Wall clock time and date at job start Tue Mar 31 2020 00:59:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 N 1.46501 * 109.46759 * 141.93131 * 3 2 1 5 5 C 1.37094 * 119.99951 * 263.67844 * 4 3 2 6 6 H 1.08005 * 119.99637 * 194.08370 * 5 4 3 7 7 C 1.38948 * 120.00158 * 14.08359 * 5 4 3 8 8 N 1.31408 * 120.00135 * 11.58513 * 7 5 4 9 9 Si 1.86796 * 119.99923 * 191.57678 * 7 5 4 10 10 H 1.48498 * 109.46975 * 90.00491 * 9 7 5 11 11 H 1.48497 * 109.47336 * 210.00123 * 9 7 5 12 12 H 1.48501 * 109.47296 * 330.00378 * 9 7 5 13 13 C 1.34777 * 119.99774 * 83.68014 * 4 3 2 14 14 O 1.21292 * 120.00099 * 3.70856 * 13 4 3 15 15 C 1.50701 * 120.00020 * 183.70390 * 13 4 3 16 16 H 1.09005 * 109.53331 * 307.26009 * 15 13 4 17 17 C 1.53120 * 109.50132 * 67.36056 * 15 13 4 18 18 C 1.53113 * 109.15833 * 177.59706 * 17 15 13 19 19 C 1.53043 * 109.28124 * 302.34517 * 18 17 15 20 20 N 1.46847 * 109.52226 * 59.17762 * 19 18 17 21 21 C 1.46897 * 111.00054 * 174.16008 * 20 19 18 22 22 C 1.53007 * 109.46659 * 66.05105 * 21 20 19 23 23 C 1.52999 * 109.46877 * 180.02562 * 22 21 20 24 24 C 1.46846 * 111.19910 * 298.26167 * 20 19 18 25 25 H 4.40642 * 5.51456 * 179.97438 * 4 1 2 26 26 H 1.08994 * 109.47266 * 21.93513 * 3 2 1 27 27 H 1.08994 * 109.46723 * 261.93204 * 3 2 1 28 28 H 0.96997 * 120.00209 * 180.02562 * 8 7 5 29 29 H 1.08996 * 109.52081 * 57.69056 * 17 15 13 30 30 H 1.08999 * 109.57413 * 297.53306 * 17 15 13 31 31 H 1.09005 * 109.50502 * 182.40838 * 18 17 15 32 32 H 1.09006 * 109.50913 * 62.28595 * 18 17 15 33 33 H 1.09000 * 109.46612 * 179.19889 * 19 18 17 34 34 H 1.09004 * 109.45782 * 299.16618 * 19 18 17 35 35 H 1.08995 * 109.47268 * 186.04546 * 21 20 19 36 36 H 1.08999 * 109.47203 * 306.05169 * 21 20 19 37 37 H 1.09004 * 109.46768 * 299.99444 * 22 21 20 38 38 H 1.08991 * 109.47502 * 59.99821 * 22 21 20 39 39 H 1.09000 * 109.47893 * 59.99921 * 23 22 21 40 40 H 1.09002 * 109.47436 * 180.02562 * 23 22 21 41 41 H 1.09008 * 109.46759 * 299.99649 * 23 22 21 42 42 H 1.08994 * 109.46029 * 301.72400 * 24 20 19 43 43 H 1.09006 * 109.46016 * 181.75375 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1338 1.0883 -0.8517 5 6 3.4856 0.8353 -2.1523 6 1 4.0519 1.5663 -2.7105 7 6 3.1137 -0.3614 -2.7525 8 7 2.2406 -1.1479 -2.1644 9 14 3.8547 -0.8521 -4.3955 10 1 5.0922 -1.6398 -4.1648 11 1 2.8781 -1.6753 -5.1529 12 1 4.1830 0.3686 -5.1749 13 6 3.2367 2.3376 -0.3565 14 8 2.9899 2.5490 0.8121 15 6 3.6585 3.4718 -1.2547 16 1 4.5888 3.2106 -1.7591 17 6 2.5672 3.7314 -2.2969 18 6 2.9764 4.9232 -3.1667 19 6 3.2063 6.1449 -2.2741 20 7 4.2592 5.8462 -1.2950 21 6 4.6036 7.0401 -0.5116 22 6 3.4076 7.4457 0.3523 23 6 3.7661 8.6896 1.1679 24 6 3.8685 4.7355 -0.4174 25 1 -1.0502 -0.0004 0.0000 26 1 3.0098 -0.9524 -0.3839 27 1 3.0092 0.1450 1.0175 28 1 1.9813 -1.9835 -2.5831 29 1 1.6272 3.9545 -1.7922 30 1 2.4435 2.8484 -2.9238 31 1 2.1840 5.1400 -3.8832 32 1 3.8960 4.6850 -3.7013 33 1 3.5117 6.9917 -2.8889 34 1 2.2825 6.3910 -1.7504 35 1 5.4570 6.8202 0.1298 36 1 4.8576 7.8571 -1.1869 37 1 2.5541 7.6657 -0.2891 38 1 3.1535 6.6288 1.0276 39 1 4.0198 9.5064 0.4923 40 1 2.9143 8.9783 1.7837 41 1 4.6197 8.4699 1.8092 42 1 2.9418 4.9882 0.0975 43 1 4.6550 4.5585 0.3163 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000907979388.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:59:43 Heat of formation + Delta-G solvation = 22.994340 kcal Electronic energy + Delta-G solvation = -22718.624816 eV Core-core repulsion = 19572.410767 eV Total energy + Delta-G solvation = -3146.214049 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.59265 -38.02092 -35.15298 -34.59746 -31.99870 -31.66615 -31.07876 -30.41870 -26.68418 -25.93574 -24.83265 -23.14867 -22.82044 -21.34298 -19.40357 -18.80312 -17.73399 -16.68036 -16.14059 -15.36500 -15.16771 -14.54112 -14.34819 -14.28889 -14.00008 -13.91068 -13.64037 -13.09520 -12.97578 -12.39044 -12.28209 -11.97374 -11.81134 -11.65675 -11.56982 -11.41315 -11.35062 -11.10641 -11.05956 -10.61080 -10.49993 -10.35185 -10.26934 -10.05930 -9.84064 -9.40471 -9.32077 -8.69391 -8.32182 -7.97199 -7.91010 -6.34159 -3.95736 3.09091 3.19362 3.21122 3.71265 3.93040 4.11898 4.19649 4.27545 4.92752 4.95343 5.00723 5.04358 5.24858 5.30580 5.36073 5.42668 5.53390 5.68902 5.71691 5.73880 5.79648 5.83603 5.96362 6.00808 6.03236 6.13710 6.20091 6.24547 6.35968 6.40249 6.48453 6.49669 6.77647 6.86482 6.97174 7.09849 7.23488 7.34168 7.38922 7.40159 7.67829 8.34150 8.95568 9.02874 9.45105 9.85290 10.61922 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.020157 B = 0.005462 C = 0.004700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1388.756537 B = 5124.662431 C = 5956.122289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.286 4.286 2 C -0.094 4.094 3 C 0.230 3.770 4 N -0.439 5.439 5 C -0.329 4.329 6 H 0.105 0.895 7 C 0.032 3.968 8 N -0.865 5.865 9 Si 0.923 3.077 10 H -0.277 1.277 11 H -0.284 1.284 12 H -0.269 1.269 13 C 0.465 3.535 14 O -0.606 6.606 15 C -0.080 4.080 16 H 0.091 0.909 17 C -0.111 4.111 18 C -0.114 4.114 19 C 0.054 3.946 20 N -0.539 5.539 21 C 0.058 3.942 22 C -0.168 4.168 23 C -0.145 4.145 24 C 0.078 3.922 25 H 0.197 0.803 26 H 0.130 0.870 27 H 0.060 0.940 28 H 0.269 0.731 29 H 0.051 0.949 30 H 0.091 0.909 31 H 0.062 0.938 32 H 0.070 0.930 33 H 0.067 0.933 34 H 0.032 0.968 35 H 0.073 0.927 36 H 0.070 0.930 37 H 0.060 0.940 38 H 0.069 0.931 39 H 0.051 0.949 40 H 0.051 0.949 41 H 0.054 0.946 42 H 0.042 0.958 43 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.416 11.071 -0.849 11.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.304 4.304 2 C -0.095 4.095 3 C 0.107 3.893 4 N -0.156 5.156 5 C -0.456 4.456 6 H 0.122 0.878 7 C -0.172 4.172 8 N -0.504 5.504 9 Si 0.750 3.250 10 H -0.203 1.203 11 H -0.210 1.210 12 H -0.194 1.194 13 C 0.253 3.747 14 O -0.493 6.493 15 C -0.102 4.102 16 H 0.109 0.891 17 C -0.149 4.149 18 C -0.152 4.152 19 C -0.074 4.074 20 N -0.262 5.262 21 C -0.070 4.070 22 C -0.207 4.207 23 C -0.203 4.203 24 C -0.050 4.050 25 H 0.214 0.786 26 H 0.147 0.853 27 H 0.078 0.922 28 H 0.080 0.920 29 H 0.070 0.930 30 H 0.110 0.890 31 H 0.081 0.919 32 H 0.088 0.912 33 H 0.085 0.915 34 H 0.050 0.950 35 H 0.091 0.909 36 H 0.088 0.912 37 H 0.079 0.921 38 H 0.088 0.912 39 H 0.070 0.930 40 H 0.070 0.930 41 H 0.073 0.927 42 H 0.060 0.940 43 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 2.657 10.797 -0.612 11.136 hybrid contribution -0.813 -0.173 -0.550 0.997 sum 1.843 10.624 -1.161 10.845 Atomic orbital electron populations 1.24232 0.95383 1.04624 1.06207 1.23374 0.94494 0.96463 0.95162 1.18445 0.83870 0.93974 0.92977 1.43695 1.55370 1.05258 1.11258 1.19742 1.33591 1.04160 0.88138 0.87791 1.25284 0.95543 0.96763 0.99585 1.70036 1.28742 1.12738 1.38870 0.85979 0.78673 0.78972 0.81419 1.20273 1.20985 1.19354 1.20112 0.82725 0.83702 0.88165 1.90527 1.56843 1.83837 1.18092 1.20931 1.00314 0.92844 0.96102 0.89099 1.21530 0.97026 0.99041 0.97305 1.21596 1.01451 0.94660 0.97511 1.22107 0.92936 0.97994 0.94313 1.62129 1.41057 1.06139 1.16837 1.22202 0.97019 0.92261 0.95539 1.22242 0.99905 0.98710 0.99818 1.21673 1.01315 0.97560 0.99799 1.21832 0.99970 0.89423 0.93754 0.78566 0.85313 0.92237 0.91985 0.92991 0.89048 0.91894 0.91168 0.91480 0.95017 0.90852 0.91179 0.92100 0.91222 0.92967 0.93037 0.92708 0.93968 0.90894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.29 -6.58 19.25 29.55 0.57 -6.01 16 2 C -0.09 -2.34 11.95 -37.12 -0.44 -2.79 16 3 C 0.23 5.68 5.09 -6.83 -0.03 5.65 16 4 N -0.44 -10.89 2.61 -117.93 -0.31 -11.20 16 5 C -0.33 -7.96 7.75 -14.94 -0.12 -8.08 16 6 H 0.10 2.38 5.73 -52.48 -0.30 2.08 16 7 C 0.03 0.78 5.16 -17.47 -0.09 0.69 16 8 N -0.87 -21.90 8.93 55.50 0.50 -21.41 16 9 Si 0.92 18.94 29.57 -169.99 -5.03 13.92 16 10 H -0.28 -5.68 7.11 56.52 0.40 -5.27 16 11 H -0.28 -5.95 7.11 56.52 0.40 -5.54 16 12 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 13 C 0.46 11.17 6.88 -10.99 -0.08 11.09 16 14 O -0.61 -16.00 15.63 5.55 0.09 -15.91 16 15 C -0.08 -1.60 1.85 -91.69 -0.17 -1.77 16 16 H 0.09 1.81 7.18 -51.93 -0.37 1.44 16 17 C -0.11 -2.06 4.99 -26.61 -0.13 -2.19 16 18 C -0.11 -1.70 6.09 -26.65 -0.16 -1.87 16 19 C 0.05 0.76 5.05 -3.83 -0.02 0.74 16 20 N -0.54 -8.09 4.86 -234.67 -1.14 -9.23 16 21 C 0.06 0.72 5.36 -3.82 -0.02 0.70 16 22 C -0.17 -2.03 5.24 -26.73 -0.14 -2.17 16 23 C -0.15 -1.43 9.91 37.16 0.37 -1.07 16 24 C 0.08 1.40 3.45 -3.83 -0.01 1.38 16 25 H 0.20 3.69 7.80 -54.08 -0.42 3.27 16 26 H 0.13 3.24 5.78 -51.93 -0.30 2.94 16 27 H 0.06 1.44 7.57 -51.93 -0.39 1.05 16 28 H 0.27 6.56 8.31 -40.82 -0.34 6.22 16 29 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 30 H 0.09 1.87 6.11 -51.93 -0.32 1.55 16 31 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 33 H 0.07 0.81 8.06 -51.93 -0.42 0.39 16 34 H 0.03 0.45 6.76 -51.93 -0.35 0.10 16 35 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.07 0.77 8.06 -51.93 -0.42 0.35 16 37 H 0.06 0.75 6.68 -51.93 -0.35 0.40 16 38 H 0.07 0.98 6.50 -51.93 -0.34 0.64 16 39 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 40 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 41 H 0.05 0.52 8.14 -51.92 -0.42 0.10 16 42 H 0.04 0.81 6.46 -51.93 -0.34 0.48 16 43 H 0.07 1.35 8.12 -51.93 -0.42 0.93 16 LS Contribution 337.06 15.07 5.08 5.08 Total: -1.00 -27.98 337.06 -8.12 -36.10 By element: Atomic # 1 Polarization: 15.16 SS G_CDS: -6.83 Total: 8.33 kcal Atomic # 6 Polarization: -5.20 SS G_CDS: -0.48 Total: -5.68 kcal Atomic # 7 Polarization: -40.88 SS G_CDS: -0.95 Total: -41.83 kcal Atomic # 8 Polarization: -16.00 SS G_CDS: 0.09 Total: -15.91 kcal Atomic # 14 Polarization: 18.94 SS G_CDS: -5.03 Total: 13.92 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -27.98 -8.12 -36.10 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000907979388.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.095 kcal (2) G-P(sol) polarization free energy of solvation -27.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.101 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds