Wall clock time and date at job start Tue Mar 31 2020 00:30:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17391 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 H 1.08996 * 109.69985 * 262.39782 * 3 2 1 5 5 C 1.52761 * 109.43556 * 22.56318 * 3 2 1 6 6 C 1.53044 * 109.37821 * 65.42326 * 5 3 2 7 7 C 1.53035 * 109.53909 * 61.24291 * 6 5 3 8 8 C 1.53196 * 109.31224 * 298.63033 * 7 6 5 9 9 N 1.46927 * 108.77284 * 54.63835 * 8 7 6 10 10 C 1.34775 * 120.63156 * 126.37440 * 9 8 7 11 11 O 1.21586 * 120.00038 * 185.59833 * 10 9 8 12 12 N 1.34777 * 119.99892 * 5.58558 * 10 9 8 13 13 C 1.46499 * 119.99538 * 185.32866 * 12 10 9 14 14 C 1.53011 * 109.46790 * 180.02562 * 13 12 10 15 15 C 1.52998 * 109.47063 * 59.99923 * 14 13 12 16 16 C 1.52997 * 109.46732 * 300.00080 * 14 13 12 17 17 C 1.50698 * 109.47113 * 179.97438 * 14 13 12 18 18 H 1.08002 * 119.99803 * 3.75227 * 17 14 13 19 19 C 1.37875 * 119.99985 * 183.75021 * 17 14 13 20 20 N 1.31512 * 119.99906 * 353.43203 * 19 17 14 21 21 Si 1.86803 * 119.99801 * 173.43323 * 19 17 14 22 22 H 1.48493 * 109.47191 * 59.99989 * 21 19 17 23 23 H 1.48497 * 109.47113 * 299.99632 * 21 19 17 24 24 H 1.48503 * 109.46607 * 179.97438 * 21 19 17 25 25 H 4.19104 * 14.98144 * 359.97438 * 4 2 1 26 26 H 1.08999 * 109.56703 * 305.39247 * 5 3 2 27 27 H 1.09000 * 109.35983 * 185.33411 * 5 3 2 28 28 H 1.08998 * 109.46435 * 301.21571 * 6 5 3 29 29 H 1.09007 * 109.44491 * 181.24925 * 6 5 3 30 30 H 1.09003 * 109.50014 * 178.67991 * 7 6 5 31 31 H 1.09003 * 109.52362 * 58.59827 * 7 6 5 32 32 H 1.08991 * 109.58545 * 294.84575 * 8 7 6 33 33 H 1.09001 * 109.58418 * 174.41943 * 8 7 6 34 34 H 0.97001 * 120.00170 * 5.33168 * 12 10 9 35 35 H 1.08995 * 109.47288 * 60.00771 * 13 12 10 36 36 H 1.09000 * 109.47398 * 300.00268 * 13 12 10 37 37 H 1.08993 * 109.47327 * 174.31594 * 15 14 13 38 38 H 1.08998 * 109.47218 * 294.31639 * 15 14 13 39 39 H 1.09008 * 109.47182 * 54.31616 * 15 14 13 40 40 H 1.08995 * 109.47285 * 305.63301 * 16 14 13 41 41 H 1.09000 * 109.47651 * 65.64500 * 16 14 13 42 42 H 1.09003 * 109.46530 * 185.63666 * 16 14 13 43 43 H 0.97002 * 120.00176 * 4.71131 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0133 0.1366 1.0171 5 6 3.1549 -1.3294 -0.5527 6 6 2.7576 -1.4525 -2.0256 7 6 3.4005 -0.3174 -2.8257 8 6 2.8895 1.0270 -2.2980 9 7 3.1380 1.0924 -0.8513 10 6 3.8093 2.1314 -0.3162 11 8 4.0975 2.1253 0.8650 12 7 4.1613 3.1769 -1.0904 13 6 4.9908 4.2507 -0.5382 14 6 5.2425 5.3066 -1.6166 15 6 3.9061 5.8846 -2.0862 16 6 5.9644 4.6627 -2.8020 17 6 6.0953 6.4115 -1.0484 18 1 6.4752 6.3364 -0.0402 19 6 6.3906 7.5184 -1.8156 20 7 6.0389 7.5532 -3.0824 21 14 7.2902 8.9685 -1.0558 22 1 8.6120 8.5205 -0.5487 23 1 6.4881 9.5148 0.0682 24 1 7.4860 10.0228 -2.0831 25 1 -1.0501 0.0005 -0.0003 26 1 2.7158 -2.1515 0.0124 27 1 4.2407 -1.3656 -0.4645 28 1 1.6731 -1.3914 -2.1156 29 1 3.1010 -2.4110 -2.4151 30 1 3.1363 -0.4191 -3.8783 31 1 4.4841 -0.3629 -2.7165 32 1 1.8198 1.1118 -2.4892 33 1 3.4176 1.8398 -2.7965 34 1 3.8654 3.2183 -2.0133 35 1 5.9428 3.8388 -0.2033 36 1 4.4764 4.7096 0.3061 37 1 4.0888 6.7057 -2.7793 38 1 3.3300 5.1070 -2.5878 39 1 3.3471 6.2530 -1.2259 40 1 6.8676 4.1642 -2.4502 41 1 5.3072 3.9329 -3.2748 42 1 6.2327 5.4325 -3.5256 43 1 5.5125 6.8311 -3.4596 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000895302545.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:30:18 Heat of formation + Delta-G solvation = 9.404384 kcal Electronic energy + Delta-G solvation = -22467.896017 eV Core-core repulsion = 19321.092664 eV Total energy + Delta-G solvation = -3146.803353 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.69796 -39.36152 -38.30144 -35.53881 -34.20840 -33.87606 -32.20379 -31.43525 -27.93597 -27.88624 -26.95252 -25.68430 -24.47296 -22.30058 -21.34549 -20.75126 -19.84566 -18.55615 -18.46897 -17.25435 -16.77860 -16.12413 -15.81063 -15.61670 -15.55231 -15.35844 -14.82736 -14.73032 -14.52159 -14.28510 -14.24767 -13.62819 -13.36615 -13.22569 -12.78333 -12.62854 -12.54890 -12.42583 -12.14494 -12.00148 -11.90622 -11.73277 -11.68947 -11.54193 -11.41818 -11.13393 -11.03504 -10.51226 -10.30581 -10.22940 -9.64945 -8.37914 -6.23678 1.23578 1.57850 1.63138 1.82697 1.84745 2.00127 2.18222 2.60839 2.95785 3.25669 3.34541 3.79936 3.90137 3.93384 4.05114 4.15855 4.33169 4.38157 4.43531 4.45690 4.59770 4.76879 4.78824 4.80196 4.84909 4.87947 4.96655 4.98733 5.02240 5.10427 5.14340 5.15610 5.18964 5.39767 5.41955 5.49005 5.62380 5.81675 5.84889 6.17086 6.32099 6.62455 6.74126 6.90366 7.45381 7.52304 8.89813 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.032356 B = 0.003971 C = 0.003843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 865.176706 B = 7048.725232 C = 7285.124995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.230 4.230 3 C 0.259 3.741 4 H 0.093 0.907 5 C -0.117 4.117 6 C -0.113 4.113 7 C -0.130 4.130 8 C 0.103 3.897 9 N -0.618 5.618 10 C 0.700 3.300 11 O -0.637 6.637 12 N -0.726 5.726 13 C 0.175 3.825 14 C 0.036 3.964 15 C -0.133 4.133 16 C -0.131 4.131 17 C -0.604 4.604 18 H 0.037 0.963 19 C -0.013 4.013 20 N -0.937 5.937 21 Si 1.103 2.897 22 H -0.278 1.278 23 H -0.278 1.278 24 H -0.284 1.284 25 H 0.250 0.750 26 H 0.094 0.906 27 H 0.071 0.929 28 H 0.067 0.933 29 H 0.087 0.913 30 H 0.100 0.900 31 H 0.062 0.938 32 H 0.077 0.923 33 H 0.080 0.920 34 H 0.404 0.596 35 H 0.037 0.963 36 H 0.034 0.966 37 H 0.051 0.949 38 H 0.046 0.954 39 H 0.028 0.972 40 H 0.030 0.970 41 H 0.047 0.953 42 H 0.049 0.951 43 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.038 -18.343 -1.873 20.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.231 4.231 3 C 0.156 3.844 4 H 0.111 0.889 5 C -0.155 4.155 6 C -0.151 4.151 7 C -0.168 4.168 8 C -0.019 4.019 9 N -0.355 5.355 10 C 0.402 3.598 11 O -0.519 6.519 12 N -0.383 5.383 13 C 0.051 3.949 14 C 0.035 3.965 15 C -0.191 4.191 16 C -0.189 4.189 17 C -0.643 4.643 18 H 0.056 0.944 19 C -0.213 4.213 20 N -0.578 5.578 21 Si 0.927 3.073 22 H -0.204 1.204 23 H -0.204 1.204 24 H -0.209 1.209 25 H 0.267 0.733 26 H 0.112 0.888 27 H 0.090 0.910 28 H 0.086 0.914 29 H 0.105 0.895 30 H 0.118 0.882 31 H 0.081 0.919 32 H 0.095 0.905 33 H 0.098 0.902 34 H 0.243 0.757 35 H 0.056 0.944 36 H 0.053 0.947 37 H 0.070 0.930 38 H 0.065 0.935 39 H 0.047 0.953 40 H 0.049 0.951 41 H 0.066 0.934 42 H 0.068 0.932 43 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -9.119 -16.858 -1.409 19.218 hybrid contribution -0.773 -1.055 0.261 1.333 sum -9.892 -17.913 -1.148 20.495 Atomic orbital electron populations 1.25731 0.96552 0.97851 0.98643 1.23498 0.94860 1.02519 1.02209 1.17791 0.83796 0.87359 0.95451 0.88933 1.21816 1.01501 0.94225 0.97951 1.21494 1.00978 0.99151 0.93441 1.21910 1.00753 0.93125 1.00998 1.21890 1.01678 0.99821 0.78510 1.47339 1.58439 1.21087 1.08629 1.16101 0.78664 0.80536 0.84519 1.90842 1.62757 1.81761 1.16548 1.45353 1.55990 1.21458 1.15481 1.21013 0.91815 0.85999 0.96116 1.18541 0.93503 0.92242 0.92243 1.21875 0.96854 1.00434 0.99979 1.21890 0.99035 0.98954 0.99028 1.22054 1.35178 1.05558 1.01505 0.94439 1.26736 0.97669 1.02178 0.94715 1.70941 1.36476 1.37702 1.12653 0.83083 0.75791 0.73526 0.74851 1.20362 1.20399 1.20922 0.73332 0.88798 0.91037 0.91381 0.89470 0.88209 0.91926 0.90480 0.90200 0.75741 0.94445 0.94731 0.93002 0.93499 0.95304 0.95100 0.93427 0.93217 0.90505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.15 19.25 74.32 1.43 -1.72 16 2 C -0.23 -5.35 11.32 31.13 0.35 -5.00 16 3 C 0.26 6.60 3.06 43.03 0.13 6.73 16 4 H 0.09 2.83 6.99 -2.39 -0.02 2.82 16 5 C -0.12 -2.11 5.50 30.53 0.17 -1.94 16 6 C -0.11 -1.62 5.72 30.62 0.18 -1.44 16 7 C -0.13 -2.04 6.08 30.67 0.19 -1.85 16 8 C 0.10 2.15 6.02 86.36 0.52 2.66 16 9 N -0.62 -17.44 2.66 -823.86 -2.19 -19.63 16 10 C 0.70 26.23 8.29 179.05 1.48 27.71 16 11 O -0.64 -29.16 15.77 -3.99 -0.06 -29.22 16 12 N -0.73 -26.62 4.88 -478.53 -2.34 -28.96 16 13 C 0.17 7.78 4.51 86.38 0.39 8.17 16 14 C 0.04 1.67 0.50 -52.93 -0.03 1.64 16 15 C -0.13 -5.93 7.88 71.98 0.57 -5.36 16 16 C -0.13 -5.72 7.93 71.98 0.57 -5.15 16 17 C -0.60 -32.89 8.01 25.60 0.20 -32.69 16 18 H 0.04 2.09 7.75 -2.91 -0.02 2.07 16 19 C -0.01 -0.71 5.09 84.65 0.43 -0.28 16 20 N -0.94 -52.89 12.20 21.45 0.26 -52.63 16 21 Si 1.10 49.57 29.91 68.60 2.05 51.62 16 22 H -0.28 -11.91 7.11 99.48 0.71 -11.20 16 23 H -0.28 -11.95 7.11 99.48 0.71 -11.25 16 24 H -0.28 -12.69 7.11 99.48 0.71 -11.99 16 25 H 0.25 2.48 7.80 -4.41 -0.03 2.45 16 26 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 27 H 0.07 1.37 8.14 -2.39 -0.02 1.36 16 28 H 0.07 0.97 7.35 -2.39 -0.02 0.95 16 29 H 0.09 0.94 8.14 -2.38 -0.02 0.92 16 30 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 31 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 32 H 0.08 1.46 7.98 -2.39 -0.02 1.44 16 33 H 0.08 1.66 5.75 -2.39 -0.01 1.65 16 34 H 0.40 12.79 3.86 -92.71 -0.36 12.44 16 35 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 36 H 0.03 1.66 8.14 -2.39 -0.02 1.65 16 37 H 0.05 2.53 5.18 -2.39 -0.01 2.52 16 38 H 0.05 1.73 7.03 -2.39 -0.02 1.71 16 39 H 0.03 1.29 8.14 -2.38 -0.02 1.27 16 40 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 41 H 0.05 1.70 7.03 -2.39 -0.02 1.68 16 42 H 0.05 2.40 5.27 -2.39 -0.01 2.39 16 43 H 0.28 15.24 3.51 -92.71 -0.33 14.91 16 Total: -1.00 -68.31 334.70 5.39 -62.92 By element: Atomic # 1 Polarization: 23.33 SS G_CDS: 1.08 Total: 24.41 kcal Atomic # 6 Polarization: -15.10 SS G_CDS: 6.59 Total: -8.51 kcal Atomic # 7 Polarization: -96.96 SS G_CDS: -4.27 Total: -101.23 kcal Atomic # 8 Polarization: -29.16 SS G_CDS: -0.06 Total: -29.22 kcal Atomic # 14 Polarization: 49.57 SS G_CDS: 2.05 Total: 51.62 kcal Total: -68.31 5.39 -62.92 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000895302545.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.325 kcal (2) G-P(sol) polarization free energy of solvation -68.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.921 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds