Wall clock time and date at job start Tue Mar 31 2020 00:30:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 C 1.53003 * 109.47178 * 109.04557 * 3 2 1 5 5 H 1.09009 * 110.91033 * 51.10198 * 4 3 2 6 6 C 1.55161 * 111.00349 * 174.99497 * 4 3 2 7 7 C 1.54320 * 103.09820 * 153.66811 * 6 4 3 8 8 N 1.47022 * 107.27289 * 337.72295 * 7 6 4 9 9 C 1.34777 * 125.64802 * 178.90470 * 8 7 6 10 10 O 1.21586 * 119.99902 * 180.02562 * 9 8 7 11 11 N 1.34776 * 120.00018 * 0.02562 * 9 8 7 12 12 C 1.46505 * 119.99907 * 179.97438 * 11 9 8 13 13 C 1.53005 * 109.46945 * 179.97438 * 12 11 9 14 14 C 1.52991 * 109.47430 * 300.00177 * 13 12 11 15 15 C 1.53004 * 109.46641 * 60.00588 * 13 12 11 16 16 C 1.50699 * 109.46811 * 180.02562 * 13 12 11 17 17 H 1.08005 * 120.00331 * 1.35371 * 16 13 12 18 18 C 1.37875 * 119.99903 * 181.34889 * 16 13 12 19 19 N 1.31516 * 120.00431 * 193.97833 * 18 16 13 20 20 Si 1.86803 * 119.99949 * 13.98096 * 18 16 13 21 21 H 1.48496 * 109.47224 * 84.54695 * 20 18 16 22 22 H 1.48496 * 109.47178 * 204.54744 * 20 18 16 23 23 H 1.48499 * 109.46805 * 324.54681 * 20 18 16 24 24 C 1.47427 * 108.70409 * 358.93865 * 8 7 6 25 25 H 4.44649 * 5.63330 * 180.02562 * 4 1 2 26 26 H 1.09002 * 109.47421 * 349.04584 * 3 2 1 27 27 H 1.09003 * 109.47204 * 229.04640 * 3 2 1 28 28 H 1.08995 * 110.71920 * 35.21827 * 6 4 3 29 29 H 1.08999 * 110.72045 * 272.12250 * 6 4 3 30 30 H 1.08998 * 109.88425 * 97.13818 * 7 6 4 31 31 H 1.09003 * 109.88427 * 218.14760 * 7 6 4 32 32 H 0.96998 * 119.99941 * 359.97438 * 11 9 8 33 33 H 1.08998 * 109.47328 * 299.99990 * 12 11 9 34 34 H 1.09003 * 109.46989 * 59.99853 * 12 11 9 35 35 H 1.09009 * 109.47056 * 69.36778 * 14 13 12 36 36 H 1.09000 * 109.46920 * 189.36554 * 14 13 12 37 37 H 1.09001 * 109.47415 * 309.37034 * 14 13 12 38 38 H 1.08998 * 109.47312 * 59.99672 * 15 13 12 39 39 H 1.08998 * 109.46403 * 179.97438 * 15 13 12 40 40 H 1.08998 * 109.47187 * 299.99594 * 15 13 12 41 41 H 0.96995 * 120.00175 * 179.97438 * 19 18 16 42 42 H 1.08999 * 110.36411 * 142.96872 * 24 8 7 43 43 H 1.09005 * 110.36583 * 265.18615 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1558 0.4716 -1.3636 5 1 2.6822 1.4098 -1.6532 6 6 4.7016 0.6059 -1.3633 7 6 5.0706 0.4014 -2.8477 8 7 3.9640 -0.3355 -3.4751 9 6 3.8939 -0.6924 -4.7729 10 8 2.9260 -1.3025 -5.1842 11 7 4.8968 -0.3730 -5.6147 12 6 4.8209 -0.7614 -7.0253 13 6 6.0769 -0.2804 -7.7550 14 6 6.1759 1.2427 -7.6500 15 6 7.3129 -0.9172 -7.1165 16 6 5.9985 -0.6795 -9.2061 17 1 5.1291 -1.2026 -9.5761 18 6 7.0366 -0.3766 -10.0613 19 7 6.8656 -0.4696 -11.3620 20 14 8.6861 0.1659 -9.3727 21 1 9.4957 -1.0300 -9.0269 22 1 9.4058 0.9735 -10.3900 23 1 8.4682 0.9855 -8.1537 24 6 2.9432 -0.6188 -2.4499 25 1 -1.0501 0.0001 0.0002 26 1 3.0098 -1.0081 0.1953 27 1 3.0090 0.6744 0.7761 28 1 5.1556 -0.1668 -0.7430 29 1 5.0025 1.5970 -1.0240 30 1 5.1956 1.3683 -3.3352 31 1 5.9931 -0.1742 -2.9244 32 1 5.6688 0.1141 -5.2866 33 1 4.7500 -1.8465 -7.1001 34 1 3.9405 -0.3075 -7.4803 35 1 6.3988 1.5222 -6.6202 36 1 6.9710 1.6009 -8.3040 37 1 5.2286 1.6900 -7.9510 38 1 7.2423 -2.0023 -7.1912 39 1 8.2075 -0.5749 -7.6366 40 1 7.3694 -0.6283 -6.0670 41 1 7.5959 -0.2561 -11.9637 42 1 1.9437 -0.5382 -2.8773 43 1 3.0954 -1.6120 -2.0272 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000889223459.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:30:25 Heat of formation + Delta-G solvation = 33.988554 kcal Electronic energy + Delta-G solvation = -21847.482660 eV Core-core repulsion = 18701.745356 eV Total energy + Delta-G solvation = -3145.737304 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.16046 -38.16770 -36.59454 -34.65091 -33.24962 -31.90022 -31.24013 -29.62403 -27.23887 -26.37998 -25.54680 -24.75251 -23.12894 -20.87923 -19.75102 -19.19373 -18.42148 -17.88099 -16.43243 -16.10081 -15.56869 -15.26495 -14.91815 -14.43308 -14.32652 -14.04216 -13.49601 -13.25392 -13.03368 -12.94431 -12.84464 -12.54040 -12.43619 -12.18746 -12.03655 -11.83895 -11.30439 -11.26340 -11.04782 -10.43066 -10.40957 -10.35698 -10.28959 -10.16146 -10.05465 -9.81032 -9.12255 -8.73741 -8.67826 -8.46816 -8.23871 -6.13659 -4.10782 2.53944 2.59932 2.86708 3.24332 3.31220 3.38844 3.53612 3.95708 4.23932 4.31996 4.36228 4.48648 4.60935 4.95827 5.03000 5.11620 5.17039 5.33097 5.37556 5.47504 5.52455 5.67746 5.74032 5.77579 5.83051 5.95874 6.05938 6.09711 6.23362 6.37454 6.50334 6.55391 6.64385 6.72214 6.84620 7.02035 7.23394 7.30997 7.37950 7.44945 7.74068 8.29731 8.47951 8.91448 8.95806 9.50189 10.99503 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.038388 B = 0.003507 C = 0.003320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 729.225455 B = 7981.157867 C = 8432.841283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.189 4.189 3 C 0.001 3.999 4 C -0.099 4.099 5 H 0.089 0.911 6 C -0.124 4.124 7 C 0.099 3.901 8 N -0.643 5.643 9 C 0.717 3.283 10 O -0.592 6.592 11 N -0.735 5.735 12 C 0.160 3.840 13 C 0.029 3.971 14 C -0.140 4.140 15 C -0.146 4.146 16 C -0.512 4.512 17 H 0.077 0.923 18 C 0.075 3.925 19 N -0.891 5.891 20 Si 0.886 3.114 21 H -0.286 1.286 22 H -0.306 1.306 23 H -0.249 1.249 24 C 0.133 3.867 25 H 0.216 0.784 26 H 0.090 0.910 27 H 0.092 0.908 28 H 0.080 0.920 29 H 0.084 0.916 30 H 0.065 0.935 31 H 0.066 0.934 32 H 0.392 0.608 33 H 0.060 0.940 34 H 0.061 0.939 35 H 0.020 0.980 36 H 0.056 0.944 37 H 0.047 0.953 38 H 0.053 0.947 39 H 0.041 0.959 40 H 0.028 0.972 41 H 0.264 0.736 42 H 0.076 0.924 43 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.502 4.039 24.105 24.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.190 4.190 3 C -0.036 4.036 4 C -0.118 4.118 5 H 0.108 0.892 6 C -0.162 4.162 7 C -0.025 4.025 8 N -0.383 5.383 9 C 0.419 3.581 10 O -0.471 6.471 11 N -0.390 5.390 12 C 0.037 3.963 13 C 0.028 3.972 14 C -0.198 4.198 15 C -0.203 4.203 16 C -0.550 4.550 17 H 0.095 0.905 18 C -0.127 4.127 19 N -0.528 5.528 20 Si 0.718 3.282 21 H -0.214 1.214 22 H -0.234 1.234 23 H -0.175 1.175 24 C 0.009 3.991 25 H 0.233 0.767 26 H 0.109 0.891 27 H 0.110 0.890 28 H 0.099 0.901 29 H 0.102 0.898 30 H 0.084 0.916 31 H 0.085 0.915 32 H 0.226 0.774 33 H 0.078 0.922 34 H 0.079 0.921 35 H 0.039 0.961 36 H 0.074 0.926 37 H 0.066 0.934 38 H 0.072 0.928 39 H 0.059 0.941 40 H 0.047 0.953 41 H 0.074 0.926 42 H 0.095 0.905 43 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -4.134 3.564 23.451 24.078 hybrid contribution 1.223 0.481 0.344 1.358 sum -2.911 4.045 23.795 24.311 Atomic orbital electron populations 1.24934 0.96029 1.00903 1.00415 1.23038 0.94512 1.00625 1.00776 1.18649 0.84937 1.02989 0.97053 1.22453 0.95795 0.99669 0.93868 0.89240 1.22669 0.94900 1.03127 0.95492 1.21956 0.90582 0.96612 0.93331 1.47551 1.22281 1.61175 1.07295 1.15551 0.83619 0.79837 0.79132 1.90907 1.33608 1.46780 1.75773 1.45503 1.21464 1.61268 1.10758 1.21395 0.99321 0.99420 0.76182 1.18726 0.90231 0.92196 0.96092 1.22282 1.01426 0.98134 0.97946 1.22347 0.99309 1.01238 0.97422 1.20723 1.05729 1.38674 0.89889 0.90478 1.24970 0.98795 0.94470 0.94496 1.69950 1.32341 1.48405 1.02121 0.87290 0.84310 0.78674 0.77887 1.21365 1.23427 1.17542 1.22113 0.92660 0.97179 0.87128 0.76728 0.89137 0.88968 0.90141 0.89762 0.91623 0.91531 0.77380 0.92173 0.92084 0.96110 0.92552 0.93393 0.92773 0.94078 0.95319 0.92563 0.90529 0.91819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -1.76 19.25 29.55 0.57 -1.19 16 2 C -0.19 -1.69 13.09 -37.12 -0.49 -2.18 16 3 C 0.00 0.00 5.23 -29.52 -0.15 -0.15 16 4 C -0.10 -0.78 3.00 -88.21 -0.26 -1.04 16 5 H 0.09 0.76 8.14 -51.92 -0.42 0.34 16 6 C -0.12 -0.80 6.41 -24.90 -0.16 -0.96 16 7 C 0.10 0.95 6.15 -3.07 -0.02 0.93 16 8 N -0.64 -8.79 3.33 -175.94 -0.59 -9.37 16 9 C 0.72 13.03 8.49 -86.92 -0.74 12.29 16 10 O -0.59 -13.22 16.60 5.29 0.09 -13.13 16 11 N -0.74 -12.95 4.96 -65.22 -0.32 -13.27 16 12 C 0.16 3.34 4.49 -4.04 -0.02 3.32 16 13 C 0.03 0.64 0.50 -155.66 -0.08 0.56 16 14 C -0.14 -2.90 7.53 37.15 0.28 -2.62 16 15 C -0.15 -3.00 7.52 37.16 0.28 -2.72 16 16 C -0.51 -13.91 8.62 -34.44 -0.30 -14.21 16 17 H 0.08 2.30 7.99 -52.48 -0.42 1.88 16 18 C 0.08 2.10 5.32 -17.82 -0.09 2.01 16 19 N -0.89 -26.81 13.96 55.43 0.77 -26.04 16 20 Si 0.89 21.14 22.79 -169.99 -3.87 17.27 16 21 H -0.29 -6.80 7.10 56.52 0.40 -6.40 16 22 H -0.31 -7.46 7.11 56.52 0.40 -7.06 16 23 H -0.25 -5.40 4.65 56.52 0.26 -5.14 16 24 C 0.13 1.54 6.14 -2.27 -0.01 1.53 16 25 H 0.22 1.20 7.80 -54.09 -0.42 0.77 16 26 H 0.09 0.52 7.98 -51.93 -0.41 0.10 16 27 H 0.09 0.44 8.14 -51.93 -0.42 0.01 16 28 H 0.08 0.43 8.04 -51.93 -0.42 0.01 16 29 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 32 H 0.39 6.02 5.24 -40.82 -0.21 5.80 16 33 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 34 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 35 H 0.02 0.35 7.13 -51.92 -0.37 -0.02 16 36 H 0.06 1.23 4.30 -51.93 -0.22 1.01 16 37 H 0.05 0.98 8.12 -51.93 -0.42 0.56 16 38 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 39 H 0.04 0.88 2.25 -51.93 -0.12 0.77 16 40 H 0.03 0.49 6.86 -51.93 -0.36 0.13 16 41 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 42 H 0.08 1.04 8.04 -51.93 -0.42 0.63 16 43 H 0.06 0.71 7.93 -51.93 -0.41 0.30 16 LS Contribution 337.35 15.07 5.08 5.08 Total: -1.00 -33.25 337.35 -6.89 -40.14 By element: Atomic # 1 Polarization: 10.61 SS G_CDS: -6.86 Total: 3.75 kcal Atomic # 6 Polarization: -3.24 SS G_CDS: -1.19 Total: -4.43 kcal Atomic # 7 Polarization: -48.54 SS G_CDS: -0.14 Total: -48.68 kcal Atomic # 8 Polarization: -13.22 SS G_CDS: 0.09 Total: -13.13 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -3.87 Total: 17.27 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -33.25 -6.89 -40.14 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889223459.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.129 kcal (2) G-P(sol) polarization free energy of solvation -33.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.141 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds