Wall clock time and date at job start Tue Mar 31 2020 00:59:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 N 1.46501 * 109.47065 * 16.57499 * 3 2 1 5 5 C 1.37104 * 119.99994 * 273.43267 * 4 3 2 6 6 H 1.08003 * 119.99611 * 144.69978 * 5 4 3 7 7 C 1.38942 * 119.99899 * 324.70019 * 5 4 3 8 8 N 1.31411 * 120.00624 * 332.13296 * 7 5 4 9 9 Si 1.86804 * 119.99947 * 152.13532 * 7 5 4 10 10 H 1.48503 * 109.47164 * 59.99371 * 9 7 5 11 11 H 1.48507 * 109.46738 * 300.00084 * 9 7 5 12 12 H 1.48496 * 109.47483 * 179.97438 * 9 7 5 13 13 C 1.34780 * 119.99864 * 93.43732 * 4 3 2 14 14 O 1.21296 * 119.99750 * 186.47468 * 13 4 3 15 15 C 1.50693 * 120.00004 * 6.46778 * 13 4 3 16 16 H 1.08998 * 109.50268 * 40.07054 * 15 13 4 17 17 C 1.53122 * 109.50749 * 279.99014 * 15 13 4 18 18 C 1.53114 * 109.16215 * 182.40586 * 17 15 13 19 19 C 1.53040 * 109.28009 * 57.65226 * 18 17 15 20 20 N 1.46842 * 109.52345 * 300.82231 * 19 18 17 21 21 C 1.46904 * 111.00055 * 185.83747 * 20 19 18 22 22 C 1.53001 * 109.46719 * 66.04600 * 21 20 19 23 23 C 1.53006 * 109.46985 * 180.02562 * 22 21 20 24 24 C 1.46853 * 111.20161 * 61.73972 * 20 19 18 25 25 H 4.40640 * 5.51380 * 180.02562 * 4 1 2 26 26 H 1.09005 * 109.47028 * 256.57652 * 3 2 1 27 27 H 1.08999 * 109.47220 * 136.57702 * 3 2 1 28 28 H 0.96997 * 119.99541 * 354.20903 * 8 7 5 29 29 H 1.08995 * 109.51765 * 302.31419 * 17 15 13 30 30 H 1.08996 * 109.52025 * 62.43231 * 17 15 13 31 31 H 1.09002 * 109.50315 * 177.59471 * 18 17 15 32 32 H 1.09003 * 109.50112 * 297.71067 * 18 17 15 33 33 H 1.09002 * 109.45892 * 60.83334 * 19 18 17 34 34 H 1.09002 * 109.46232 * 180.81202 * 19 18 17 35 35 H 1.08998 * 109.47236 * 186.04385 * 21 20 19 36 36 H 1.08999 * 109.47019 * 306.04774 * 21 20 19 37 37 H 1.08998 * 109.47091 * 299.99874 * 22 21 20 38 38 H 1.08999 * 109.47233 * 60.00305 * 22 21 20 39 39 H 1.09006 * 109.46970 * 59.99611 * 23 22 21 40 40 H 1.08990 * 109.47111 * 179.97438 * 23 22 21 41 41 H 1.09002 * 109.47008 * 300.00316 * 23 22 21 42 42 H 1.08991 * 109.45951 * 178.23966 * 24 20 19 43 43 H 1.09003 * 109.45831 * 58.27456 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1349 -1.3230 -0.3940 5 6 3.2968 -2.3032 0.5508 6 1 3.0941 -3.3339 0.2998 7 6 3.7217 -1.9705 1.8312 8 7 4.4690 -0.9062 2.0198 9 14 3.2305 -3.0363 3.2846 10 1 3.7437 -4.4152 3.0832 11 1 1.7500 -3.0705 3.3954 12 1 3.8077 -2.4709 4.5305 13 6 3.4256 -1.5770 -1.6853 14 8 3.7172 -2.7025 -2.0312 15 6 3.3882 -0.4629 -2.6994 16 1 3.8100 0.4418 -2.2616 17 6 1.9388 -0.2008 -3.1178 18 6 1.9152 0.8904 -4.1916 19 6 2.7743 0.4496 -5.3790 20 7 4.1512 0.2121 -4.9271 21 6 5.0355 -0.0785 -6.0636 22 6 5.1521 1.1634 -6.9496 23 6 6.0727 0.8605 -8.1336 24 6 4.2046 -0.8646 -3.9299 25 1 -1.0498 -0.0003 -0.0003 26 1 3.0092 0.2394 0.9996 27 1 3.0090 0.7472 -0.7064 28 1 4.7938 -0.4006 1.2584 29 1 1.5044 -1.1163 -3.5191 30 1 1.3633 0.1264 -2.2519 31 1 0.8898 1.0515 -4.5243 32 1 2.3140 1.8167 -3.7780 33 1 2.3669 -0.4693 -5.8006 34 1 2.7713 1.2306 -6.1393 35 1 6.0229 -0.3553 -5.6942 36 1 4.6210 -0.9020 -6.6451 37 1 4.1647 1.4402 -7.3190 38 1 5.5666 1.9869 -6.3681 39 1 5.6578 0.0370 -8.7150 40 1 6.1554 1.7451 -8.7650 41 1 7.0601 0.5834 -7.7645 42 1 5.2403 -1.0380 -3.6380 43 1 3.7905 -1.7773 -4.3584 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000907979387.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:59:40 Heat of formation + Delta-G solvation = 17.309753 kcal Electronic energy + Delta-G solvation = -22476.972230 eV Core-core repulsion = 19330.511679 eV Total energy + Delta-G solvation = -3146.460551 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.73527 -38.04403 -35.42495 -34.81687 -32.69790 -31.80119 -31.25935 -30.55028 -26.69971 -26.26861 -24.92518 -23.31875 -22.73718 -21.13363 -19.95784 -18.92710 -18.11750 -17.07160 -16.30058 -15.82615 -15.43117 -14.75911 -14.58314 -14.40146 -13.94761 -13.86473 -13.65041 -13.54644 -13.06198 -12.84875 -12.55309 -12.43185 -12.13853 -11.85084 -11.68394 -11.53177 -11.15298 -11.12157 -10.92830 -10.87160 -10.52433 -10.35227 -10.23669 -10.17404 -10.12144 -9.71868 -9.46850 -8.94149 -8.42401 -8.17788 -7.84013 -6.64263 -4.00963 3.25128 3.31094 3.37567 3.42558 3.56508 3.73738 3.92805 4.28359 4.72833 4.80563 4.91678 4.93948 5.00520 5.10351 5.15604 5.21705 5.31751 5.41645 5.45554 5.57447 5.59216 5.65652 5.69810 5.75764 5.88650 5.90810 5.94408 6.03004 6.09044 6.12297 6.17166 6.21135 6.25887 6.45544 6.49173 6.52938 6.61741 7.21463 7.21843 7.88607 8.08599 8.19456 8.59434 8.86706 9.33960 9.80077 10.59573 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.025412 B = 0.004577 C = 0.004158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1101.584100 B = 6116.651479 C = 6732.032032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.160 4.160 3 C 0.186 3.814 4 N -0.448 5.448 5 C -0.399 4.399 6 H 0.085 0.915 7 C 0.011 3.989 8 N -0.873 5.873 9 Si 1.070 2.930 10 H -0.283 1.283 11 H -0.284 1.284 12 H -0.279 1.279 13 C 0.471 3.529 14 O -0.570 6.570 15 C -0.099 4.099 16 H 0.089 0.911 17 C -0.117 4.117 18 C -0.113 4.113 19 C 0.053 3.947 20 N -0.541 5.541 21 C 0.056 3.944 22 C -0.121 4.121 23 C -0.151 4.151 24 C 0.081 3.919 25 H 0.210 0.790 26 H 0.116 0.884 27 H 0.084 0.916 28 H 0.274 0.726 29 H 0.059 0.941 30 H 0.076 0.924 31 H 0.065 0.935 32 H 0.071 0.929 33 H 0.030 0.970 34 H 0.074 0.926 35 H 0.074 0.926 36 H 0.031 0.969 37 H 0.060 0.940 38 H 0.070 0.930 39 H 0.051 0.949 40 H 0.054 0.946 41 H 0.055 0.945 42 H 0.075 0.925 43 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.827 7.236 -13.006 15.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.255 4.255 2 C -0.162 4.162 3 C 0.062 3.938 4 N -0.168 5.168 5 C -0.526 4.526 6 H 0.103 0.897 7 C -0.195 4.195 8 N -0.507 5.507 9 Si 0.896 3.104 10 H -0.209 1.209 11 H -0.211 1.211 12 H -0.204 1.204 13 C 0.260 3.740 14 O -0.453 6.453 15 C -0.121 4.121 16 H 0.108 0.892 17 C -0.155 4.155 18 C -0.151 4.151 19 C -0.075 4.075 20 N -0.265 5.265 21 C -0.072 4.072 22 C -0.158 4.158 23 C -0.209 4.209 24 C -0.047 4.047 25 H 0.227 0.773 26 H 0.133 0.867 27 H 0.102 0.898 28 H 0.085 0.915 29 H 0.078 0.922 30 H 0.095 0.905 31 H 0.083 0.917 32 H 0.089 0.911 33 H 0.048 0.952 34 H 0.092 0.908 35 H 0.092 0.908 36 H 0.049 0.951 37 H 0.079 0.921 38 H 0.089 0.911 39 H 0.070 0.930 40 H 0.073 0.927 41 H 0.074 0.926 42 H 0.094 0.906 43 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -2.371 6.954 -11.282 13.463 hybrid contribution -0.661 -0.594 -2.001 2.190 sum -3.032 6.360 -13.283 15.036 Atomic orbital electron populations 1.24648 0.95634 1.01606 1.03578 1.23899 0.95074 0.99085 0.98096 1.18748 0.83310 0.87488 1.04217 1.43462 1.56189 1.10956 1.06170 1.20221 1.48997 0.90506 0.92867 0.89741 1.26345 0.93346 0.99613 1.00223 1.70791 1.25823 1.18693 1.35438 0.83495 0.76610 0.75278 0.75061 1.20867 1.21060 1.20409 1.20284 0.80630 0.89456 0.83664 1.90519 1.51814 1.23675 1.79247 1.21252 0.96705 0.98924 0.95241 0.89249 1.21669 0.95569 0.98876 0.99358 1.21570 0.98813 0.99138 0.95531 1.22140 0.88410 0.99716 0.97196 1.61912 1.08138 1.43745 1.12708 1.22116 0.97368 0.96443 0.91313 1.21546 0.99867 0.98322 0.96101 1.21741 0.99822 1.01330 0.97996 1.21764 1.00421 0.91413 0.91097 0.77273 0.86702 0.89777 0.91502 0.92205 0.90517 0.91654 0.91075 0.95188 0.90808 0.90772 0.95113 0.92117 0.91123 0.92976 0.92698 0.92627 0.90609 0.93910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.24 -4.18 19.04 29.55 0.56 -3.62 16 2 C -0.16 -3.26 11.42 -37.12 -0.42 -3.69 16 3 C 0.19 4.03 4.71 -6.83 -0.03 4.00 16 4 N -0.45 -11.32 2.29 -117.93 -0.27 -11.59 16 5 C -0.40 -11.25 8.86 -14.93 -0.13 -11.38 16 6 H 0.08 2.56 7.72 -52.48 -0.41 2.15 16 7 C 0.01 0.31 4.83 -17.47 -0.08 0.22 16 8 N -0.87 -23.96 12.19 55.50 0.68 -23.29 16 9 Si 1.07 24.09 30.00 -169.99 -5.10 18.99 16 10 H -0.28 -6.21 7.11 56.52 0.40 -5.80 16 11 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 12 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 13 C 0.47 11.50 6.79 -10.99 -0.07 11.43 16 14 O -0.57 -15.98 15.84 5.54 0.09 -15.90 16 15 C -0.10 -1.87 1.85 -91.69 -0.17 -2.04 16 16 H 0.09 1.63 6.55 -51.93 -0.34 1.29 16 17 C -0.12 -1.94 5.12 -26.61 -0.14 -2.08 16 18 C -0.11 -1.48 6.09 -26.65 -0.16 -1.64 16 19 C 0.05 0.68 5.29 -3.83 -0.02 0.66 16 20 N -0.54 -7.75 4.65 -234.66 -1.09 -8.84 16 21 C 0.06 0.68 4.96 -3.82 -0.02 0.66 16 22 C -0.12 -1.20 5.87 -26.73 -0.16 -1.36 16 23 C -0.15 -1.27 9.91 37.16 0.37 -0.90 16 24 C 0.08 1.42 4.23 -3.83 -0.02 1.40 16 25 H 0.21 2.78 7.80 -54.10 -0.42 2.36 16 26 H 0.12 2.71 5.39 -51.93 -0.28 2.43 16 27 H 0.08 1.58 5.73 -51.93 -0.30 1.29 16 28 H 0.27 7.48 7.25 -40.82 -0.30 7.19 16 29 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 30 H 0.08 1.32 4.84 -51.93 -0.25 1.07 16 31 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.07 0.81 6.22 -51.93 -0.32 0.49 16 35 H 0.07 0.92 7.98 -51.93 -0.41 0.50 16 36 H 0.03 0.38 8.12 -51.93 -0.42 -0.04 16 37 H 0.06 0.58 6.44 -51.93 -0.33 0.25 16 38 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 39 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 41 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.08 1.39 8.01 -51.93 -0.42 0.98 16 43 H 0.04 0.82 7.87 -51.93 -0.41 0.41 16 LS Contribution 340.33 15.07 5.13 5.13 Total: -1.00 -31.26 340.33 -7.85 -39.11 By element: Atomic # 1 Polarization: 11.49 SS G_CDS: -6.79 Total: 4.70 kcal Atomic # 6 Polarization: -7.82 SS G_CDS: -0.50 Total: -8.32 kcal Atomic # 7 Polarization: -43.04 SS G_CDS: -0.69 Total: -43.72 kcal Atomic # 8 Polarization: -15.98 SS G_CDS: 0.09 Total: -15.90 kcal Atomic # 14 Polarization: 24.09 SS G_CDS: -5.10 Total: 18.99 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -31.26 -7.85 -39.11 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000907979387.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.422 kcal (2) G-P(sol) polarization free energy of solvation -31.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.112 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds