Wall clock time and date at job start Tue Mar 31 2020 01:06:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50695 * 120.00112 * 2 1 4 4 N 1.46900 * 109.47414 * 124.02840 * 3 2 1 5 5 C 1.46908 * 110.99703 * 63.62514 * 4 3 2 6 6 C 1.50695 * 109.46968 * 66.05162 * 5 4 3 7 7 H 1.08002 * 120.00122 * 359.97438 * 6 5 4 8 8 C 1.37880 * 120.00328 * 179.97438 * 6 5 4 9 9 N 1.31519 * 119.99395 * 359.97438 * 8 6 5 10 10 Si 1.86792 * 120.00196 * 179.97438 * 8 6 5 11 11 H 1.48502 * 109.47056 * 60.00520 * 10 8 6 12 12 H 1.48501 * 109.47045 * 179.97438 * 10 8 6 13 13 H 1.48493 * 109.47613 * 300.00057 * 10 8 6 14 14 C 1.46907 * 110.99987 * 299.67813 * 4 3 2 15 15 C 1.52999 * 109.46975 * 288.29471 * 14 4 3 16 16 H 1.09004 * 109.46835 * 58.29495 * 15 14 4 17 17 O 1.42905 * 109.46797 * 298.29746 * 15 14 4 18 18 C 1.52991 * 109.47305 * 178.29473 * 15 14 4 19 19 C 1.53004 * 109.47294 * 184.99733 * 18 15 14 20 20 C 1.47201 * 112.84680 * 50.33872 * 19 18 15 21 21 N 5.54290 * 58.52059 * 25.75227 * 2 1 3 22 22 C 1.53779 * 113.61518 * 279.13805 * 19 18 15 23 23 C 1.53957 * 87.01693 * 220.04833 * 22 19 18 24 24 C 1.53779 * 87.11435 * 25.36336 * 23 22 19 25 25 H 1.08005 * 119.99974 * 179.97438 * 1 2 3 26 26 H 1.07996 * 119.99919 * 359.97438 * 1 2 3 27 27 H 1.08005 * 119.99898 * 180.02562 * 2 1 3 28 28 H 1.08997 * 109.47437 * 4.03174 * 3 2 1 29 29 H 1.08999 * 109.47528 * 244.02711 * 3 2 1 30 30 H 1.09000 * 109.46740 * 186.04825 * 5 4 3 31 31 H 1.08996 * 109.47065 * 306.04658 * 5 4 3 32 32 H 0.96999 * 119.99748 * 179.97438 * 9 8 6 33 33 H 1.09004 * 109.47037 * 48.29014 * 14 4 3 34 34 H 1.08997 * 109.47279 * 168.29244 * 14 4 3 35 35 H 0.96694 * 114.00038 * 299.99645 * 17 15 14 36 36 H 1.08998 * 109.47568 * 305.00208 * 18 15 14 37 37 H 1.09003 * 109.47145 * 65.00030 * 18 15 14 38 38 H 1.09001 * 113.61489 * 334.56311 * 22 19 18 39 39 H 1.08998 * 113.61275 * 105.46996 * 22 19 18 40 40 H 1.09003 * 113.53418 * 270.80925 * 23 22 19 41 41 H 1.09001 * 113.74083 * 139.95051 * 23 22 19 42 42 H 1.08994 * 113.61594 * 220.09276 * 24 23 22 43 43 H 1.09001 * 113.68665 * 89.19413 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 2.9796 1.3416 1.1478 5 6 4.0010 0.2912 1.0398 6 6 4.8933 0.5778 -0.1402 7 1 4.7189 1.4524 -0.7494 8 6 5.9324 -0.2766 -0.4424 9 7 6.1451 -1.3414 0.2998 10 14 7.0381 0.0781 -1.9055 11 1 7.6990 1.3948 -1.7187 12 1 8.0714 -0.9829 -2.0139 13 1 6.2233 0.1049 -3.1467 14 6 2.2422 1.2307 2.4136 15 6 1.4786 2.5306 2.6745 16 1 0.7987 2.7253 1.8450 17 8 2.4055 3.6117 2.7944 18 6 0.6770 2.3998 3.9710 19 6 -0.1827 3.6501 4.1675 20 6 -0.9739 3.9930 2.9746 21 7 -1.5845 4.2576 2.0539 22 6 0.5891 4.8418 4.7584 23 6 -0.6626 5.1279 5.6078 24 6 -1.0037 3.6350 5.4678 25 1 -0.5400 -0.9354 -0.0004 26 1 -0.5400 0.9353 0.0004 27 1 1.8500 -0.9354 -0.0004 28 1 1.3575 2.1323 0.0723 29 1 2.6350 1.3947 -0.9238 30 1 4.5989 0.2709 1.9510 31 1 3.5154 -0.6749 0.9022 32 1 6.8759 -1.9427 0.0870 33 1 1.5375 0.4014 2.3521 34 1 2.9438 1.0517 3.2283 35 1 3.0424 3.5056 3.5142 36 1 0.0336 1.5218 3.9135 37 1 1.3618 2.2938 4.8124 38 1 1.4589 4.5500 5.3470 39 1 0.8117 5.6219 4.0304 40 1 -1.3793 5.7874 5.1183 41 1 -0.4389 5.4307 6.6307 42 1 -2.0651 3.4424 5.3117 43 1 -0.5709 3.0117 6.2502 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000886215804.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:06:37 Heat of formation + Delta-G solvation = -3.855690 kcal Electronic energy + Delta-G solvation = -22105.618280 eV Core-core repulsion = 18958.239926 eV Total energy + Delta-G solvation = -3147.378353 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.99610 -39.37153 -37.25615 -36.81943 -34.91095 -33.66304 -32.35062 -29.64402 -28.15726 -26.59744 -26.42816 -24.69732 -22.98174 -22.46891 -21.55877 -20.33544 -18.44178 -17.77128 -17.14564 -16.91542 -16.55427 -16.32314 -15.99759 -15.73219 -15.45414 -15.28738 -14.92442 -14.58593 -14.29633 -13.92996 -13.83784 -13.66389 -13.23515 -13.14490 -12.85429 -12.80281 -12.67367 -12.56655 -12.39450 -12.28654 -12.17972 -11.92041 -11.63129 -11.59064 -11.49912 -11.36267 -11.05426 -10.60221 -10.42278 -10.32954 -8.87551 -8.18427 -6.26595 1.30171 1.40545 1.42623 1.50519 1.71383 1.74917 2.40992 2.89807 3.14006 3.21156 3.65810 3.69974 3.79066 3.85507 3.98756 4.02901 4.12926 4.19565 4.38288 4.44208 4.54103 4.63889 4.73300 4.83073 4.91134 4.95471 4.98895 5.02516 5.03406 5.18577 5.21021 5.25255 5.25745 5.31136 5.37721 5.53232 5.63206 5.67111 5.76375 6.10718 6.35675 6.57777 6.69901 6.88766 7.12794 7.42311 8.91766 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.025209 B = 0.004073 C = 0.003834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1110.447754 B = 6872.933725 C = 7300.634076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.185 4.185 3 C 0.092 3.908 4 N -0.526 5.526 5 C 0.209 3.791 6 C -0.521 4.521 7 H 0.054 0.946 8 C 0.007 3.993 9 N -0.932 5.932 10 Si 0.960 3.040 11 H -0.270 1.270 12 H -0.281 1.281 13 H -0.273 1.273 14 C 0.021 3.979 15 C 0.123 3.877 16 H 0.062 0.938 17 O -0.558 6.558 18 C -0.124 4.124 19 C 0.001 3.999 20 C 0.251 3.749 21 N -0.492 5.492 22 C -0.106 4.106 23 C -0.146 4.146 24 C -0.107 4.107 25 H 0.111 0.889 26 H 0.097 0.903 27 H 0.087 0.913 28 H 0.068 0.932 29 H 0.062 0.938 30 H 0.006 0.994 31 H -0.028 1.028 32 H 0.264 0.736 33 H 0.036 0.964 34 H 0.077 0.923 35 H 0.384 0.616 36 H 0.087 0.913 37 H 0.123 0.877 38 H 0.125 0.875 39 H 0.056 0.944 40 H 0.063 0.937 41 H 0.098 0.902 42 H 0.070 0.930 43 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.823 7.983 14.605 21.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.205 4.205 3 C -0.036 4.036 4 N -0.248 5.248 5 C 0.083 3.917 6 C -0.559 4.559 7 H 0.073 0.927 8 C -0.191 4.191 9 N -0.572 5.572 10 Si 0.785 3.215 11 H -0.195 1.195 12 H -0.207 1.207 13 H -0.198 1.198 14 C -0.107 4.107 15 C 0.063 3.937 16 H 0.080 0.920 17 O -0.364 6.364 18 C -0.163 4.163 19 C -0.003 4.003 20 C -0.066 4.066 21 N -0.168 5.168 22 C -0.144 4.144 23 C -0.183 4.183 24 C -0.146 4.146 25 H 0.129 0.871 26 H 0.116 0.884 27 H 0.105 0.895 28 H 0.086 0.914 29 H 0.080 0.920 30 H 0.024 0.976 31 H -0.010 1.010 32 H 0.072 0.928 33 H 0.054 0.946 34 H 0.095 0.905 35 H 0.232 0.768 36 H 0.105 0.895 37 H 0.141 0.859 38 H 0.144 0.856 39 H 0.075 0.925 40 H 0.082 0.918 41 H 0.117 0.883 42 H 0.088 0.912 43 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -13.711 8.936 12.708 20.721 hybrid contribution 0.833 -1.392 -0.583 1.724 sum -12.879 7.543 12.125 19.229 Atomic orbital electron populations 1.23850 0.94780 1.02230 1.00530 1.23576 0.96939 0.99754 1.00225 1.21149 0.93808 0.93362 0.95243 1.62219 1.12995 1.48452 1.01133 1.19380 0.89085 0.87527 0.95733 1.21421 1.13196 1.08605 1.12704 0.92732 1.25768 0.98971 0.94821 0.99561 1.70053 1.31954 1.14467 1.40744 0.85574 0.78391 0.77972 0.79521 1.19483 1.20668 1.19801 1.22900 0.97234 0.97669 0.92923 1.21723 0.89597 0.85589 0.96804 0.92002 1.86580 1.47713 1.43745 1.58412 1.22294 0.98932 0.96147 0.98946 1.19482 0.95361 0.98594 0.86837 1.29125 0.92090 0.91599 0.93749 1.81221 1.12505 1.10580 1.12494 1.23059 0.98285 0.94789 0.98272 1.22972 0.97229 0.96250 1.01843 1.23092 0.99845 0.97956 0.93675 0.87128 0.88438 0.89454 0.91414 0.92015 0.97580 1.00995 0.92762 0.94571 0.90483 0.76762 0.89455 0.85893 0.85639 0.92483 0.91831 0.88346 0.91166 0.85094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.33 14.32 67.78 0.97 -4.36 16 2 C -0.19 -6.92 7.43 25.64 0.19 -6.73 16 3 C 0.09 3.77 5.47 85.56 0.47 4.24 16 4 N -0.53 -22.33 4.56 -905.36 -4.13 -26.46 16 5 C 0.21 10.87 4.55 85.55 0.39 11.26 16 6 C -0.52 -29.67 8.46 25.60 0.22 -29.45 16 7 H 0.05 3.13 7.12 -2.91 -0.02 3.11 16 8 C 0.01 0.39 5.46 84.65 0.46 0.85 16 9 N -0.93 -55.50 13.29 21.45 0.28 -55.22 16 10 Si 0.96 44.85 29.54 68.60 2.03 46.87 16 11 H -0.27 -12.26 7.11 99.48 0.71 -11.56 16 12 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 13 H -0.27 -12.44 7.11 99.48 0.71 -11.74 16 14 C 0.02 0.69 4.48 86.30 0.39 1.07 16 15 C 0.12 3.17 2.72 30.59 0.08 3.26 16 16 H 0.06 1.95 5.52 -2.39 -0.01 1.94 16 17 O -0.56 -14.95 12.07 -148.98 -1.80 -16.74 16 18 C -0.12 -1.95 4.45 30.59 0.14 -1.81 16 19 C 0.00 0.01 0.90 -53.46 -0.05 -0.04 16 20 C 0.25 6.20 12.63 89.44 1.13 7.33 16 21 N -0.49 -15.36 18.54 20.01 0.37 -14.99 16 22 C -0.11 -1.33 6.17 31.18 0.19 -1.14 16 23 C -0.15 -1.46 7.80 31.18 0.24 -1.21 16 24 C -0.11 -1.00 7.21 31.12 0.22 -0.77 16 25 H 0.11 2.87 8.06 -2.91 -0.02 2.85 16 26 H 0.10 2.81 7.84 -2.91 -0.02 2.79 16 27 H 0.09 3.72 6.78 -2.91 -0.02 3.70 16 28 H 0.07 2.59 6.30 -2.39 -0.02 2.57 16 29 H 0.06 2.83 6.77 -2.39 -0.02 2.82 16 30 H 0.01 0.34 7.86 -2.39 -0.02 0.32 16 31 H -0.03 -1.54 6.32 -2.39 -0.02 -1.56 16 32 H 0.26 14.85 8.31 -92.71 -0.77 14.08 16 33 H 0.04 1.17 6.73 -2.39 -0.02 1.15 16 34 H 0.08 2.36 7.81 -2.39 -0.02 2.34 16 35 H 0.38 7.42 9.04 -74.06 -0.67 6.75 16 36 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 37 H 0.12 1.16 7.98 -2.39 -0.02 1.14 16 38 H 0.13 0.96 7.99 -2.39 -0.02 0.94 16 39 H 0.06 0.99 8.08 -2.39 -0.02 0.97 16 40 H 0.06 0.83 8.13 -2.39 -0.02 0.81 16 41 H 0.10 0.59 8.14 -2.39 -0.02 0.57 16 42 H 0.07 0.73 8.08 -2.39 -0.02 0.71 16 43 H 0.13 0.51 8.10 -2.39 -0.02 0.49 16 Total: -1.00 -71.71 350.48 2.13 -69.58 By element: Atomic # 1 Polarization: 14.13 SS G_CDS: 0.33 Total: 14.45 kcal Atomic # 6 Polarization: -22.54 SS G_CDS: 5.05 Total: -17.50 kcal Atomic # 7 Polarization: -93.20 SS G_CDS: -3.47 Total: -96.67 kcal Atomic # 8 Polarization: -14.95 SS G_CDS: -1.80 Total: -16.74 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 2.03 Total: 46.87 kcal Total: -71.71 2.13 -69.58 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000886215804.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.726 kcal (2) G-P(sol) polarization free energy of solvation -71.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.581 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds