Wall clock time and date at job start Tue Mar 31 2020 00:30:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17391 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 H 1.08996 * 109.69985 * 262.39782 * 3 2 1 5 5 C 1.52761 * 109.43556 * 22.56318 * 3 2 1 6 6 C 1.53044 * 109.37821 * 65.42326 * 5 3 2 7 7 C 1.53035 * 109.53909 * 61.24291 * 6 5 3 8 8 C 1.53196 * 109.31224 * 298.63033 * 7 6 5 9 9 N 1.46927 * 108.77284 * 54.63835 * 8 7 6 10 10 C 1.34775 * 120.63156 * 126.37440 * 9 8 7 11 11 O 1.21586 * 120.00038 * 185.59833 * 10 9 8 12 12 N 1.34777 * 119.99892 * 5.58558 * 10 9 8 13 13 C 1.46499 * 119.99538 * 185.32866 * 12 10 9 14 14 C 1.53011 * 109.46790 * 180.02562 * 13 12 10 15 15 C 1.52998 * 109.47063 * 59.99923 * 14 13 12 16 16 C 1.52997 * 109.46732 * 300.00080 * 14 13 12 17 17 C 1.50698 * 109.47113 * 179.97438 * 14 13 12 18 18 H 1.08002 * 119.99803 * 3.75227 * 17 14 13 19 19 C 1.37875 * 119.99985 * 183.75021 * 17 14 13 20 20 N 1.31512 * 119.99906 * 353.43203 * 19 17 14 21 21 Si 1.86803 * 119.99801 * 173.43323 * 19 17 14 22 22 H 1.48493 * 109.47191 * 59.99989 * 21 19 17 23 23 H 1.48497 * 109.47113 * 299.99632 * 21 19 17 24 24 H 1.48503 * 109.46607 * 179.97438 * 21 19 17 25 25 H 4.19104 * 14.98144 * 359.97438 * 4 2 1 26 26 H 1.08999 * 109.56703 * 305.39247 * 5 3 2 27 27 H 1.09000 * 109.35983 * 185.33411 * 5 3 2 28 28 H 1.08998 * 109.46435 * 301.21571 * 6 5 3 29 29 H 1.09007 * 109.44491 * 181.24925 * 6 5 3 30 30 H 1.09003 * 109.50014 * 178.67991 * 7 6 5 31 31 H 1.09003 * 109.52362 * 58.59827 * 7 6 5 32 32 H 1.08991 * 109.58545 * 294.84575 * 8 7 6 33 33 H 1.09001 * 109.58418 * 174.41943 * 8 7 6 34 34 H 0.97001 * 120.00170 * 5.33168 * 12 10 9 35 35 H 1.08995 * 109.47288 * 60.00771 * 13 12 10 36 36 H 1.09000 * 109.47398 * 300.00268 * 13 12 10 37 37 H 1.08993 * 109.47327 * 174.31594 * 15 14 13 38 38 H 1.08998 * 109.47218 * 294.31639 * 15 14 13 39 39 H 1.09008 * 109.47182 * 54.31616 * 15 14 13 40 40 H 1.08995 * 109.47285 * 305.63301 * 16 14 13 41 41 H 1.09000 * 109.47651 * 65.64500 * 16 14 13 42 42 H 1.09003 * 109.46530 * 185.63666 * 16 14 13 43 43 H 0.97002 * 120.00176 * 4.71131 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0133 0.1366 1.0171 5 6 3.1549 -1.3294 -0.5527 6 6 2.7576 -1.4525 -2.0256 7 6 3.4005 -0.3174 -2.8257 8 6 2.8895 1.0270 -2.2980 9 7 3.1380 1.0924 -0.8513 10 6 3.8093 2.1314 -0.3162 11 8 4.0975 2.1253 0.8650 12 7 4.1613 3.1769 -1.0904 13 6 4.9908 4.2507 -0.5382 14 6 5.2425 5.3066 -1.6166 15 6 3.9061 5.8846 -2.0862 16 6 5.9644 4.6627 -2.8020 17 6 6.0953 6.4115 -1.0484 18 1 6.4752 6.3364 -0.0402 19 6 6.3906 7.5184 -1.8156 20 7 6.0389 7.5532 -3.0824 21 14 7.2902 8.9685 -1.0558 22 1 8.6120 8.5205 -0.5487 23 1 6.4881 9.5148 0.0682 24 1 7.4860 10.0228 -2.0831 25 1 -1.0501 0.0005 -0.0003 26 1 2.7158 -2.1515 0.0124 27 1 4.2407 -1.3656 -0.4645 28 1 1.6731 -1.3914 -2.1156 29 1 3.1010 -2.4110 -2.4151 30 1 3.1363 -0.4191 -3.8783 31 1 4.4841 -0.3629 -2.7165 32 1 1.8198 1.1118 -2.4892 33 1 3.4176 1.8398 -2.7965 34 1 3.8654 3.2183 -2.0133 35 1 5.9428 3.8388 -0.2033 36 1 4.4764 4.7096 0.3061 37 1 4.0888 6.7057 -2.7793 38 1 3.3300 5.1070 -2.5878 39 1 3.3471 6.2530 -1.2259 40 1 6.8676 4.1642 -2.4502 41 1 5.3072 3.9329 -3.2748 42 1 6.2327 5.4325 -3.5256 43 1 5.5125 6.8311 -3.4596 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000895302545.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:30:18 Heat of formation + Delta-G solvation = 26.671358 kcal Electronic energy + Delta-G solvation = -22467.147265 eV Core-core repulsion = 19321.092664 eV Total energy + Delta-G solvation = -3146.054601 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.41553 -38.01102 -36.64187 -34.02265 -33.13666 -32.71113 -30.72488 -30.23400 -26.27578 -26.05507 -25.46556 -24.12319 -23.52494 -21.29407 -20.06704 -18.98510 -18.39300 -17.64257 -16.59735 -15.96789 -15.46503 -14.95282 -14.58246 -14.55337 -14.06582 -13.74536 -13.65263 -13.51540 -12.97190 -12.84600 -12.64438 -12.44267 -11.79279 -11.57470 -11.32902 -11.26803 -11.20544 -10.92230 -10.87416 -10.64514 -10.62321 -10.59394 -10.17104 -10.08118 -9.88864 -9.75623 -9.50179 -8.83543 -8.52436 -8.30394 -8.22387 -6.25915 -4.10247 2.31735 2.73050 3.23497 3.44671 3.46013 3.49076 3.64192 4.16492 4.24871 4.52426 4.61733 4.69547 4.72408 4.89988 5.20662 5.31998 5.32927 5.46885 5.56598 5.62726 5.71022 5.76235 5.84600 5.87808 5.99357 6.12489 6.20152 6.25564 6.47758 6.55482 6.63350 6.69995 6.81004 6.93199 7.06744 7.09327 7.20443 7.48541 7.49610 7.66287 8.18918 8.29466 8.40472 8.83931 8.91542 9.60181 10.99998 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.032356 B = 0.003971 C = 0.003843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 865.176706 B = 7048.725232 C = 7285.124995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.186 4.186 3 C 0.265 3.735 4 H 0.121 0.879 5 C -0.122 4.122 6 C -0.118 4.118 7 C -0.134 4.134 8 C 0.110 3.890 9 N -0.627 5.627 10 C 0.705 3.295 11 O -0.594 6.594 12 N -0.734 5.734 13 C 0.157 3.843 14 C 0.041 3.959 15 C -0.144 4.144 16 C -0.142 4.142 17 C -0.585 4.585 18 H 0.052 0.948 19 C 0.027 3.973 20 N -0.917 5.917 21 Si 1.065 2.935 22 H -0.288 1.288 23 H -0.288 1.288 24 H -0.283 1.283 25 H 0.216 0.784 26 H 0.077 0.923 27 H 0.078 0.922 28 H 0.065 0.935 29 H 0.066 0.934 30 H 0.075 0.925 31 H 0.070 0.930 32 H 0.065 0.935 33 H 0.081 0.919 34 H 0.393 0.607 35 H 0.054 0.946 36 H 0.056 0.944 37 H 0.072 0.928 38 H 0.014 0.986 39 H 0.037 0.963 40 H 0.037 0.963 41 H 0.013 0.987 42 H 0.071 0.929 43 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.587 -16.761 -0.704 18.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.187 4.187 3 C 0.161 3.839 4 H 0.139 0.861 5 C -0.161 4.161 6 C -0.156 4.156 7 C -0.172 4.172 8 C -0.013 4.013 9 N -0.364 5.364 10 C 0.406 3.594 11 O -0.473 6.473 12 N -0.389 5.389 13 C 0.034 3.966 14 C 0.040 3.960 15 C -0.202 4.202 16 C -0.200 4.200 17 C -0.624 4.624 18 H 0.071 0.929 19 C -0.177 4.177 20 N -0.558 5.558 21 Si 0.893 3.107 22 H -0.215 1.215 23 H -0.214 1.214 24 H -0.209 1.209 25 H 0.233 0.767 26 H 0.096 0.904 27 H 0.096 0.904 28 H 0.083 0.917 29 H 0.085 0.915 30 H 0.093 0.907 31 H 0.089 0.911 32 H 0.084 0.916 33 H 0.099 0.901 34 H 0.230 0.770 35 H 0.072 0.928 36 H 0.074 0.926 37 H 0.090 0.910 38 H 0.033 0.967 39 H 0.056 0.944 40 H 0.056 0.944 41 H 0.032 0.968 42 H 0.089 0.911 43 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -7.634 -15.223 -0.201 17.031 hybrid contribution -1.129 -1.473 -0.124 1.860 sum -8.762 -16.696 -0.325 18.858 Atomic orbital electron populations 1.24900 0.95810 0.99989 1.00898 1.23474 0.94610 1.00492 1.00138 1.17710 0.82860 0.86550 0.96795 0.86118 1.21826 1.01936 0.95631 0.96661 1.21506 1.00869 0.98460 0.94764 1.21909 1.01300 0.94413 0.99615 1.21618 1.00820 0.98280 0.80596 1.47283 1.59891 1.22231 1.07035 1.15940 0.78432 0.79868 0.85117 1.90875 1.61008 1.80803 1.14606 1.45668 1.56207 1.22016 1.15048 1.21488 0.92340 0.85628 0.97175 1.18537 0.93338 0.92553 0.91547 1.22028 0.97163 1.00282 1.00716 1.22063 0.98764 0.99059 1.00147 1.21738 1.34576 1.04084 1.01981 0.92943 1.25664 0.97223 1.00089 0.94759 1.70885 1.35534 1.37274 1.12065 0.83601 0.76012 0.75814 0.75229 1.21494 1.21438 1.20877 0.76671 0.90442 0.90378 0.91671 0.91529 0.90663 0.91124 0.91628 0.90062 0.77041 0.92790 0.92592 0.90964 0.96709 0.94358 0.94421 0.96847 0.91073 0.90353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.11 19.25 29.55 0.57 -1.55 16 2 C -0.19 -2.31 11.32 -37.12 -0.42 -2.73 16 3 C 0.26 3.43 3.06 -70.60 -0.22 3.21 16 4 H 0.12 1.76 6.99 -51.93 -0.36 1.40 16 5 C -0.12 -1.20 5.50 -26.83 -0.15 -1.34 16 6 C -0.12 -1.03 5.72 -26.69 -0.15 -1.18 16 7 C -0.13 -1.25 6.08 -26.61 -0.16 -1.41 16 8 C 0.11 1.27 6.02 -3.71 -0.02 1.25 16 9 N -0.63 -9.06 2.66 -174.37 -0.46 -9.52 16 10 C 0.70 13.10 8.29 -86.92 -0.72 12.38 16 11 O -0.59 -13.14 15.77 5.29 0.08 -13.06 16 12 N -0.73 -13.57 4.88 -65.22 -0.32 -13.89 16 13 C 0.16 3.42 4.51 -4.04 -0.02 3.40 16 14 C 0.04 0.96 0.50 -155.66 -0.08 0.88 16 15 C -0.14 -3.23 7.88 37.16 0.29 -2.94 16 16 C -0.14 -3.15 7.93 37.16 0.29 -2.85 16 17 C -0.59 -15.67 8.01 -34.44 -0.28 -15.94 16 18 H 0.05 1.43 7.75 -52.49 -0.41 1.02 16 19 C 0.03 0.72 5.09 -17.82 -0.09 0.63 16 20 N -0.92 -25.79 12.20 55.43 0.68 -25.12 16 21 Si 1.06 24.51 29.91 -169.99 -5.08 19.43 16 22 H -0.29 -6.43 7.11 56.52 0.40 -6.02 16 23 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 24 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 25 H 0.22 1.52 7.80 -54.09 -0.42 1.10 16 26 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.06 0.58 7.35 -51.93 -0.38 0.20 16 29 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 32 H 0.07 0.72 7.98 -51.93 -0.41 0.30 16 33 H 0.08 0.94 5.75 -51.93 -0.30 0.64 16 34 H 0.39 6.54 3.86 -40.82 -0.16 6.38 16 35 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16 36 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 37 H 0.07 1.77 5.18 -51.93 -0.27 1.51 16 38 H 0.01 0.28 7.03 -51.93 -0.37 -0.09 16 39 H 0.04 0.86 8.14 -51.92 -0.42 0.44 16 40 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 41 H 0.01 0.24 7.03 -51.93 -0.37 -0.12 16 42 H 0.07 1.73 5.27 -51.93 -0.27 1.46 16 43 H 0.28 7.61 3.51 -40.82 -0.14 7.46 16 LS Contribution 334.70 15.07 5.04 5.04 Total: -1.00 -30.97 334.70 -7.67 -38.64 By element: Atomic # 1 Polarization: 13.14 SS G_CDS: -6.46 Total: 6.67 kcal Atomic # 6 Polarization: -7.04 SS G_CDS: -1.15 Total: -8.19 kcal Atomic # 7 Polarization: -48.43 SS G_CDS: -0.11 Total: -48.53 kcal Atomic # 8 Polarization: -13.14 SS G_CDS: 0.08 Total: -13.06 kcal Atomic # 14 Polarization: 24.51 SS G_CDS: -5.08 Total: 19.43 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -30.97 -7.67 -38.64 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000895302545.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.310 kcal (2) G-P(sol) polarization free energy of solvation -30.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.639 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds