Wall clock time and date at job start Tue Mar 31 2020 01:06:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50695 * 120.00112 * 2 1 4 4 N 1.46900 * 109.47414 * 124.02840 * 3 2 1 5 5 C 1.46908 * 110.99703 * 63.62514 * 4 3 2 6 6 C 1.50695 * 109.46968 * 66.05162 * 5 4 3 7 7 H 1.08002 * 120.00122 * 359.97438 * 6 5 4 8 8 C 1.37880 * 120.00328 * 179.97438 * 6 5 4 9 9 N 1.31519 * 119.99395 * 359.97438 * 8 6 5 10 10 Si 1.86792 * 120.00196 * 179.97438 * 8 6 5 11 11 H 1.48502 * 109.47056 * 60.00520 * 10 8 6 12 12 H 1.48501 * 109.47045 * 179.97438 * 10 8 6 13 13 H 1.48493 * 109.47613 * 300.00057 * 10 8 6 14 14 C 1.46907 * 110.99987 * 299.67813 * 4 3 2 15 15 C 1.52999 * 109.46975 * 288.29471 * 14 4 3 16 16 H 1.09004 * 109.46835 * 58.29495 * 15 14 4 17 17 O 1.42905 * 109.46797 * 298.29746 * 15 14 4 18 18 C 1.52991 * 109.47305 * 178.29473 * 15 14 4 19 19 C 1.53004 * 109.47294 * 184.99733 * 18 15 14 20 20 C 1.47201 * 112.84680 * 50.33872 * 19 18 15 21 21 N 5.54290 * 58.52059 * 25.75227 * 2 1 3 22 22 C 1.53779 * 113.61518 * 279.13805 * 19 18 15 23 23 C 1.53957 * 87.01693 * 220.04833 * 22 19 18 24 24 C 1.53779 * 87.11435 * 25.36336 * 23 22 19 25 25 H 1.08005 * 119.99974 * 179.97438 * 1 2 3 26 26 H 1.07996 * 119.99919 * 359.97438 * 1 2 3 27 27 H 1.08005 * 119.99898 * 180.02562 * 2 1 3 28 28 H 1.08997 * 109.47437 * 4.03174 * 3 2 1 29 29 H 1.08999 * 109.47528 * 244.02711 * 3 2 1 30 30 H 1.09000 * 109.46740 * 186.04825 * 5 4 3 31 31 H 1.08996 * 109.47065 * 306.04658 * 5 4 3 32 32 H 0.96999 * 119.99748 * 179.97438 * 9 8 6 33 33 H 1.09004 * 109.47037 * 48.29014 * 14 4 3 34 34 H 1.08997 * 109.47279 * 168.29244 * 14 4 3 35 35 H 0.96694 * 114.00038 * 299.99645 * 17 15 14 36 36 H 1.08998 * 109.47568 * 305.00208 * 18 15 14 37 37 H 1.09003 * 109.47145 * 65.00030 * 18 15 14 38 38 H 1.09001 * 113.61489 * 334.56311 * 22 19 18 39 39 H 1.08998 * 113.61275 * 105.46996 * 22 19 18 40 40 H 1.09003 * 113.53418 * 270.80925 * 23 22 19 41 41 H 1.09001 * 113.74083 * 139.95051 * 23 22 19 42 42 H 1.08994 * 113.61594 * 220.09276 * 24 23 22 43 43 H 1.09001 * 113.68665 * 89.19413 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 2.9796 1.3416 1.1478 5 6 4.0010 0.2912 1.0398 6 6 4.8933 0.5778 -0.1402 7 1 4.7189 1.4524 -0.7494 8 6 5.9324 -0.2766 -0.4424 9 7 6.1451 -1.3414 0.2998 10 14 7.0381 0.0781 -1.9055 11 1 7.6990 1.3948 -1.7187 12 1 8.0714 -0.9829 -2.0139 13 1 6.2233 0.1049 -3.1467 14 6 2.2422 1.2307 2.4136 15 6 1.4786 2.5306 2.6745 16 1 0.7987 2.7253 1.8450 17 8 2.4055 3.6117 2.7944 18 6 0.6770 2.3998 3.9710 19 6 -0.1827 3.6501 4.1675 20 6 -0.9739 3.9930 2.9746 21 7 -1.5845 4.2576 2.0539 22 6 0.5891 4.8418 4.7584 23 6 -0.6626 5.1279 5.6078 24 6 -1.0037 3.6350 5.4678 25 1 -0.5400 -0.9354 -0.0004 26 1 -0.5400 0.9353 0.0004 27 1 1.8500 -0.9354 -0.0004 28 1 1.3575 2.1323 0.0723 29 1 2.6350 1.3947 -0.9238 30 1 4.5989 0.2709 1.9510 31 1 3.5154 -0.6749 0.9022 32 1 6.8759 -1.9427 0.0870 33 1 1.5375 0.4014 2.3521 34 1 2.9438 1.0517 3.2283 35 1 3.0424 3.5056 3.5142 36 1 0.0336 1.5218 3.9135 37 1 1.3618 2.2938 4.8124 38 1 1.4589 4.5500 5.3470 39 1 0.8117 5.6219 4.0304 40 1 -1.3793 5.7874 5.1183 41 1 -0.4389 5.4307 6.6307 42 1 -2.0651 3.4424 5.3117 43 1 -0.5709 3.0117 6.2502 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000886215804.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:06:38 Heat of formation + Delta-G solvation = 18.147004 kcal Electronic energy + Delta-G solvation = -22104.664171 eV Core-core repulsion = 18958.239926 eV Total energy + Delta-G solvation = -3146.424245 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.24135 -38.00035 -35.99470 -35.82358 -32.93733 -32.11874 -31.28626 -28.13749 -26.56432 -26.01407 -25.03907 -23.37335 -21.79401 -21.02418 -20.74690 -18.80307 -16.96588 -16.43017 -15.91978 -15.70893 -15.28585 -14.93229 -14.80212 -14.58380 -14.36044 -13.82145 -13.78265 -13.18406 -12.97178 -12.84504 -12.71210 -12.54948 -12.10044 -11.99115 -11.57154 -11.30480 -11.28980 -11.09528 -10.90616 -10.87001 -10.80550 -10.76044 -10.61886 -10.47123 -10.25891 -9.94394 -9.58687 -9.13505 -8.85785 -8.43063 -7.18653 -6.02736 -4.03294 2.64872 2.70715 2.72153 3.34631 3.38200 3.41984 3.69751 4.17327 4.28637 4.42856 4.51426 4.60697 4.76746 4.87619 5.08301 5.27979 5.32277 5.38819 5.43151 5.44412 5.47663 5.59736 5.61978 5.68594 5.72769 5.77972 5.85150 5.90369 6.03192 6.05445 6.17443 6.35472 6.42494 6.65478 7.06558 7.09710 7.33993 7.36084 7.52325 7.80684 7.99349 8.11252 8.19195 8.55164 9.04155 9.60846 11.08026 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.025209 B = 0.004073 C = 0.003834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1110.447754 B = 6872.933725 C = 7300.634076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.159 4.159 3 C 0.085 3.915 4 N -0.516 5.516 5 C 0.191 3.809 6 C -0.505 4.505 7 H 0.062 0.938 8 C 0.056 3.944 9 N -0.900 5.900 10 Si 0.896 3.104 11 H -0.276 1.276 12 H -0.288 1.288 13 H -0.278 1.278 14 C 0.021 3.979 15 C 0.112 3.888 16 H 0.089 0.911 17 O -0.542 6.542 18 C -0.135 4.135 19 C 0.011 3.989 20 C 0.235 3.765 21 N -0.433 5.433 22 C -0.108 4.108 23 C -0.149 4.149 24 C -0.121 4.121 25 H 0.087 0.913 26 H 0.087 0.913 27 H 0.112 0.888 28 H 0.057 0.943 29 H 0.091 0.909 30 H 0.028 0.972 31 H -0.005 1.005 32 H 0.261 0.739 33 H 0.036 0.964 34 H 0.070 0.930 35 H 0.368 0.632 36 H 0.080 0.920 37 H 0.089 0.911 38 H 0.100 0.900 39 H 0.079 0.921 40 H 0.078 0.922 41 H 0.076 0.924 42 H 0.072 0.928 43 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.245 7.651 12.888 19.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.253 4.253 2 C -0.179 4.179 3 C -0.043 4.043 4 N -0.239 5.239 5 C 0.066 3.934 6 C -0.543 4.543 7 H 0.081 0.919 8 C -0.145 4.145 9 N -0.540 5.540 10 Si 0.724 3.276 11 H -0.201 1.201 12 H -0.214 1.214 13 H -0.203 1.203 14 C -0.108 4.108 15 C 0.052 3.948 16 H 0.107 0.893 17 O -0.346 6.346 18 C -0.174 4.174 19 C 0.008 3.992 20 C -0.083 4.083 21 N -0.107 5.107 22 C -0.146 4.146 23 C -0.186 4.186 24 C -0.160 4.160 25 H 0.106 0.894 26 H 0.106 0.894 27 H 0.130 0.870 28 H 0.075 0.925 29 H 0.110 0.890 30 H 0.046 0.954 31 H 0.013 0.987 32 H 0.071 0.929 33 H 0.054 0.946 34 H 0.089 0.911 35 H 0.215 0.785 36 H 0.099 0.901 37 H 0.107 0.893 38 H 0.118 0.882 39 H 0.097 0.903 40 H 0.097 0.903 41 H 0.095 0.905 42 H 0.091 0.909 43 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -13.119 8.589 10.978 19.142 hybrid contribution 0.712 -1.311 -0.073 1.494 sum -12.407 7.278 10.905 18.051 Atomic orbital electron populations 1.23676 0.95973 1.00738 1.04947 1.23940 0.96149 1.01638 0.96134 1.21315 0.94138 0.92071 0.96772 1.62324 1.12308 1.50356 0.98865 1.19770 0.88579 0.87305 0.97743 1.21121 1.12489 1.08840 1.11899 0.91941 1.24961 0.97578 0.95071 0.96899 1.69945 1.31277 1.13629 1.39163 0.86583 0.80232 0.77884 0.82865 1.20136 1.21418 1.20318 1.22764 0.97233 0.95756 0.95065 1.21910 0.90124 0.87592 0.95207 0.89313 1.86611 1.47003 1.43724 1.57234 1.22343 0.98870 0.95751 1.00437 1.19133 0.94778 0.98174 0.87136 1.28293 0.93090 0.93174 0.93764 1.81227 1.10332 1.08598 1.10577 1.22970 0.96985 0.96177 0.98484 1.22996 0.98337 0.96274 1.01034 1.23038 1.00203 0.97660 0.95076 0.89435 0.89438 0.87004 0.92490 0.89049 0.95427 0.98717 0.92937 0.94634 0.91138 0.78535 0.90148 0.89285 0.88179 0.90254 0.90346 0.90542 0.90932 0.88072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -3.42 14.32 29.01 0.42 -3.00 16 2 C -0.16 -2.93 7.43 -36.03 -0.27 -3.20 16 3 C 0.09 1.69 5.47 -4.98 -0.03 1.66 16 4 N -0.52 -10.73 4.56 -237.51 -1.08 -11.81 16 5 C 0.19 4.79 4.55 -4.97 -0.02 4.77 16 6 C -0.50 -13.98 8.46 -34.44 -0.29 -14.27 16 7 H 0.06 1.74 7.12 -52.49 -0.37 1.36 16 8 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 9 N -0.90 -26.36 13.29 55.43 0.74 -25.62 16 10 Si 0.90 21.66 29.54 -169.99 -5.02 16.64 16 11 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 12 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 13 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 14 C 0.02 0.34 4.48 -3.82 -0.02 0.33 16 15 C 0.11 1.51 2.72 -26.74 -0.07 1.44 16 16 H 0.09 1.42 5.52 -51.93 -0.29 1.13 16 17 O -0.54 -7.60 12.07 -35.23 -0.43 -8.02 16 18 C -0.13 -1.26 4.45 -26.73 -0.12 -1.38 16 19 C 0.01 0.10 0.90 -156.48 -0.14 -0.04 16 20 C 0.23 2.98 12.63 -20.76 -0.26 2.72 16 21 N -0.43 -6.68 18.54 42.15 0.78 -5.90 16 22 C -0.11 -0.82 6.17 -25.83 -0.16 -0.98 16 23 C -0.15 -0.97 7.80 -25.83 -0.20 -1.17 16 24 C -0.12 -0.79 7.21 -25.92 -0.19 -0.97 16 25 H 0.09 1.25 8.06 -52.48 -0.42 0.83 16 26 H 0.09 1.35 7.84 -52.49 -0.41 0.93 16 27 H 0.11 2.28 6.78 -52.48 -0.36 1.92 16 28 H 0.06 1.07 6.30 -51.93 -0.33 0.74 16 29 H 0.09 2.00 6.77 -51.93 -0.35 1.65 16 30 H 0.03 0.74 7.86 -51.93 -0.41 0.33 16 31 H 0.00 -0.13 6.32 -51.93 -0.33 -0.46 16 32 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 33 H 0.04 0.59 6.73 -51.93 -0.35 0.24 16 34 H 0.07 1.11 7.81 -51.93 -0.41 0.71 16 35 H 0.37 3.94 9.04 45.56 0.41 4.36 16 36 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.09 0.64 7.98 -51.93 -0.41 0.22 16 38 H 0.10 0.59 7.99 -51.93 -0.41 0.18 16 39 H 0.08 0.74 8.08 -51.93 -0.42 0.32 16 40 H 0.08 0.57 8.13 -51.93 -0.42 0.15 16 41 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 42 H 0.07 0.49 8.08 -51.93 -0.42 0.07 16 43 H 0.10 0.47 8.10 -51.93 -0.42 0.05 16 LS Contribution 350.48 15.07 5.28 5.28 Total: -1.00 -31.75 350.48 -7.28 -39.03 By element: Atomic # 1 Polarization: 9.13 SS G_CDS: -6.10 Total: 3.02 kcal Atomic # 6 Polarization: -11.17 SS G_CDS: -1.45 Total: -12.62 kcal Atomic # 7 Polarization: -43.76 SS G_CDS: 0.44 Total: -43.33 kcal Atomic # 8 Polarization: -7.60 SS G_CDS: -0.43 Total: -8.02 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -31.75 -7.28 -39.03 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000886215804.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.175 kcal (2) G-P(sol) polarization free energy of solvation -31.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.028 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds