Wall clock time and date at job start Tue Mar 31 2020 01:06:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50705 * 119.99601 * 2 1 4 4 N 1.46492 * 109.47056 * 124.11899 * 3 2 1 5 5 C 1.46503 * 119.99943 * 95.09136 * 4 3 2 6 6 C 1.50694 * 109.47502 * 276.71190 * 5 4 3 7 7 H 1.08007 * 119.99778 * 0.02562 * 6 5 4 8 8 C 1.37880 * 120.00492 * 179.97438 * 6 5 4 9 9 N 1.31512 * 119.99642 * 0.02562 * 8 6 5 10 10 Si 1.86803 * 120.00126 * 179.97438 * 8 6 5 11 11 H 1.48502 * 109.46971 * 180.02562 * 10 8 6 12 12 H 1.48495 * 109.46633 * 60.00732 * 10 8 6 13 13 H 1.48497 * 109.47026 * 300.00362 * 10 8 6 14 14 C 1.34777 * 120.00311 * 275.09384 * 4 3 2 15 15 O 1.21278 * 119.99967 * 5.17237 * 14 4 3 16 16 C 1.50696 * 120.00027 * 185.17620 * 14 4 3 17 17 C 1.54991 * 113.20591 * 59.81655 * 16 14 4 18 18 C 1.56377 * 103.66296 * 147.03724 * 17 16 14 19 19 N 1.48242 * 106.91514 * 1.07220 * 18 17 16 20 20 C 1.48807 * 105.17593 * 332.47222 * 19 18 17 21 21 C 1.47680 * 108.91826 * 88.12892 * 19 18 17 22 22 C 1.52990 * 109.27748 * 312.92027 * 21 19 18 23 23 C 1.53156 * 110.09262 * 304.78227 * 22 21 19 24 24 H 1.08002 * 119.99669 * 185.03166 * 1 2 3 25 25 H 1.08001 * 120.00115 * 5.02748 * 1 2 3 26 26 H 1.07996 * 120.00249 * 180.02562 * 2 1 3 27 27 H 1.09002 * 109.47446 * 4.11482 * 3 2 1 28 28 H 1.09000 * 109.46797 * 244.11711 * 3 2 1 29 29 H 1.09000 * 109.47103 * 156.71101 * 5 4 3 30 30 H 1.09005 * 109.47042 * 36.71606 * 5 4 3 31 31 H 0.97004 * 120.00323 * 359.97438 * 9 8 6 32 32 H 1.08998 * 110.37857 * 265.29861 * 17 16 14 33 33 H 1.09004 * 110.38045 * 27.65418 * 17 16 14 34 34 H 1.08995 * 109.94673 * 241.67696 * 18 17 16 35 35 H 1.09002 * 109.91478 * 120.44826 * 18 17 16 36 36 H 1.08992 * 111.68684 * 284.22323 * 20 19 18 37 37 H 1.08998 * 110.17812 * 160.55681 * 20 19 18 38 38 H 1.08993 * 109.50162 * 192.97651 * 21 19 18 39 39 H 1.08997 * 109.50064 * 72.85810 * 21 19 18 40 40 H 1.09001 * 109.36745 * 184.59642 * 22 21 19 41 41 H 1.09000 * 109.37256 * 64.98012 * 22 21 19 42 42 H 1.08998 * 109.63285 * 294.29450 * 23 22 21 43 43 H 1.09004 * 109.78915 * 173.80003 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 2.9785 1.3408 1.1434 5 6 4.3770 0.9380 0.9752 6 6 4.4833 -0.5619 1.0745 7 1 3.5975 -1.1559 1.2453 8 6 5.7110 -1.1762 0.9462 9 7 6.7894 -0.4530 0.7376 10 14 5.8427 -3.0355 1.0699 11 1 7.2602 -3.4437 0.8993 12 1 5.0154 -3.6620 0.0078 13 1 5.3572 -3.4785 2.4015 14 6 2.5339 1.7440 2.3501 15 8 1.3570 1.9875 2.5124 16 6 3.4992 1.8924 3.4978 17 6 4.6267 2.9186 3.2186 18 6 4.9169 3.5400 4.6240 19 7 4.0174 2.8634 5.5888 20 6 2.8351 2.4419 4.7895 21 6 4.6857 1.6476 6.0949 22 6 5.2734 0.8671 4.9176 23 6 4.1807 0.5673 3.8871 24 1 -0.5400 -0.9318 0.0820 25 1 -0.5400 0.9317 -0.0820 26 1 1.8501 -0.9353 -0.0004 27 1 1.3574 2.1324 0.0737 28 1 2.6336 1.3955 -0.9246 29 1 4.9838 1.3976 1.7554 30 1 4.7339 1.2637 -0.0019 31 1 6.7211 0.5125 0.6737 32 1 5.5134 2.4134 2.8356 33 1 4.2851 3.6752 2.5123 34 1 4.7092 4.6098 4.6076 35 1 5.9572 3.3664 4.8991 36 1 2.1810 3.2839 4.5632 37 1 2.2893 1.6559 5.3114 38 1 3.9604 1.0250 6.6186 39 1 5.4853 1.9302 6.7796 40 1 5.6954 -0.0703 5.2800 41 1 6.0602 1.4580 4.4487 42 1 3.4445 -0.1097 4.3204 43 1 4.6233 0.1094 3.0025 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000897823607.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:06:59 Heat of formation + Delta-G solvation = 1.651563 kcal Electronic energy + Delta-G solvation = -23832.341064 eV Core-core repulsion = 20685.201523 eV Total energy + Delta-G solvation = -3147.139541 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.99518 -38.49838 -35.63243 -33.86733 -32.43597 -31.66762 -31.41775 -28.87166 -27.15320 -25.92333 -24.13910 -23.24729 -22.47444 -20.94300 -19.78311 -19.31956 -18.36489 -17.16442 -16.27368 -15.84815 -15.65415 -14.91177 -14.48997 -14.02058 -13.90112 -13.63982 -13.38264 -13.00529 -12.81422 -12.54697 -12.41449 -12.25169 -12.14774 -11.94842 -11.53454 -11.30294 -11.12363 -10.96730 -10.81681 -10.66493 -10.63415 -10.40208 -10.24056 -10.07809 -9.78379 -9.29334 -9.20879 -8.81210 -8.58844 -8.22542 -7.77238 -6.60135 -4.34383 2.66358 3.26685 3.30245 3.32956 3.49684 3.90213 4.23975 4.33744 4.83500 4.98411 5.09603 5.17243 5.30667 5.36909 5.38457 5.45312 5.51496 5.61457 5.70498 5.78910 5.85284 5.87180 5.97470 6.07775 6.09249 6.15894 6.19318 6.25081 6.33640 6.36526 6.48391 6.51913 6.70435 6.79874 6.95595 7.07730 7.11180 7.19806 7.24965 7.37147 7.78051 8.06117 8.34581 8.56705 8.88722 9.32302 10.74589 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.013065 B = 0.009240 C = 0.006345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2142.629271 B = 3029.580907 C = 4412.004640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.149 4.149 3 C 0.151 3.849 4 N -0.586 5.586 5 C 0.210 3.790 6 C -0.609 4.609 7 H 0.058 0.942 8 C 0.027 3.973 9 N -0.900 5.900 10 Si 1.062 2.938 11 H -0.281 1.281 12 H -0.287 1.287 13 H -0.286 1.286 14 C 0.540 3.460 15 O -0.565 6.565 16 C -0.105 4.105 17 C -0.135 4.135 18 C 0.031 3.969 19 N -0.497 5.497 20 C 0.058 3.942 21 C 0.032 3.968 22 C -0.149 4.149 23 C -0.140 4.140 24 H 0.090 0.910 25 H 0.090 0.910 26 H 0.115 0.885 27 H 0.070 0.930 28 H 0.078 0.922 29 H 0.051 0.949 30 H 0.019 0.981 31 H 0.269 0.731 32 H 0.088 0.912 33 H 0.065 0.935 34 H 0.076 0.924 35 H 0.072 0.928 36 H 0.085 0.915 37 H 0.077 0.923 38 H 0.071 0.929 39 H 0.072 0.928 40 H 0.066 0.934 41 H 0.068 0.932 42 H 0.053 0.947 43 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.015 4.077 4.338 6.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.168 4.168 3 C 0.028 3.972 4 N -0.315 5.315 5 C 0.090 3.910 6 C -0.648 4.648 7 H 0.076 0.924 8 C -0.179 4.179 9 N -0.534 5.534 10 Si 0.889 3.111 11 H -0.206 1.206 12 H -0.213 1.213 13 H -0.212 1.212 14 C 0.327 3.673 15 O -0.445 6.445 16 C -0.109 4.109 17 C -0.174 4.174 18 C -0.098 4.098 19 N -0.218 5.218 20 C -0.071 4.071 21 C -0.097 4.097 22 C -0.188 4.188 23 C -0.177 4.177 24 H 0.109 0.891 25 H 0.109 0.891 26 H 0.133 0.867 27 H 0.088 0.912 28 H 0.096 0.904 29 H 0.069 0.931 30 H 0.037 0.963 31 H 0.079 0.921 32 H 0.106 0.894 33 H 0.084 0.916 34 H 0.094 0.906 35 H 0.091 0.909 36 H 0.103 0.897 37 H 0.095 0.905 38 H 0.090 0.910 39 H 0.091 0.909 40 H 0.085 0.915 41 H 0.086 0.914 42 H 0.071 0.929 43 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -2.649 3.336 4.868 6.469 hybrid contribution -0.816 0.429 -0.776 1.205 sum -3.465 3.765 4.092 6.552 Atomic orbital electron populations 1.23665 0.95895 1.01064 1.02621 1.23430 0.95839 0.99690 0.97844 1.20325 0.92448 0.95094 0.89327 1.47950 1.12448 1.63271 1.07843 1.19996 0.76933 0.96513 0.97596 1.22256 0.96540 0.91531 1.54452 0.92389 1.25753 0.91852 1.06887 0.93411 1.70842 1.30276 1.07972 1.44356 0.83616 0.76332 0.74266 0.76838 1.20581 1.21299 1.21187 1.19918 0.87966 0.76149 0.83271 1.90593 1.17580 1.52878 1.83414 1.22384 0.95402 0.98625 0.94539 1.23440 0.98490 0.97550 0.97891 1.23468 0.97289 0.99034 0.90018 1.66455 1.05671 1.20220 1.29424 1.23314 0.93150 1.00088 0.90559 1.22628 0.98694 0.91403 0.96972 1.22188 0.99105 1.00819 0.96652 1.22555 0.97593 0.94569 1.02999 0.89114 0.89123 0.86684 0.91216 0.90350 0.93136 0.96301 0.92103 0.89358 0.91588 0.90559 0.90923 0.89650 0.90484 0.91046 0.90942 0.91530 0.91374 0.92854 0.84277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.20 14.31 29.01 0.42 -2.78 16 2 C -0.15 -2.75 9.73 -36.02 -0.35 -3.10 16 3 C 0.15 2.83 5.79 -5.20 -0.03 2.80 16 4 N -0.59 -12.07 2.46 -176.44 -0.43 -12.50 16 5 C 0.21 4.62 3.84 -5.20 -0.02 4.60 16 6 C -0.61 -14.77 6.88 -34.44 -0.24 -15.01 16 7 H 0.06 1.47 6.86 -52.48 -0.36 1.11 16 8 C 0.03 0.68 5.42 -17.82 -0.10 0.58 16 9 N -0.90 -23.86 13.65 55.43 0.76 -23.10 16 10 Si 1.06 23.05 29.90 -169.99 -5.08 17.96 16 11 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 12 H -0.29 -6.06 7.11 56.52 0.40 -5.66 16 13 H -0.29 -6.00 7.11 56.52 0.40 -5.60 16 14 C 0.54 11.22 6.70 -10.99 -0.07 11.15 16 15 O -0.56 -12.80 15.90 5.56 0.09 -12.71 16 16 C -0.10 -1.91 0.68 -152.87 -0.10 -2.01 16 17 C -0.13 -2.21 4.58 -23.86 -0.11 -2.32 16 18 C 0.03 0.44 6.25 -1.27 -0.01 0.43 16 19 N -0.50 -7.54 6.07 -227.44 -1.38 -8.92 16 20 C 0.06 0.97 5.48 -1.55 -0.01 0.96 16 21 C 0.03 0.45 5.84 -3.40 -0.02 0.43 16 22 C -0.15 -2.39 5.52 -26.66 -0.15 -2.53 16 23 C -0.14 -2.64 4.65 -26.12 -0.12 -2.76 16 24 H 0.09 1.34 8.06 -52.49 -0.42 0.92 16 25 H 0.09 1.41 7.85 -52.49 -0.41 1.00 16 26 H 0.12 2.29 7.15 -52.49 -0.38 1.91 16 27 H 0.07 1.27 7.32 -51.93 -0.38 0.89 16 28 H 0.08 1.38 7.91 -51.93 -0.41 0.97 16 29 H 0.05 1.10 2.80 -51.93 -0.15 0.96 16 30 H 0.02 0.44 7.84 -51.93 -0.41 0.03 16 31 H 0.27 7.01 7.22 -40.82 -0.29 6.71 16 32 H 0.09 1.54 5.12 -51.93 -0.27 1.28 16 33 H 0.07 1.07 8.00 -51.93 -0.42 0.66 16 34 H 0.08 1.01 8.14 -51.93 -0.42 0.58 16 35 H 0.07 0.97 6.94 -51.93 -0.36 0.61 16 36 H 0.09 1.49 7.95 -51.93 -0.41 1.07 16 37 H 0.08 1.31 7.63 -51.93 -0.40 0.91 16 38 H 0.07 0.99 7.84 -51.93 -0.41 0.58 16 39 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 40 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 41 H 0.07 1.11 5.38 -51.93 -0.28 0.83 16 42 H 0.05 1.02 8.06 -51.93 -0.42 0.61 16 43 H 0.14 3.05 3.23 -51.93 -0.17 2.88 16 LS Contribution 322.54 15.07 4.86 4.86 Total: -1.00 -26.91 322.54 -8.50 -35.41 By element: Atomic # 1 Polarization: 14.97 SS G_CDS: -6.39 Total: 8.58 kcal Atomic # 6 Polarization: -8.66 SS G_CDS: -0.91 Total: -9.57 kcal Atomic # 7 Polarization: -43.47 SS G_CDS: -1.06 Total: -44.53 kcal Atomic # 8 Polarization: -12.80 SS G_CDS: 0.09 Total: -12.71 kcal Atomic # 14 Polarization: 23.05 SS G_CDS: -5.08 Total: 17.96 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -26.91 -8.50 -35.41 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000897823607.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.058 kcal (2) G-P(sol) polarization free energy of solvation -26.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.407 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds