Wall clock time and date at job start Tue Mar 31 2020 00:30:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17396 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 C 1.53000 * 109.47392 * 123.90303 * 3 2 1 5 5 H 1.08999 * 110.88277 * 308.87689 * 4 3 2 6 6 C 1.55149 * 111.00626 * 184.99765 * 4 3 2 7 7 C 1.54322 * 103.10331 * 206.33368 * 6 4 3 8 8 N 1.47485 * 107.03465 * 22.24037 * 7 6 4 9 9 C 1.34776 * 125.59415 * 181.06581 * 8 7 6 10 10 O 1.21585 * 120.00313 * 179.97438 * 9 8 7 11 11 N 1.34780 * 119.99934 * 359.95332 * 9 8 7 12 12 C 1.46492 * 119.99965 * 179.97438 * 11 9 8 13 13 C 1.53006 * 109.47297 * 180.02562 * 12 11 9 14 14 C 1.52997 * 109.46629 * 299.99737 * 13 12 11 15 15 C 1.53001 * 109.47042 * 59.99778 * 13 12 11 16 16 C 1.50694 * 109.47037 * 180.02562 * 13 12 11 17 17 H 1.08001 * 120.00749 * 357.00393 * 16 13 12 18 18 C 1.37876 * 119.99655 * 177.00559 * 16 13 12 19 19 N 1.31513 * 120.00419 * 5.54050 * 18 16 13 20 20 Si 1.86808 * 120.00042 * 185.54251 * 18 16 13 21 21 H 1.48495 * 109.47265 * 84.99756 * 20 18 16 22 22 H 1.48503 * 109.46892 * 205.00116 * 20 18 16 23 23 H 1.48504 * 109.46966 * 324.99888 * 20 18 16 24 24 C 1.47428 * 108.76075 * 1.02775 * 8 7 6 25 25 H 4.44649 * 5.63466 * 179.97438 * 4 1 2 26 26 H 1.09003 * 109.47466 * 3.90206 * 3 2 1 27 27 H 1.08998 * 109.46898 * 243.90275 * 3 2 1 28 28 H 1.09003 * 110.72135 * 324.78797 * 6 4 3 29 29 H 1.09002 * 110.72483 * 87.88391 * 6 4 3 30 30 H 1.09003 * 109.87886 * 141.69732 * 7 6 4 31 31 H 1.08994 * 109.88683 * 262.86403 * 7 6 4 32 32 H 0.96998 * 120.00094 * 359.97438 * 11 9 8 33 33 H 1.09000 * 109.47667 * 299.99878 * 12 11 9 34 34 H 1.08997 * 109.47398 * 59.99830 * 12 11 9 35 35 H 1.09003 * 109.47262 * 53.93526 * 14 13 12 36 36 H 1.09007 * 109.46849 * 173.92782 * 14 13 12 37 37 H 1.08991 * 109.48015 * 293.93457 * 14 13 12 38 38 H 1.09004 * 109.46566 * 60.00441 * 15 13 12 39 39 H 1.08998 * 109.46618 * 180.02562 * 15 13 12 40 40 H 1.08994 * 109.47060 * 300.00427 * 15 13 12 41 41 H 0.96998 * 120.00804 * 180.02562 * 19 18 16 42 42 H 1.08999 * 110.36734 * 217.05763 * 24 8 7 43 43 H 1.09000 * 110.46018 * 94.77413 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1557 0.8055 -1.1972 5 1 2.6827 0.4704 -2.1203 6 6 4.7015 0.7256 -1.3036 7 6 5.0699 2.0338 -2.0347 8 7 3.9556 2.9762 -1.8219 9 6 3.8811 4.2276 -2.3169 10 8 2.9107 4.9196 -2.0770 11 7 4.8827 4.7120 -3.0777 12 6 4.8015 6.0719 -3.6163 13 6 6.0569 6.3707 -4.4384 14 6 7.2926 6.2491 -3.5445 15 6 6.1613 5.3707 -5.5917 16 6 5.9736 7.7698 -4.9919 17 1 5.0906 8.3673 -4.8194 18 6 7.0248 8.2873 -5.7187 19 7 8.0528 7.5253 -6.0220 20 14 6.9889 10.0711 -6.2725 21 1 7.5019 10.9384 -5.1818 22 1 7.8427 10.2327 -7.4767 23 1 5.5934 10.4599 -6.5993 24 6 2.9369 2.3236 -0.9794 25 1 -1.0501 -0.0002 0.0000 26 1 3.0098 -1.0245 -0.0699 27 1 3.0091 0.4529 0.9229 28 1 5.1552 0.6965 -0.3129 29 1 5.0034 -0.1421 -1.8901 30 1 5.9904 2.4440 -1.6192 31 1 5.1955 1.8404 -3.0999 32 1 5.6573 4.1602 -3.2686 33 1 3.9214 6.1585 -4.2535 34 1 4.7267 6.7842 -2.7948 35 1 7.2952 5.2732 -3.0589 36 1 8.1919 6.3554 -4.1514 37 1 7.2713 7.0320 -2.7865 38 1 5.2808 5.4574 -6.2285 39 1 7.0558 5.5834 -6.1770 40 1 6.2216 4.3589 -5.1909 41 1 8.7925 7.8894 -6.5330 42 1 1.9364 2.6126 -1.3014 43 1 3.0868 2.5819 0.0688 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000889223458.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:30:22 Heat of formation + Delta-G solvation = 14.042408 kcal Electronic energy + Delta-G solvation = -21753.552013 eV Core-core repulsion = 18606.949780 eV Total energy + Delta-G solvation = -3146.602234 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.04042 -38.02859 -36.24333 -34.57492 -33.19844 -31.79032 -30.61906 -29.56269 -27.02401 -25.70597 -25.45207 -24.64619 -23.01282 -20.79727 -19.68862 -18.77278 -18.37913 -17.85781 -16.35811 -15.84928 -15.33953 -15.01214 -14.69567 -14.38074 -14.19497 -13.79419 -13.33690 -13.12906 -12.99251 -12.82446 -12.58996 -12.27091 -12.15771 -11.75948 -11.38716 -11.24867 -11.16250 -10.97390 -10.84033 -10.67290 -10.38467 -10.35279 -10.31477 -10.19605 -9.73377 -9.59760 -9.28539 -8.77281 -8.63039 -8.37354 -8.08434 -6.00642 -4.09155 2.58020 2.63603 2.97033 3.30707 3.36917 3.41108 3.64831 4.01387 4.30828 4.39725 4.41854 4.61400 4.69047 5.03694 5.09647 5.18486 5.26572 5.39182 5.44235 5.56639 5.60150 5.74297 5.80472 5.88948 6.02387 6.18675 6.39762 6.41249 6.54293 6.83512 6.84556 6.95699 7.05670 7.13830 7.37189 7.41538 7.45610 7.58253 7.72546 8.01858 8.14153 8.40032 8.47688 8.90428 9.07974 9.56101 11.01518 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.040774 B = 0.003269 C = 0.003119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 686.552575 B = 8563.526120 C = 8974.885792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.188 4.188 3 C 0.000 4.000 4 C -0.099 4.099 5 H 0.089 0.911 6 C -0.124 4.124 7 C 0.099 3.901 8 N -0.644 5.644 9 C 0.715 3.285 10 O -0.597 6.597 11 N -0.730 5.730 12 C 0.150 3.850 13 C 0.056 3.944 14 C -0.128 4.128 15 C -0.129 4.129 16 C -0.506 4.506 17 H 0.058 0.942 18 C 0.067 3.933 19 N -0.886 5.886 20 Si 0.893 3.107 21 H -0.280 1.280 22 H -0.288 1.288 23 H -0.275 1.275 24 C 0.134 3.866 25 H 0.216 0.784 26 H 0.092 0.908 27 H 0.090 0.910 28 H 0.080 0.920 29 H 0.084 0.916 30 H 0.068 0.932 31 H 0.067 0.933 32 H 0.393 0.607 33 H 0.052 0.948 34 H 0.052 0.948 35 H 0.005 0.995 36 H 0.081 0.919 37 H 0.029 0.971 38 H 0.026 0.974 39 H 0.085 0.915 40 H 0.004 0.996 41 H 0.260 0.740 42 H 0.075 0.925 43 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.284 -17.121 9.760 20.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.188 4.188 3 C -0.037 4.037 4 C -0.118 4.118 5 H 0.107 0.893 6 C -0.162 4.162 7 C -0.024 4.024 8 N -0.384 5.384 9 C 0.417 3.583 10 O -0.476 6.476 11 N -0.385 5.385 12 C 0.027 3.973 13 C 0.056 3.944 14 C -0.185 4.185 15 C -0.187 4.187 16 C -0.545 4.545 17 H 0.076 0.924 18 C -0.134 4.134 19 N -0.525 5.525 20 Si 0.721 3.279 21 H -0.206 1.206 22 H -0.214 1.214 23 H -0.200 1.200 24 C 0.010 3.990 25 H 0.232 0.768 26 H 0.110 0.890 27 H 0.109 0.891 28 H 0.098 0.902 29 H 0.102 0.898 30 H 0.086 0.914 31 H 0.085 0.915 32 H 0.228 0.772 33 H 0.070 0.930 34 H 0.071 0.929 35 H 0.024 0.976 36 H 0.100 0.900 37 H 0.048 0.952 38 H 0.045 0.955 39 H 0.104 0.896 40 H 0.023 0.977 41 H 0.070 0.930 42 H 0.094 0.906 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -5.801 -16.451 9.768 19.993 hybrid contribution 0.215 0.702 -0.426 0.849 sum -5.586 -15.749 9.342 19.145 Atomic orbital electron populations 1.24922 0.96020 1.00916 1.00578 1.23054 0.94523 1.00544 1.00701 1.18663 0.84900 1.01326 0.98785 1.22374 0.95871 0.94806 0.98752 0.89271 1.22668 0.94798 0.97161 1.01549 1.22047 0.90477 0.89426 1.00491 1.47672 1.22129 1.13101 1.55522 1.15607 0.83715 0.79889 0.79094 1.90884 1.33588 1.57886 1.65258 1.45515 1.21185 1.18177 1.53599 1.21585 1.00347 0.78822 0.96574 1.18358 0.89190 0.95503 0.91382 1.21794 1.02333 0.95880 0.98534 1.21834 1.02562 0.94502 0.99760 1.20977 1.02419 0.97821 1.33288 0.92388 1.24873 0.95494 0.97593 0.95467 1.69824 1.08548 1.34958 1.39125 0.86596 0.78026 0.85282 0.78015 1.20632 1.21356 1.19953 1.22009 0.92707 0.89914 0.94379 0.76752 0.88979 0.89140 0.90169 0.89765 0.91399 0.91500 0.77150 0.92983 0.92930 0.97590 0.90045 0.95179 0.95460 0.89616 0.97712 0.93037 0.90626 0.91921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -1.85 19.25 29.55 0.57 -1.28 16 2 C -0.19 -1.77 13.07 -37.12 -0.49 -2.25 16 3 C 0.00 0.00 5.23 -29.52 -0.15 -0.15 16 4 C -0.10 -0.85 2.98 -88.47 -0.26 -1.11 16 5 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 6 C -0.12 -0.90 6.41 -24.90 -0.16 -1.06 16 7 C 0.10 1.05 6.18 -2.81 -0.02 1.04 16 8 N -0.64 -9.46 3.34 -175.86 -0.59 -10.05 16 9 C 0.72 13.84 8.49 -86.92 -0.74 13.11 16 10 O -0.60 -13.91 16.60 5.29 0.09 -13.82 16 11 N -0.73 -13.98 4.86 -65.23 -0.32 -14.30 16 12 C 0.15 3.33 4.50 -4.04 -0.02 3.31 16 13 C 0.06 1.33 0.50 -155.66 -0.08 1.26 16 14 C -0.13 -2.92 8.03 37.16 0.30 -2.62 16 15 C -0.13 -2.95 8.11 37.16 0.30 -2.65 16 16 C -0.51 -13.47 8.01 -34.44 -0.28 -13.75 16 17 H 0.06 1.56 7.75 -52.49 -0.41 1.15 16 18 C 0.07 1.78 5.13 -17.82 -0.09 1.69 16 19 N -0.89 -23.77 9.45 55.43 0.52 -23.25 16 20 Si 0.89 20.92 29.54 -169.99 -5.02 15.90 16 21 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 22 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 23 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 24 C 0.13 1.65 6.11 -2.52 -0.02 1.64 16 25 H 0.22 1.27 7.80 -54.08 -0.42 0.84 16 26 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.09 0.56 7.96 -51.93 -0.41 0.15 16 28 H 0.08 0.48 8.04 -51.93 -0.42 0.07 16 29 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.39 6.81 5.14 -40.82 -0.21 6.60 16 33 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 34 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16 35 H 0.01 0.10 6.71 -51.93 -0.35 -0.24 16 36 H 0.08 2.02 6.25 -51.92 -0.32 1.70 16 37 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.09 2.15 6.11 -51.93 -0.32 1.84 16 40 H 0.00 0.08 6.86 -51.93 -0.36 -0.28 16 41 H 0.26 6.73 8.31 -40.82 -0.34 6.39 16 42 H 0.08 1.08 8.04 -51.93 -0.42 0.67 16 43 H 0.06 0.74 7.90 -51.93 -0.41 0.33 16 LS Contribution 347.26 15.07 5.23 5.23 Total: -1.00 -31.09 347.26 -8.19 -39.28 By element: Atomic # 1 Polarization: 10.82 SS G_CDS: -6.98 Total: 3.84 kcal Atomic # 6 Polarization: -1.70 SS G_CDS: -1.13 Total: -2.83 kcal Atomic # 7 Polarization: -47.22 SS G_CDS: -0.38 Total: -47.60 kcal Atomic # 8 Polarization: -13.91 SS G_CDS: 0.09 Total: -13.82 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -31.09 -8.19 -39.28 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889223458.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.320 kcal (2) G-P(sol) polarization free energy of solvation -31.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.278 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds