Wall clock time and date at job start Tue Mar 31 2020 00:30:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 C 1.53003 * 109.47178 * 109.04557 * 3 2 1 5 5 H 1.09009 * 110.91033 * 51.10198 * 4 3 2 6 6 C 1.55161 * 111.00349 * 174.99497 * 4 3 2 7 7 C 1.54320 * 103.09820 * 153.66811 * 6 4 3 8 8 N 1.47022 * 107.27289 * 337.72295 * 7 6 4 9 9 C 1.34777 * 125.64802 * 178.90470 * 8 7 6 10 10 O 1.21586 * 119.99902 * 180.02562 * 9 8 7 11 11 N 1.34776 * 120.00018 * 0.02562 * 9 8 7 12 12 C 1.46505 * 119.99907 * 179.97438 * 11 9 8 13 13 C 1.53005 * 109.46945 * 179.97438 * 12 11 9 14 14 C 1.52991 * 109.47430 * 300.00177 * 13 12 11 15 15 C 1.53004 * 109.46641 * 60.00588 * 13 12 11 16 16 C 1.50699 * 109.46811 * 180.02562 * 13 12 11 17 17 H 1.08005 * 120.00331 * 1.35371 * 16 13 12 18 18 C 1.37875 * 119.99903 * 181.34889 * 16 13 12 19 19 N 1.31516 * 120.00431 * 193.97833 * 18 16 13 20 20 Si 1.86803 * 119.99949 * 13.98096 * 18 16 13 21 21 H 1.48496 * 109.47224 * 84.54695 * 20 18 16 22 22 H 1.48496 * 109.47178 * 204.54744 * 20 18 16 23 23 H 1.48499 * 109.46805 * 324.54681 * 20 18 16 24 24 C 1.47427 * 108.70409 * 358.93865 * 8 7 6 25 25 H 4.44649 * 5.63330 * 180.02562 * 4 1 2 26 26 H 1.09002 * 109.47421 * 349.04584 * 3 2 1 27 27 H 1.09003 * 109.47204 * 229.04640 * 3 2 1 28 28 H 1.08995 * 110.71920 * 35.21827 * 6 4 3 29 29 H 1.08999 * 110.72045 * 272.12250 * 6 4 3 30 30 H 1.08998 * 109.88425 * 97.13818 * 7 6 4 31 31 H 1.09003 * 109.88427 * 218.14760 * 7 6 4 32 32 H 0.96998 * 119.99941 * 359.97438 * 11 9 8 33 33 H 1.08998 * 109.47328 * 299.99990 * 12 11 9 34 34 H 1.09003 * 109.46989 * 59.99853 * 12 11 9 35 35 H 1.09009 * 109.47056 * 69.36778 * 14 13 12 36 36 H 1.09000 * 109.46920 * 189.36554 * 14 13 12 37 37 H 1.09001 * 109.47415 * 309.37034 * 14 13 12 38 38 H 1.08998 * 109.47312 * 59.99672 * 15 13 12 39 39 H 1.08998 * 109.46403 * 179.97438 * 15 13 12 40 40 H 1.08998 * 109.47187 * 299.99594 * 15 13 12 41 41 H 0.96995 * 120.00175 * 179.97438 * 19 18 16 42 42 H 1.08999 * 110.36411 * 142.96872 * 24 8 7 43 43 H 1.09005 * 110.36583 * 265.18615 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1558 0.4716 -1.3636 5 1 2.6822 1.4098 -1.6532 6 6 4.7016 0.6059 -1.3633 7 6 5.0706 0.4014 -2.8477 8 7 3.9640 -0.3355 -3.4751 9 6 3.8939 -0.6924 -4.7729 10 8 2.9260 -1.3025 -5.1842 11 7 4.8968 -0.3730 -5.6147 12 6 4.8209 -0.7614 -7.0253 13 6 6.0769 -0.2804 -7.7550 14 6 6.1759 1.2427 -7.6500 15 6 7.3129 -0.9172 -7.1165 16 6 5.9985 -0.6795 -9.2061 17 1 5.1291 -1.2026 -9.5761 18 6 7.0366 -0.3766 -10.0613 19 7 6.8656 -0.4696 -11.3620 20 14 8.6861 0.1659 -9.3727 21 1 9.4957 -1.0300 -9.0269 22 1 9.4058 0.9735 -10.3900 23 1 8.4682 0.9855 -8.1537 24 6 2.9432 -0.6188 -2.4499 25 1 -1.0501 0.0001 0.0002 26 1 3.0098 -1.0081 0.1953 27 1 3.0090 0.6744 0.7761 28 1 5.1556 -0.1668 -0.7430 29 1 5.0025 1.5970 -1.0240 30 1 5.1956 1.3683 -3.3352 31 1 5.9931 -0.1742 -2.9244 32 1 5.6688 0.1141 -5.2866 33 1 4.7500 -1.8465 -7.1001 34 1 3.9405 -0.3075 -7.4803 35 1 6.3988 1.5222 -6.6202 36 1 6.9710 1.6009 -8.3040 37 1 5.2286 1.6900 -7.9510 38 1 7.2423 -2.0023 -7.1912 39 1 8.2075 -0.5749 -7.6366 40 1 7.3694 -0.6283 -6.0670 41 1 7.5959 -0.2561 -11.9637 42 1 1.9437 -0.5382 -2.8773 43 1 3.0954 -1.6120 -2.0272 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000889223459.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:30:24 Heat of formation + Delta-G solvation = 11.216233 kcal Electronic energy + Delta-G solvation = -21848.470141 eV Core-core repulsion = 18701.745356 eV Total energy + Delta-G solvation = -3146.724786 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.37846 -39.32425 -38.20561 -35.49125 -34.90988 -33.49133 -32.43521 -30.33929 -28.33848 -28.01183 -27.19052 -26.45081 -24.12153 -21.56375 -21.08389 -20.93745 -19.16979 -18.99241 -18.06925 -17.37315 -17.19540 -16.75013 -16.17532 -15.59004 -15.30672 -14.98914 -14.88260 -14.62874 -14.48320 -14.14949 -13.99819 -13.84215 -13.77973 -13.74229 -13.23523 -12.91853 -12.52358 -12.38485 -12.16209 -11.96296 -11.94513 -11.77696 -11.63294 -11.36286 -11.07082 -11.03112 -10.93556 -10.61958 -10.40000 -10.18560 -9.46876 -8.29911 -6.32222 1.37066 1.38714 1.52066 1.60552 1.93249 1.97448 2.12500 2.35420 3.04969 3.09140 3.43559 3.64769 3.73318 4.00526 4.06076 4.30704 4.31862 4.39680 4.41603 4.52770 4.64226 4.73087 4.80813 4.81493 4.84670 4.86707 4.90058 4.93016 5.03368 5.04835 5.14022 5.17230 5.25300 5.32485 5.41170 5.41963 5.53977 5.72464 5.79215 6.06743 6.31037 6.71807 6.76584 7.01257 7.32527 7.56143 8.87509 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.038388 B = 0.003507 C = 0.003320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 729.225455 B = 7981.157867 C = 8432.841283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.211 4.211 3 C 0.003 3.997 4 C -0.085 4.085 5 H 0.082 0.918 6 C -0.110 4.110 7 C 0.085 3.915 8 N -0.639 5.639 9 C 0.710 3.290 10 O -0.645 6.645 11 N -0.722 5.722 12 C 0.176 3.824 13 C 0.030 3.970 14 C -0.139 4.139 15 C -0.145 4.145 16 C -0.520 4.520 17 H 0.026 0.974 18 C 0.016 3.984 19 N -0.947 5.947 20 Si 0.947 3.053 21 H -0.280 1.280 22 H -0.314 1.314 23 H -0.202 1.202 24 C 0.124 3.876 25 H 0.233 0.767 26 H 0.102 0.898 27 H 0.120 0.880 28 H 0.100 0.900 29 H 0.112 0.888 30 H 0.074 0.926 31 H 0.080 0.920 32 H 0.407 0.593 33 H 0.038 0.962 34 H 0.035 0.965 35 H 0.065 0.935 36 H 0.048 0.952 37 H 0.038 0.962 38 H 0.045 0.955 39 H 0.037 0.963 40 H 0.072 0.928 41 H 0.265 0.735 42 H 0.045 0.955 43 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.017 5.794 28.377 28.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.211 4.211 3 C -0.033 4.033 4 C -0.104 4.104 5 H 0.101 0.899 6 C -0.147 4.147 7 C -0.037 4.037 8 N -0.377 5.377 9 C 0.412 3.588 10 O -0.528 6.528 11 N -0.378 5.378 12 C 0.052 3.948 13 C 0.028 3.972 14 C -0.196 4.196 15 C -0.202 4.202 16 C -0.558 4.558 17 H 0.044 0.956 18 C -0.181 4.181 19 N -0.586 5.586 20 Si 0.776 3.224 21 H -0.208 1.208 22 H -0.244 1.244 23 H -0.126 1.126 24 C 0.001 3.999 25 H 0.250 0.750 26 H 0.121 0.879 27 H 0.138 0.862 28 H 0.119 0.881 29 H 0.130 0.870 30 H 0.092 0.908 31 H 0.098 0.902 32 H 0.245 0.755 33 H 0.056 0.944 34 H 0.053 0.947 35 H 0.084 0.916 36 H 0.066 0.934 37 H 0.057 0.943 38 H 0.065 0.935 39 H 0.056 0.944 40 H 0.091 0.909 41 H 0.074 0.926 42 H 0.064 0.936 43 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -1.634 5.351 27.817 28.374 hybrid contribution 0.270 -0.129 -0.992 1.036 sum -1.363 5.222 26.825 27.362 Atomic orbital electron populations 1.25656 0.97159 1.01041 1.00392 1.23797 0.95769 1.00652 1.00870 1.18794 0.83446 1.04374 0.96735 1.22346 0.97369 0.97668 0.93054 0.89916 1.22703 0.93044 1.05525 0.93458 1.22371 0.89536 0.96571 0.95184 1.47590 1.23975 1.60231 1.05871 1.15743 0.82880 0.79628 0.80585 1.90870 1.35546 1.49091 1.77245 1.45087 1.22101 1.61455 1.09158 1.20905 0.97962 0.97809 0.78147 1.18643 0.91703 0.93823 0.93001 1.22201 1.00839 0.96080 1.00487 1.22274 0.97374 1.00720 0.99808 1.21023 1.03984 1.37722 0.93118 0.95602 1.25894 1.03060 0.94732 0.94461 1.70117 1.33714 1.50772 1.04037 0.86295 0.78417 0.79008 0.78695 1.20754 1.24398 1.12553 1.22318 0.90765 0.99198 0.87604 0.75039 0.87948 0.86201 0.88122 0.86966 0.90750 0.90177 0.75536 0.94351 0.94676 0.91642 0.93364 0.94281 0.93550 0.94441 0.90875 0.92612 0.93648 0.91320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.23 -3.69 19.25 74.32 1.43 -2.26 16 2 C -0.21 -3.44 13.09 31.12 0.41 -3.04 16 3 C 0.00 0.03 5.23 28.79 0.15 0.18 16 4 C -0.09 -1.08 3.00 -9.23 -0.03 -1.11 16 5 H 0.08 1.20 8.14 -2.38 -0.02 1.18 16 6 C -0.11 -0.86 6.41 31.78 0.20 -0.65 16 7 C 0.09 1.26 6.15 86.73 0.53 1.80 16 8 N -0.64 -16.23 3.33 -828.80 -2.76 -18.99 16 9 C 0.71 25.44 8.49 179.05 1.52 26.96 16 10 O -0.65 -29.78 16.60 -3.99 -0.07 -29.84 16 11 N -0.72 -24.22 4.96 -478.51 -2.38 -26.60 16 12 C 0.18 7.48 4.49 86.38 0.39 7.87 16 13 C 0.03 1.28 0.50 -52.93 -0.03 1.25 16 14 C -0.14 -5.32 7.53 71.98 0.54 -4.78 16 15 C -0.15 -5.45 7.52 71.98 0.54 -4.91 16 16 C -0.52 -29.25 8.62 25.60 0.22 -29.03 16 17 H 0.03 1.66 7.99 -2.91 -0.02 1.63 16 18 C 0.02 0.90 5.32 84.65 0.45 1.36 16 19 N -0.95 -59.32 13.96 21.45 0.30 -59.02 16 20 Si 0.95 42.57 22.79 68.60 1.56 44.13 16 21 H -0.28 -12.31 7.10 99.48 0.71 -11.61 16 22 H -0.31 -14.56 7.11 99.48 0.71 -13.85 16 23 H -0.20 -7.56 4.65 99.48 0.46 -7.10 16 24 C 0.12 2.74 6.14 87.02 0.53 3.28 16 25 H 0.23 2.44 7.80 -4.41 -0.03 2.41 16 26 H 0.10 0.80 7.98 -2.39 -0.02 0.78 16 27 H 0.12 0.58 8.14 -2.39 -0.02 0.56 16 28 H 0.10 0.46 8.04 -2.39 -0.02 0.44 16 29 H 0.11 0.37 8.14 -2.39 -0.02 0.35 16 30 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 31 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 32 H 0.41 10.85 5.24 -92.71 -0.49 10.37 16 33 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 34 H 0.03 1.65 8.14 -2.39 -0.02 1.63 16 35 H 0.06 1.92 7.13 -2.38 -0.02 1.91 16 36 H 0.05 1.93 4.30 -2.39 -0.01 1.92 16 37 H 0.04 1.54 8.12 -2.39 -0.02 1.52 16 38 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 39 H 0.04 1.45 2.25 -2.39 -0.01 1.44 16 40 H 0.07 2.10 6.86 -2.39 -0.02 2.08 16 41 H 0.27 15.58 8.31 -92.71 -0.77 14.81 16 42 H 0.04 1.27 8.04 -2.39 -0.02 1.25 16 43 H 0.07 1.44 7.93 -2.38 -0.02 1.42 16 Total: -1.00 -78.52 337.35 3.79 -74.72 By element: Atomic # 1 Polarization: 18.41 SS G_CDS: 0.26 Total: 18.68 kcal Atomic # 6 Polarization: -9.95 SS G_CDS: 6.87 Total: -3.08 kcal Atomic # 7 Polarization: -99.77 SS G_CDS: -4.83 Total: -104.60 kcal Atomic # 8 Polarization: -29.78 SS G_CDS: -0.07 Total: -29.84 kcal Atomic # 14 Polarization: 42.57 SS G_CDS: 1.56 Total: 44.13 kcal Total: -78.52 3.79 -74.72 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889223459.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.939 kcal (2) G-P(sol) polarization free energy of solvation -78.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.723 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds