Wall clock time and date at job start Tue Mar 31 2020 00:59:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 N 1.46501 * 109.47065 * 16.57499 * 3 2 1 5 5 C 1.37104 * 119.99994 * 273.43267 * 4 3 2 6 6 H 1.08003 * 119.99611 * 144.69978 * 5 4 3 7 7 C 1.38942 * 119.99899 * 324.70019 * 5 4 3 8 8 N 1.31411 * 120.00624 * 332.13296 * 7 5 4 9 9 Si 1.86804 * 119.99947 * 152.13532 * 7 5 4 10 10 H 1.48503 * 109.47164 * 59.99371 * 9 7 5 11 11 H 1.48507 * 109.46738 * 300.00084 * 9 7 5 12 12 H 1.48496 * 109.47483 * 179.97438 * 9 7 5 13 13 C 1.34780 * 119.99864 * 93.43732 * 4 3 2 14 14 O 1.21296 * 119.99750 * 186.47468 * 13 4 3 15 15 C 1.50693 * 120.00004 * 6.46778 * 13 4 3 16 16 H 1.08998 * 109.50268 * 40.07054 * 15 13 4 17 17 C 1.53122 * 109.50749 * 279.99014 * 15 13 4 18 18 C 1.53114 * 109.16215 * 182.40586 * 17 15 13 19 19 C 1.53040 * 109.28009 * 57.65226 * 18 17 15 20 20 N 1.46842 * 109.52345 * 300.82231 * 19 18 17 21 21 C 1.46904 * 111.00055 * 185.83747 * 20 19 18 22 22 C 1.53001 * 109.46719 * 66.04600 * 21 20 19 23 23 C 1.53006 * 109.46985 * 180.02562 * 22 21 20 24 24 C 1.46853 * 111.20161 * 61.73972 * 20 19 18 25 25 H 4.40640 * 5.51380 * 180.02562 * 4 1 2 26 26 H 1.09005 * 109.47028 * 256.57652 * 3 2 1 27 27 H 1.08999 * 109.47220 * 136.57702 * 3 2 1 28 28 H 0.96997 * 119.99541 * 354.20903 * 8 7 5 29 29 H 1.08995 * 109.51765 * 302.31419 * 17 15 13 30 30 H 1.08996 * 109.52025 * 62.43231 * 17 15 13 31 31 H 1.09002 * 109.50315 * 177.59471 * 18 17 15 32 32 H 1.09003 * 109.50112 * 297.71067 * 18 17 15 33 33 H 1.09002 * 109.45892 * 60.83334 * 19 18 17 34 34 H 1.09002 * 109.46232 * 180.81202 * 19 18 17 35 35 H 1.08998 * 109.47236 * 186.04385 * 21 20 19 36 36 H 1.08999 * 109.47019 * 306.04774 * 21 20 19 37 37 H 1.08998 * 109.47091 * 299.99874 * 22 21 20 38 38 H 1.08999 * 109.47233 * 60.00305 * 22 21 20 39 39 H 1.09006 * 109.46970 * 59.99611 * 23 22 21 40 40 H 1.08990 * 109.47111 * 179.97438 * 23 22 21 41 41 H 1.09002 * 109.47008 * 300.00316 * 23 22 21 42 42 H 1.08991 * 109.45951 * 178.23966 * 24 20 19 43 43 H 1.09003 * 109.45831 * 58.27456 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1349 -1.3230 -0.3940 5 6 3.2968 -2.3032 0.5508 6 1 3.0941 -3.3339 0.2998 7 6 3.7217 -1.9705 1.8312 8 7 4.4690 -0.9062 2.0198 9 14 3.2305 -3.0363 3.2846 10 1 3.7437 -4.4152 3.0832 11 1 1.7500 -3.0705 3.3954 12 1 3.8077 -2.4709 4.5305 13 6 3.4256 -1.5770 -1.6853 14 8 3.7172 -2.7025 -2.0312 15 6 3.3882 -0.4629 -2.6994 16 1 3.8100 0.4418 -2.2616 17 6 1.9388 -0.2008 -3.1178 18 6 1.9152 0.8904 -4.1916 19 6 2.7743 0.4496 -5.3790 20 7 4.1512 0.2121 -4.9271 21 6 5.0355 -0.0785 -6.0636 22 6 5.1521 1.1634 -6.9496 23 6 6.0727 0.8605 -8.1336 24 6 4.2046 -0.8646 -3.9299 25 1 -1.0498 -0.0003 -0.0003 26 1 3.0092 0.2394 0.9996 27 1 3.0090 0.7472 -0.7064 28 1 4.7938 -0.4006 1.2584 29 1 1.5044 -1.1163 -3.5191 30 1 1.3633 0.1264 -2.2519 31 1 0.8898 1.0515 -4.5243 32 1 2.3140 1.8167 -3.7780 33 1 2.3669 -0.4693 -5.8006 34 1 2.7713 1.2306 -6.1393 35 1 6.0229 -0.3553 -5.6942 36 1 4.6210 -0.9020 -6.6451 37 1 4.1647 1.4402 -7.3190 38 1 5.5666 1.9869 -6.3681 39 1 5.6578 0.0370 -8.7150 40 1 6.1554 1.7451 -8.7650 41 1 7.0601 0.5834 -7.7645 42 1 5.2403 -1.0380 -3.6380 43 1 3.7905 -1.7773 -4.3584 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000907979387.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:59:39 Heat of formation + Delta-G solvation = -1.900438 kcal Electronic energy + Delta-G solvation = -22477.805247 eV Core-core repulsion = 19330.511679 eV Total energy + Delta-G solvation = -3147.293567 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -41.36375 -39.51005 -37.35253 -35.96882 -34.39322 -33.14274 -32.78612 -31.96975 -28.47967 -27.30921 -26.69588 -24.75237 -23.98860 -22.26537 -21.24238 -20.54410 -19.94116 -18.76525 -17.99544 -17.22697 -16.54417 -16.39122 -16.27593 -15.62818 -15.54025 -15.24437 -14.99289 -14.88782 -14.54828 -14.26152 -14.05853 -13.77362 -13.55180 -13.43172 -12.85687 -12.75127 -12.59496 -12.43816 -12.12459 -12.09608 -11.97686 -11.95413 -11.70059 -11.49954 -11.42569 -11.28879 -11.09321 -10.80368 -10.35906 -9.88874 -9.37605 -8.80461 -6.18454 1.47467 1.51057 1.67220 1.79660 1.92131 1.92644 2.39777 2.69155 2.89555 3.17423 3.59411 3.66825 3.74780 3.83402 4.00142 4.08325 4.12951 4.20348 4.28200 4.39326 4.47545 4.53300 4.55874 4.64042 4.69114 4.72588 4.76502 4.86251 4.93365 4.95309 5.02094 5.10981 5.14019 5.21930 5.29238 5.33887 5.42864 5.75823 5.86330 5.99494 6.12685 6.55076 6.72199 6.82768 7.29543 7.80626 8.42871 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.025412 B = 0.004577 C = 0.004158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1101.584100 B = 6116.651479 C = 6732.032032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.223 4.223 3 C 0.194 3.806 4 N -0.459 5.459 5 C -0.429 4.429 6 H 0.050 0.950 7 C -0.017 4.017 8 N -0.880 5.880 9 Si 1.114 2.886 10 H -0.277 1.277 11 H -0.271 1.271 12 H -0.270 1.270 13 C 0.459 3.541 14 O -0.620 6.620 15 C -0.087 4.087 16 H 0.098 0.902 17 C -0.110 4.110 18 C -0.104 4.104 19 C 0.051 3.949 20 N -0.539 5.539 21 C 0.052 3.948 22 C -0.112 4.112 23 C -0.149 4.149 24 C 0.091 3.909 25 H 0.256 0.744 26 H 0.093 0.907 27 H 0.107 0.893 28 H 0.266 0.734 29 H 0.042 0.958 30 H 0.074 0.926 31 H 0.093 0.907 32 H 0.080 0.920 33 H 0.024 0.976 34 H 0.104 0.896 35 H 0.066 0.934 36 H 0.030 0.970 37 H 0.070 0.930 38 H 0.068 0.932 39 H 0.054 0.946 40 H 0.068 0.932 41 H 0.052 0.948 42 H 0.058 0.942 43 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.544 9.206 -13.892 17.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.224 4.224 3 C 0.072 3.928 4 N -0.178 5.178 5 C -0.556 4.556 6 H 0.068 0.932 7 C -0.220 4.220 8 N -0.514 5.514 9 Si 0.935 3.065 10 H -0.202 1.202 11 H -0.196 1.196 12 H -0.194 1.194 13 C 0.249 3.751 14 O -0.506 6.506 15 C -0.109 4.109 16 H 0.116 0.884 17 C -0.149 4.149 18 C -0.142 4.142 19 C -0.077 4.077 20 N -0.264 5.264 21 C -0.075 4.075 22 C -0.150 4.150 23 C -0.207 4.207 24 C -0.037 4.037 25 H 0.272 0.728 26 H 0.111 0.889 27 H 0.124 0.876 28 H 0.076 0.924 29 H 0.061 0.939 30 H 0.092 0.908 31 H 0.112 0.888 32 H 0.098 0.902 33 H 0.043 0.957 34 H 0.122 0.878 35 H 0.085 0.915 36 H 0.048 0.952 37 H 0.089 0.911 38 H 0.086 0.914 39 H 0.073 0.927 40 H 0.087 0.913 41 H 0.072 0.928 42 H 0.077 0.923 43 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges -4.093 8.971 -12.182 15.673 hybrid contribution -0.158 -1.207 -1.761 2.141 sum -4.251 7.764 -13.943 16.516 Atomic orbital electron populations 1.25646 0.96417 0.98207 1.00230 1.23797 0.95328 1.02142 1.01135 1.18631 0.84899 0.85919 1.03386 1.43664 1.56305 1.11728 1.06084 1.20134 1.50876 0.90124 0.94477 0.93169 1.27618 0.92325 1.00035 1.02062 1.70878 1.26393 1.19115 1.34983 0.82941 0.77116 0.74062 0.72427 1.20235 1.19606 1.19404 1.21275 0.79198 0.90214 0.84407 1.90470 1.53860 1.26071 1.80201 1.21166 0.99001 0.96621 0.94078 0.88391 1.21635 0.93194 0.99552 1.00472 1.21570 1.00680 0.97712 0.94213 1.22277 0.87169 1.00445 0.97786 1.61961 1.09649 1.41677 1.13067 1.22233 0.96511 0.97910 0.90893 1.21491 1.00819 0.96690 0.95989 1.21726 0.99306 1.02101 0.97522 1.21529 0.98853 0.91738 0.91624 0.72812 0.88934 0.87564 0.92396 0.93903 0.90796 0.88849 0.90164 0.95720 0.87823 0.91534 0.95202 0.91102 0.91367 0.92736 0.91265 0.92848 0.92344 0.96194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -6.07 19.04 74.32 1.41 -4.65 16 2 C -0.22 -8.87 11.42 31.12 0.36 -8.52 16 3 C 0.19 8.57 4.71 84.57 0.40 8.96 16 4 N -0.46 -24.11 2.29 -645.41 -1.48 -25.59 16 5 C -0.43 -25.27 8.86 84.04 0.74 -24.52 16 6 H 0.05 3.24 7.72 -2.91 -0.02 3.21 16 7 C -0.02 -0.93 4.83 84.92 0.41 -0.52 16 8 N -0.88 -49.24 12.19 21.66 0.26 -48.97 16 9 Si 1.11 48.93 30.00 68.60 2.06 50.99 16 10 H -0.28 -11.81 7.11 99.48 0.71 -11.10 16 11 H -0.27 -11.23 7.11 99.48 0.71 -10.53 16 12 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 13 C 0.46 23.48 6.79 87.65 0.60 24.08 16 14 O -0.62 -37.00 15.84 -3.08 -0.05 -37.05 16 15 C -0.09 -3.34 1.85 -11.49 -0.02 -3.36 16 16 H 0.10 3.57 6.55 -2.39 -0.02 3.56 16 17 C -0.11 -3.58 5.12 30.67 0.16 -3.42 16 18 C -0.10 -2.43 6.09 30.65 0.19 -2.24 16 19 C 0.05 1.17 5.29 86.33 0.46 1.63 16 20 N -0.54 -14.91 4.65 -896.34 -4.17 -19.08 16 21 C 0.05 1.22 4.96 86.30 0.43 1.65 16 22 C -0.11 -1.97 5.87 30.60 0.18 -1.79 16 23 C -0.15 -2.17 9.91 71.98 0.71 -1.46 16 24 C 0.09 3.30 4.23 86.32 0.36 3.67 16 25 H 0.26 5.46 7.80 -4.43 -0.03 5.43 16 26 H 0.09 4.48 5.39 -2.38 -0.01 4.47 16 27 H 0.11 4.02 5.73 -2.39 -0.01 4.01 16 28 H 0.27 14.99 7.25 -92.71 -0.67 14.32 16 29 H 0.04 1.51 8.14 -2.39 -0.02 1.50 16 30 H 0.07 2.44 4.84 -2.39 -0.01 2.43 16 31 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 32 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 33 H 0.02 0.61 8.14 -2.39 -0.02 0.59 16 34 H 0.10 1.85 6.22 -2.39 -0.01 1.84 16 35 H 0.07 1.65 7.98 -2.39 -0.02 1.63 16 36 H 0.03 0.71 8.12 -2.39 -0.02 0.69 16 37 H 0.07 1.11 6.44 -2.39 -0.02 1.10 16 38 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 39 H 0.05 0.77 8.14 -2.38 -0.02 0.75 16 40 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 41 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 42 H 0.06 2.27 8.01 -2.39 -0.02 2.25 16 43 H 0.02 0.80 7.87 -2.39 -0.02 0.78 16 Total: -1.00 -71.72 340.33 4.08 -67.64 By element: Atomic # 1 Polarization: 21.49 SS G_CDS: 1.08 Total: 22.57 kcal Atomic # 6 Polarization: -16.88 SS G_CDS: 6.38 Total: -10.50 kcal Atomic # 7 Polarization: -88.26 SS G_CDS: -5.39 Total: -93.65 kcal Atomic # 8 Polarization: -37.00 SS G_CDS: -0.05 Total: -37.05 kcal Atomic # 14 Polarization: 48.93 SS G_CDS: 2.06 Total: 50.99 kcal Total: -71.72 4.08 -67.64 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000907979387.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.735 kcal (2) G-P(sol) polarization free energy of solvation -71.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.635 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds