.09001 * 110.91478 * 156.33234 * 21 20 3 40 40 H 1.09008 * 110.48289 * 203.37850 * 22 21 20 41 41 H 1.09002 * 110.48692 * 80.74044 * 22 21 20 42 42 H 1.08998 * 110.03454 * 359.95235 * 23 3 2 43 43 H 1.09004 * 110.03169 * 121.38509 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1472 0.7313 -1.1668 5 6 2.8059 2.0221 -1.3512 6 8 2.0825 2.5802 -0.5489 7 7 3.2665 2.6941 -2.4248 8 6 2.8960 4.0973 -2.6249 9 6 3.5474 4.6188 -3.9073 10 6 5.0686 4.5049 -3.7894 11 6 3.0646 3.7888 -5.0986 12 6 3.1658 6.0620 -4.1135 13 1 2.5227 6.5576 -3.4014 14 6 3.6370 6.7495 -5.2120 15 7 4.4198 6.1459 -6.0794 16 14 3.1633 8.5383 -5.4680 17 1 2.2800 8.9800 -4.3590 18 1 4.3889 9.3766 -5.4892 19 1 2.4443 8.6800 -6.7594 20 6 3.1752 0.6482 1.2963 21 6 3.4462 -0.5519 2.2372 22 6 4.0053 -1.6249 1.2702 23 6 3.1738 -1.4446 -0.0166 24 1 -1.0501 0.0001 0.0003 25 1 3.7245 0.2861 -1.8066 26 1 3.8439 2.2489 -3.0646 27 1 1.8123 4.1785 -2.7085 28 1 3.2403 4.6886 -1.7765 29 1 5.3443 3.4609 -3.6405 30 1 5.5327 4.8768 -4.7028 31 1 5.4125 5.0961 -2.9408 32 1 1.9809 3.8701 -5.1826 33 1 3.5284 4.1607 -6.0122 34 1 3.3403 2.7449 -4.9496 35 1 4.7515 6.6297 -6.8520 36 1 4.0973 1.1953 1.1005 37 1 2.4229 1.3087 1.7275 38 1 2.5217 -0.8948 2.7019 39 1 4.1850 -0.2927 2.9956 40 1 3.8588 -2.6233 1.6824 41 1 5.0616 -1.4449 1.0703 42 1 2.3400 -2.1466 -0.0238 43 1 3.8029 -1.6024 -0.8927 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000883740354.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:30:28 Heat of formation + Delta-G solvation = -5.330350 kcal Electronic energy + Delta-G solvation = -22064.690756 eV Core-core repulsion = 18917.248456 eV Total energy + Delta-G solvation = -3147.442299 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.43103 -39.42810 -37.95686 -35.02910 -34.64639 -33.44336 -32.45089 -29.79042 -28.68180 -27.55922 -27.39038 -26.32603 -22.58635 -22.28893 -21.61568 -20.59794 -19.52485 -18.87346 -17.76523 -17.34155 -16.67704 -16.48678 -16.19437 -15.94094 -15.30457 -15.10142 -14.70757 -14.58317 -14.42796 -14.00373 -13.38470 -13.15711 -13.10551 -12.87795 -12.68839 -12.56790 -12.37003 -12.24906 -12.14272 -12.07037 -12.03373 -11.64001 -11.48088 -11.41552 -11.25854 -11.12094 -10.91574 -10.69272 -10.41341 -10.34000 -9.72442 -8.02327 -6.17754 1.41281 1.43693 1.46499 1.55414 1.89631 2.18016 2.26850 2.47217 3.21241 3.34256 3.46840 3.60514 3.71767 4.15853 4.42588 4.44578 4.49421 4.53128 4.56905 4.71623 4.74125 4.85599 4.88641 4.99468 5.06192 5.06480 5.10928 5.19179 5.20466 5.23562 5.27683 5.39074 5.45116 5.61266 5.65383 5.67476 5.67774 6.07843 6.15559 6.22316 6.44190 6.70844 6.86374 7.18737 7.49902 7.68165 8.96818 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.034138 B = 0.003604 C = 0.003525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 819.994263 B = 7766.427406 C = 7940.533133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.206 4.206 3 C 0.293 3.707 4 N -0.726 5.726 5 C 0.695 3.305 6 O -0.627 6.627 7 N -0.726 5.726 8 C 0.171 3.829 9 C 0.051 3.949 10 C -0.118 4.118 11 C -0.118 4.118 12 C -0.528 4.528 13 H 0.043 0.957 14 C 0.029 3.971 15 N -0.898 5.898 16 Si 0.945 3.055 17 H -0.276 1.276 18 H -0.280 1.280 19 H -0.281 1.281 20 C -0.118 4.118 21 C -0.120 4.120 22 C -0.114 4.114 23 C -0.114 4.114 24 H 0.240 0.760 25 H 0.412 0.588 26 H 0.405 0.595 27 H 0.030 0.970 28 H 0.034 0.966 29 H 0.037 0.963 30 H 0.062 0.938 31 H 0.017 0.983 32 H 0.015 0.985 33 H 0.063 0.937 34 H 0.036 0.964 35 H 0.260 0.740 36 H 0.068 0.932 37 H 0.044 0.956 38 H 0.068 0.932 39 H 0.083 0.917 40 H 0.091 0.909 41 H 0.082 0.918 42 H 0.083 0.917 43 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.977 -18.298 10.542 21.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.207 4.207 3 C 0.207 3.793 4 N -0.384 5.384 5 C 0.395 3.605 6 O -0.508 6.508 7 N -0.382 5.382 8 C 0.046 3.954 9 C 0.051 3.949 10 C -0.176 4.176 11 C -0.176 4.176 12 C -0.567 4.567 13 H 0.061 0.939 14 C -0.171 4.171 15 N -0.537 5.537 16 Si 0.772 3.228 17 H -0.201 1.201 18 H -0.206 1.206 19 H -0.207 1.207 20 C -0.157 4.157 21 C -0.158 4.158 22 C -0.152 4.152 23 C -0.152 4.152 24 H 0.256 0.744 25 H 0.250 0.750 26 H 0.241 0.759 27 H 0.049 0.951 28 H 0.052 0.948 29 H 0.056 0.944 30 H 0.081 0.919 31 H 0.036 0.964 32 H 0.034 0.966 33 H 0.082 0.918 34 H 0.055 0.945 35 H 0.070 0.930 36 H 0.086 0.914 37 H 0.063 0.937 38 H 0.087 0.913 39 H 0.102 0.898 40 H 0.109 0.891 41 H 0.101 0.899 42 H 0.102 0.898 43 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 0.449 -17.737 11.068 20.912 hybrid contribution -0.286 1.272 -0.929 1.601 sum 0.163 -16.465 10.140 19.338 Atomic orbital electron populations 1.25627 0.96880 1.00631 0.98815 1.23613 0.95204 1.00309 1.01549 1.17844 0.82687 0.93359 0.85448 1.45329 1.54774 1.09580 1.28701 1.16243 0.80272 0.82067 0.81914 1.90869 1.43082 1.69412 1.47445 1.45207 1.54091 1.13186 1.25721 1.21074 0.97365 0.78912 0.98052 1.18366 0.92952 0.93878 0.89729 1.21638 0.97516 0.97631 1.00767 1.21647 0.98044 0.96508 1.01392 1.21294 1.30269 0.96790 1.08348 0.93912 1.25442 0.94920 1.01139 0.95596 1.69911 1.33962 1.36988 1.12850 0.85705 0.77972 0.81394 0.77731 1.20134 1.20591 1.20688 1.22671 1.00217 0.98442 0.94396 1.22516 1.01594 0.94158 0.97520 1.22363 0.99736 0.99685 0.93381 1.22458 1.00826 0.90883 1.01044 0.74391 0.74992 0.75876 0.95131 0.94798 0.94391 0.91891 0.96383 0.96591 0.91828 0.94502 0.93015 0.91361 0.93665 0.91326 0.89828 0.89064 0.89940 0.89812 0.88360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -5.47 19.25 74.32 1.43 -4.03 16 2 C -0.21 -5.97 10.26 31.12 0.32 -5.66 16 3 C 0.29 7.13 0.87 2.52 0.00 7.14 16 4 N -0.73 -19.01 5.07 -442.99 -2.24 -21.26 16 5 C 0.70 25.18 8.02 179.06 1.44 26.62 16 6 O -0.63 -28.17 14.57 -4.01 -0.06 -28.23 16 7 N -0.73 -26.15 4.96 -478.54 -2.37 -28.52 16 8 C 0.17 7.56 4.50 86.38 0.39 7.95 16 9 C 0.05 2.42 0.50 -52.93 -0.03 2.39 16 10 C -0.12 -5.26 8.08 71.98 0.58 -4.68 16 11 C -0.12 -5.32 8.08 71.98 0.58 -4.74 16 12 C -0.53 -28.44 8.01 25.60 0.21 -28.24 16 13 H 0.04 2.37 7.74 -2.91 -0.02 2.35 16 14 C 0.03 1.53 5.15 84.66 0.44 1.97 16 15 N -0.90 -48.05 9.35 21.45 0.20 -47.85 16 16 Si 0.95 43.04 29.54 68.60 2.03 45.06 16 17 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 18 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 19 H -0.28 -12.56 7.11 99.48 0.71 -11.86 16 20 C -0.12 -2.97 4.95 31.67 0.16 -2.82 16 21 C -0.12 -1.98 6.91 31.88 0.22 -1.76 16 22 C -0.11 -1.37 6.83 31.67 0.22 -1.15 16 23 C -0.11 -1.72 6.22 31.32 0.19 -1.53 16 24 H 0.24 4.65 7.80 -4.41 -0.03 4.61 16 25 H 0.41 7.80 8.08 -92.71 -0.75 7.05 16 26 H 0.40 12.43 6.18 -92.71 -0.57 11.86 16 27 H 0.03 1.46 8.14 -2.39 -0.02 1.44 16 28 H 0.03 1.61 8.14 -2.39 -0.02 1.59 16 29 H 0.04 1.41 6.86 -2.38 -0.02 1.39 16 30 H 0.06 3.12 6.07 -2.39 -0.01 3.10 16 31 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 32 H 0.01 0.70 8.14 -2.39 -0.02 0.68 16 33 H 0.06 3.17 6.07 -2.39 -0.01 3.15 16 34 H 0.04 1.38 6.86 -2.39 -0.02 1.37 16 35 H 0.26 13.35 8.31 -92.71 -0.77 12.58 16 36 H 0.07 1.80 8.05 -2.39 -0.02 1.78 16 37 H 0.04 1.42 7.69 -2.39 -0.02 1.40 16 38 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 39 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 40 H 0.09 0.77 8.14 -2.38 -0.02 0.75 16 41 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 42 H 0.08 1.22 7.66 -2.39 -0.02 1.20 16 43 H 0.10 1.09 7.44 -2.39 -0.02 1.07 16 Total: -1.00 -67.04 342.39 3.37 -63.67 By element: Atomic # 1 Polarization: 25.98 SS G_CDS: -0.32 Total: 25.66 kcal Atomic # 6 Polarization: -14.68 SS G_CDS: 6.14 Total: -8.54 kcal Atomic # 7 Polarization: -93.22 SS G_CDS: -4.42 Total: -97.64 kcal Atomic # 8 Polarization: -28.17 SS G_CDS: -0.06 Total: -28.23 kcal Atomic # 14 Polarization: 43.04 SS G_CDS: 2.03 Total: 45.06 kcal Total: -67.04 3.37 -63.67 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000883740354.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.342 kcal (2) G-P(sol) polarization free energy of solvation -67.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.672 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds