Wall clock time and date at job start Tue Mar 31 2020 00:59:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 N 1.46501 * 109.46759 * 141.93131 * 3 2 1 5 5 C 1.37094 * 119.99951 * 263.67844 * 4 3 2 6 6 H 1.08005 * 119.99637 * 194.08370 * 5 4 3 7 7 C 1.38948 * 120.00158 * 14.08359 * 5 4 3 8 8 N 1.31408 * 120.00135 * 11.58513 * 7 5 4 9 9 Si 1.86796 * 119.99923 * 191.57678 * 7 5 4 10 10 H 1.48498 * 109.46975 * 90.00491 * 9 7 5 11 11 H 1.48497 * 109.47336 * 210.00123 * 9 7 5 12 12 H 1.48501 * 109.47296 * 330.00378 * 9 7 5 13 13 C 1.34777 * 119.99774 * 83.68014 * 4 3 2 14 14 O 1.21292 * 120.00099 * 3.70856 * 13 4 3 15 15 C 1.50701 * 120.00020 * 183.70390 * 13 4 3 16 16 H 1.09005 * 109.53331 * 307.26009 * 15 13 4 17 17 C 1.53120 * 109.50132 * 67.36056 * 15 13 4 18 18 C 1.53113 * 109.15833 * 177.59706 * 17 15 13 19 19 C 1.53043 * 109.28124 * 302.34517 * 18 17 15 20 20 N 1.46847 * 109.52226 * 59.17762 * 19 18 17 21 21 C 1.46897 * 111.00054 * 174.16008 * 20 19 18 22 22 C 1.53007 * 109.46659 * 66.05105 * 21 20 19 23 23 C 1.52999 * 109.46877 * 180.02562 * 22 21 20 24 24 C 1.46846 * 111.19910 * 298.26167 * 20 19 18 25 25 H 4.40642 * 5.51456 * 179.97438 * 4 1 2 26 26 H 1.08994 * 109.47266 * 21.93513 * 3 2 1 27 27 H 1.08994 * 109.46723 * 261.93204 * 3 2 1 28 28 H 0.96997 * 120.00209 * 180.02562 * 8 7 5 29 29 H 1.08996 * 109.52081 * 57.69056 * 17 15 13 30 30 H 1.08999 * 109.57413 * 297.53306 * 17 15 13 31 31 H 1.09005 * 109.50502 * 182.40838 * 18 17 15 32 32 H 1.09006 * 109.50913 * 62.28595 * 18 17 15 33 33 H 1.09000 * 109.46612 * 179.19889 * 19 18 17 34 34 H 1.09004 * 109.45782 * 299.16618 * 19 18 17 35 35 H 1.08995 * 109.47268 * 186.04546 * 21 20 19 36 36 H 1.08999 * 109.47203 * 306.05169 * 21 20 19 37 37 H 1.09004 * 109.46768 * 299.99444 * 22 21 20 38 38 H 1.08991 * 109.47502 * 59.99821 * 22 21 20 39 39 H 1.09000 * 109.47893 * 59.99921 * 23 22 21 40 40 H 1.09002 * 109.47436 * 180.02562 * 23 22 21 41 41 H 1.09008 * 109.46759 * 299.99649 * 23 22 21 42 42 H 1.08994 * 109.46029 * 301.72400 * 24 20 19 43 43 H 1.09006 * 109.46016 * 181.75375 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1338 1.0883 -0.8517 5 6 3.4856 0.8353 -2.1523 6 1 4.0519 1.5663 -2.7105 7 6 3.1137 -0.3614 -2.7525 8 7 2.2406 -1.1479 -2.1644 9 14 3.8547 -0.8521 -4.3955 10 1 5.0922 -1.6398 -4.1648 11 1 2.8781 -1.6753 -5.1529 12 1 4.1830 0.3686 -5.1749 13 6 3.2367 2.3376 -0.3565 14 8 2.9899 2.5490 0.8121 15 6 3.6585 3.4718 -1.2547 16 1 4.5888 3.2106 -1.7591 17 6 2.5672 3.7314 -2.2969 18 6 2.9764 4.9232 -3.1667 19 6 3.2063 6.1449 -2.2741 20 7 4.2592 5.8462 -1.2950 21 6 4.6036 7.0401 -0.5116 22 6 3.4076 7.4457 0.3523 23 6 3.7661 8.6896 1.1679 24 6 3.8685 4.7355 -0.4174 25 1 -1.0502 -0.0004 0.0000 26 1 3.0098 -0.9524 -0.3839 27 1 3.0092 0.1450 1.0175 28 1 1.9813 -1.9835 -2.5831 29 1 1.6272 3.9545 -1.7922 30 1 2.4435 2.8484 -2.9238 31 1 2.1840 5.1400 -3.8832 32 1 3.8960 4.6850 -3.7013 33 1 3.5117 6.9917 -2.8889 34 1 2.2825 6.3910 -1.7504 35 1 5.4570 6.8202 0.1298 36 1 4.8576 7.8571 -1.1869 37 1 2.5541 7.6657 -0.2891 38 1 3.1535 6.6288 1.0276 39 1 4.0198 9.5064 0.4923 40 1 2.9143 8.9783 1.7837 41 1 4.6197 8.4699 1.8092 42 1 2.9418 4.9882 0.0975 43 1 4.6550 4.5585 0.3163 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000907979388.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:59:43 Heat of formation + Delta-G solvation = 7.252625 kcal Electronic energy + Delta-G solvation = -22719.307428 eV Core-core repulsion = 19572.410767 eV Total energy + Delta-G solvation = -3146.896661 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.19826 -39.54027 -37.04743 -35.85094 -33.82192 -33.33425 -32.46090 -31.85625 -28.49545 -27.09226 -26.67712 -24.39779 -24.21823 -22.50241 -21.08298 -20.28567 -19.51566 -18.43822 -17.96547 -16.75087 -16.36451 -16.08548 -16.00707 -15.90689 -15.49147 -15.24166 -14.94356 -14.58397 -14.46566 -13.89239 -13.77219 -13.55851 -13.35882 -13.21707 -12.76232 -12.69888 -12.63541 -12.53824 -12.27189 -12.17964 -12.05711 -11.78224 -11.55989 -11.38806 -11.32307 -11.25075 -11.13450 -10.61619 -10.20128 -9.84419 -9.17947 -8.20451 -5.88421 1.44236 1.51261 1.61363 1.86330 2.10012 2.33519 2.38185 2.86714 3.15164 3.34376 3.84019 3.90151 3.95653 4.03657 4.05789 4.14821 4.31746 4.39551 4.42277 4.48568 4.65401 4.67702 4.71313 4.76220 4.86537 4.92311 4.96729 5.02193 5.05748 5.14318 5.15865 5.18428 5.26265 5.38330 5.39502 5.41922 5.44040 5.52137 5.78426 6.10993 6.23899 6.43331 7.06251 7.12957 7.55141 7.95490 8.75726 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.020157 B = 0.005462 C = 0.004700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1388.756537 B = 5124.662431 C = 5956.122289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.266 4.266 2 C -0.144 4.144 3 C 0.231 3.769 4 N -0.446 5.446 5 C -0.342 4.342 6 H 0.115 0.885 7 C -0.007 4.007 8 N -0.890 5.890 9 Si 0.990 3.010 10 H -0.274 1.274 11 H -0.289 1.289 12 H -0.256 1.256 13 C 0.450 3.550 14 O -0.639 6.639 15 C -0.073 4.073 16 H 0.092 0.908 17 C -0.103 4.103 18 C -0.107 4.107 19 C 0.055 3.945 20 N -0.541 5.541 21 C 0.058 3.942 22 C -0.164 4.164 23 C -0.141 4.141 24 C 0.093 3.907 25 H 0.237 0.763 26 H 0.121 0.879 27 H 0.052 0.948 28 H 0.268 0.732 29 H 0.033 0.967 30 H 0.071 0.929 31 H 0.085 0.915 32 H 0.075 0.925 33 H 0.098 0.902 34 H 0.028 0.972 35 H 0.073 0.927 36 H 0.096 0.904 37 H 0.060 0.940 38 H 0.040 0.960 39 H 0.069 0.931 40 H 0.053 0.947 41 H 0.056 0.944 42 H 0.022 0.978 43 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.763 12.875 -2.796 13.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.284 4.284 2 C -0.145 4.145 3 C 0.109 3.891 4 N -0.163 5.163 5 C -0.468 4.468 6 H 0.132 0.868 7 C -0.208 4.208 8 N -0.529 5.529 9 Si 0.814 3.186 10 H -0.200 1.200 11 H -0.214 1.214 12 H -0.180 1.180 13 C 0.240 3.760 14 O -0.528 6.528 15 C -0.094 4.094 16 H 0.110 0.890 17 C -0.142 4.142 18 C -0.145 4.145 19 C -0.073 4.073 20 N -0.264 5.264 21 C -0.070 4.070 22 C -0.203 4.203 23 C -0.199 4.199 24 C -0.035 4.035 25 H 0.253 0.747 26 H 0.138 0.862 27 H 0.070 0.930 28 H 0.079 0.921 29 H 0.052 0.948 30 H 0.089 0.911 31 H 0.103 0.897 32 H 0.094 0.906 33 H 0.117 0.883 34 H 0.046 0.954 35 H 0.092 0.908 36 H 0.114 0.886 37 H 0.078 0.922 38 H 0.059 0.941 39 H 0.088 0.912 40 H 0.072 0.928 41 H 0.075 0.925 42 H 0.040 0.960 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 3.012 12.616 -2.562 13.221 hybrid contribution -0.986 -0.763 0.114 1.252 sum 2.026 11.853 -2.448 12.272 Atomic orbital electron populations 1.25185 0.96418 1.02604 1.04165 1.23709 0.95292 0.98398 0.97099 1.18319 0.84449 0.93790 0.92588 1.43930 1.55146 1.05553 1.11664 1.20058 1.33968 1.04812 0.88010 0.86762 1.26104 0.95559 0.96408 1.02777 1.70168 1.29610 1.12880 1.40192 0.84954 0.77546 0.78762 0.77345 1.20010 1.21447 1.18008 1.20901 0.82341 0.84412 0.88369 1.90486 1.58338 1.84367 1.19619 1.20896 1.00570 0.92097 0.95874 0.88955 1.21439 0.95757 1.00079 0.96889 1.21576 1.02381 0.93213 0.97286 1.22185 0.92612 0.98429 0.94072 1.62140 1.41167 1.06380 1.16674 1.22313 0.96976 0.91773 0.95934 1.22173 0.99786 0.98800 0.99503 1.21641 1.01513 0.96846 0.99892 1.21547 0.98599 0.89873 0.93519 0.74681 0.86179 0.92997 0.92133 0.94776 0.91065 0.89687 0.90588 0.88332 0.95422 0.90839 0.88573 0.92160 0.94108 0.91201 0.92835 0.92464 0.95954 0.92125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.27 -12.12 19.25 74.32 1.43 -10.68 16 2 C -0.14 -7.36 11.95 31.13 0.37 -6.99 16 3 C 0.23 11.93 5.09 84.58 0.43 12.36 16 4 N -0.45 -22.87 2.61 -645.42 -1.68 -24.56 16 5 C -0.34 -16.71 7.75 84.04 0.65 -16.06 16 6 H 0.11 5.22 5.73 -2.91 -0.02 5.21 16 7 C -0.01 -0.34 5.16 84.93 0.44 0.10 16 8 N -0.89 -45.56 8.93 21.66 0.19 -45.37 16 9 Si 0.99 38.35 29.57 68.60 2.03 40.37 16 10 H -0.27 -10.49 7.11 99.48 0.71 -9.78 16 11 H -0.29 -11.33 7.11 99.48 0.71 -10.63 16 12 H -0.26 -9.34 7.11 99.48 0.71 -8.64 16 13 C 0.45 22.41 6.88 87.66 0.60 23.01 16 14 O -0.64 -35.26 15.63 -3.07 -0.05 -35.31 16 15 C -0.07 -2.94 1.85 -11.49 -0.02 -2.96 16 16 H 0.09 3.68 7.18 -2.38 -0.02 3.66 16 17 C -0.10 -3.82 4.99 30.67 0.15 -3.67 16 18 C -0.11 -2.94 6.09 30.65 0.19 -2.75 16 19 C 0.05 1.37 5.05 86.33 0.44 1.81 16 20 N -0.54 -15.32 4.86 -896.35 -4.35 -19.68 16 21 C 0.06 1.31 5.36 86.31 0.46 1.77 16 22 C -0.16 -3.76 5.24 30.60 0.16 -3.60 16 23 C -0.14 -2.50 9.91 71.98 0.71 -1.78 16 24 C 0.09 3.38 3.45 86.33 0.30 3.67 16 25 H 0.24 8.33 7.80 -4.41 -0.03 8.30 16 26 H 0.12 6.32 5.78 -2.39 -0.01 6.31 16 27 H 0.05 2.67 7.57 -2.39 -0.02 2.65 16 28 H 0.27 13.18 8.31 -92.71 -0.77 12.41 16 29 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 30 H 0.07 2.91 6.11 -2.39 -0.01 2.89 16 31 H 0.08 1.99 8.14 -2.38 -0.02 1.97 16 32 H 0.08 2.04 8.14 -2.38 -0.02 2.02 16 33 H 0.10 1.94 8.06 -2.39 -0.02 1.92 16 34 H 0.03 0.73 6.76 -2.38 -0.02 0.72 16 35 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 36 H 0.10 1.74 8.06 -2.39 -0.02 1.72 16 37 H 0.06 1.38 6.68 -2.39 -0.02 1.37 16 38 H 0.04 1.17 6.50 -2.39 -0.02 1.15 16 39 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 40 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 41 H 0.06 0.98 8.14 -2.38 -0.02 0.96 16 42 H 0.02 0.89 6.46 -2.39 -0.02 0.88 16 43 H 0.06 2.31 8.12 -2.38 -0.02 2.29 16 Total: -1.00 -61.50 337.06 3.43 -58.06 By element: Atomic # 1 Polarization: 31.27 SS G_CDS: 0.98 Total: 32.24 kcal Atomic # 6 Polarization: -12.09 SS G_CDS: 6.32 Total: -5.77 kcal Atomic # 7 Polarization: -83.76 SS G_CDS: -5.84 Total: -89.60 kcal Atomic # 8 Polarization: -35.26 SS G_CDS: -0.05 Total: -35.31 kcal Atomic # 14 Polarization: 38.35 SS G_CDS: 2.03 Total: 40.37 kcal Total: -61.50 3.43 -58.06 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000907979388.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.317 kcal (2) G-P(sol) polarization free energy of solvation -61.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.064 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds