Wall clock time and date at job start Tue Mar 31 2020 00:42:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17404 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 N 1.46500 * 109.47229 * 327.83144 * 3 2 1 5 5 C 1.37101 * 120.00146 * 275.13500 * 4 3 2 6 6 H 1.07991 * 120.00089 * 188.23881 * 5 4 3 7 7 C 1.38953 * 119.99653 * 8.24444 * 5 4 3 8 8 N 1.31414 * 120.00085 * 14.17043 * 7 5 4 9 9 Si 1.86793 * 119.99844 * 194.17175 * 7 5 4 10 10 H 1.48503 * 109.47390 * 89.99894 * 9 7 5 11 11 H 1.48493 * 109.47427 * 210.00115 * 9 7 5 12 12 H 1.48508 * 109.47212 * 329.99827 * 9 7 5 13 13 C 1.34782 * 119.99949 * 95.13785 * 4 3 2 14 14 O 1.21285 * 119.99757 * 177.00806 * 13 4 3 15 15 C 1.50701 * 119.99733 * 357.01109 * 13 4 3 16 16 C 1.53006 * 109.46926 * 289.71418 * 15 13 4 17 17 C 1.52998 * 109.46993 * 169.71875 * 15 13 4 18 18 N 1.46895 * 109.47506 * 49.71525 * 15 13 4 19 19 C 1.46843 * 111.00099 * 185.03010 * 18 15 13 20 20 C 1.53038 * 109.52494 * 174.16180 * 19 18 15 21 21 C 1.53123 * 109.27947 * 59.17823 * 20 19 18 22 22 C 1.53121 * 109.15837 * 302.35019 * 21 20 19 23 23 C 1.46851 * 110.99851 * 60.82151 * 18 15 13 24 24 H 4.40644 * 5.51379 * 179.97438 * 4 1 2 25 25 H 1.09000 * 109.47044 * 207.82843 * 3 2 1 26 26 H 1.09005 * 109.47320 * 87.83486 * 3 2 1 27 27 H 0.96999 * 119.99607 * 179.97438 * 8 7 5 28 28 H 1.09001 * 109.46954 * 191.27858 * 16 15 13 29 29 H 1.08993 * 109.46855 * 311.28103 * 16 15 13 30 30 H 1.09000 * 109.46761 * 71.28344 * 16 15 13 31 31 H 1.08999 * 109.47001 * 299.99870 * 17 15 13 32 32 H 1.08999 * 109.47334 * 59.99708 * 17 15 13 33 33 H 1.08998 * 109.47404 * 179.97438 * 17 15 13 34 34 H 1.08998 * 109.46489 * 54.14110 * 19 18 15 35 35 H 1.09003 * 109.46363 * 294.17618 * 19 18 15 36 36 H 1.09004 * 109.50433 * 179.11541 * 20 19 18 37 37 H 1.08996 * 109.50576 * 299.24004 * 20 19 18 38 38 H 1.09003 * 109.52096 * 62.24729 * 21 20 19 39 39 H 1.08991 * 109.52585 * 182.44259 * 21 20 19 40 40 H 1.09001 * 109.50282 * 177.59361 * 22 21 20 41 41 H 1.09001 * 109.49939 * 297.70740 * 22 21 20 42 42 H 1.08994 * 109.46227 * 65.82067 * 23 18 15 43 43 H 1.09004 * 109.46423 * 305.85239 * 23 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1349 -1.1683 0.7354 5 6 3.2632 -1.1157 2.0994 6 1 3.7462 -1.9242 2.6278 7 6 2.7716 -0.0222 2.8017 8 7 1.9489 0.8189 2.2163 9 14 3.2802 0.2523 4.5780 10 1 4.5048 1.0913 4.6183 11 1 2.1843 0.9407 5.3060 12 1 3.5560 -1.0572 5.2220 13 6 3.4586 -2.2954 0.0710 14 8 3.9144 -3.2445 0.6731 15 6 3.2541 -2.3763 -1.4199 16 6 1.7561 -2.4263 -1.7272 17 6 3.9278 -3.6397 -1.9592 18 7 3.8462 -1.1943 -2.0603 19 6 3.5627 -1.1788 -3.5010 20 6 4.0664 0.1330 -4.1073 21 6 5.5729 0.2571 -3.8633 22 6 5.8454 0.1895 -2.3580 23 6 5.2902 -1.1239 -1.8025 24 1 -1.0498 -0.0002 0.0003 25 1 3.0089 0.9096 0.4797 26 1 3.0094 -0.0380 -1.0270 27 1 1.6055 1.5821 2.7068 28 1 1.6088 -2.6846 -2.7759 29 1 1.2810 -3.1784 -1.0975 30 1 1.3115 -1.4514 -1.5273 31 1 4.9950 -3.6042 -1.7402 32 1 3.4885 -4.5168 -1.4840 33 1 3.7796 -3.6985 -3.0374 34 1 2.4878 -1.2635 -3.6606 35 1 4.0679 -2.0177 -3.9796 36 1 3.8699 0.1374 -5.1795 37 1 3.5516 0.9718 -3.6389 38 1 6.0916 -0.5602 -4.3643 39 1 5.9282 1.2100 -4.2553 40 1 6.9199 0.2344 -2.1803 41 1 5.3586 1.0292 -1.8621 42 1 5.7872 -1.9631 -2.2890 43 1 5.4700 -1.1687 -0.7283 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000907979436.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:42:32 Heat of formation + Delta-G solvation = 51.383998 kcal Electronic energy + Delta-G solvation = -24005.126846 eV Core-core repulsion = 20860.143865 eV Total energy + Delta-G solvation = -3144.982981 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.18789 -37.69249 -35.21467 -34.48072 -31.76089 -31.16837 -30.71893 -29.93384 -26.89902 -26.20882 -25.00513 -23.93801 -22.78167 -21.29957 -19.40134 -18.23299 -17.69084 -16.75096 -16.27564 -15.13332 -14.82689 -14.53759 -14.29446 -14.12439 -13.89005 -13.76769 -13.27333 -13.10599 -12.81120 -12.41254 -12.13178 -11.98162 -11.79349 -11.56008 -11.39189 -11.32310 -11.20102 -10.97096 -10.86089 -10.60903 -10.51793 -10.40076 -10.19312 -10.17452 -10.04495 -9.24030 -9.04620 -8.56093 -8.31013 -7.89225 -7.49497 -6.14534 -3.73590 3.18353 3.28575 3.33507 3.69818 4.03374 4.27238 4.29543 4.40529 4.90663 4.96026 5.06061 5.09795 5.18724 5.38338 5.45249 5.56230 5.58978 5.70068 5.75950 5.82630 5.90259 5.96168 5.97309 6.03326 6.05710 6.14761 6.22188 6.25739 6.30198 6.36916 6.44839 6.50713 6.60280 6.79930 7.10709 7.26998 7.35635 7.38684 7.42563 7.64922 8.14281 8.56323 9.12497 9.23698 9.52224 10.05576 10.75528 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.018721 B = 0.006975 C = 0.006906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1495.322871 B = 4013.523516 C = 4053.387402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.307 4.307 2 C -0.070 4.070 3 C 0.185 3.815 4 N -0.422 5.422 5 C -0.309 4.309 6 H 0.103 0.897 7 C 0.029 3.971 8 N -0.864 5.864 9 Si 0.924 3.076 10 H -0.278 1.278 11 H -0.285 1.285 12 H -0.271 1.271 13 C 0.455 3.545 14 O -0.595 6.595 15 C 0.098 3.902 16 C -0.149 4.149 17 C -0.155 4.155 18 N -0.510 5.510 19 C 0.045 3.955 20 C -0.117 4.117 21 C -0.119 4.119 22 C -0.116 4.116 23 C 0.048 3.952 24 H 0.191 0.809 25 H 0.102 0.898 26 H 0.134 0.866 27 H 0.266 0.734 28 H 0.052 0.948 29 H 0.059 0.941 30 H 0.087 0.913 31 H 0.058 0.942 32 H 0.066 0.934 33 H 0.050 0.950 34 H 0.079 0.921 35 H 0.035 0.965 36 H 0.062 0.938 37 H 0.073 0.927 38 H 0.055 0.945 39 H 0.059 0.941 40 H 0.063 0.937 41 H 0.074 0.926 42 H 0.036 0.964 43 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.026 1.093 -12.673 13.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.326 4.326 2 C -0.073 4.073 3 C 0.063 3.937 4 N -0.138 5.138 5 C -0.437 4.437 6 H 0.120 0.880 7 C -0.174 4.174 8 N -0.503 5.503 9 Si 0.751 3.249 10 H -0.204 1.204 11 H -0.211 1.211 12 H -0.196 1.196 13 C 0.242 3.758 14 O -0.480 6.480 15 C 0.006 3.994 16 C -0.206 4.206 17 C -0.214 4.214 18 N -0.235 5.235 19 C -0.083 4.083 20 C -0.154 4.154 21 C -0.157 4.157 22 C -0.154 4.154 23 C -0.080 4.080 24 H 0.208 0.792 25 H 0.120 0.880 26 H 0.150 0.850 27 H 0.077 0.923 28 H 0.071 0.929 29 H 0.078 0.922 30 H 0.106 0.894 31 H 0.077 0.923 32 H 0.085 0.915 33 H 0.069 0.931 34 H 0.097 0.903 35 H 0.053 0.947 36 H 0.080 0.920 37 H 0.091 0.909 38 H 0.073 0.927 39 H 0.078 0.922 40 H 0.082 0.918 41 H 0.092 0.908 42 H 0.054 0.946 43 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 2.965 1.232 -12.067 12.487 hybrid contribution 0.049 -0.402 0.781 0.880 sum 3.014 0.830 -11.286 11.711 Atomic orbital electron populations 1.24114 0.95294 1.04553 1.08666 1.23326 0.94459 0.96248 0.93218 1.19775 0.83815 0.90705 0.99448 1.43655 1.53846 1.09902 1.06368 1.19798 1.36133 1.06072 0.81706 0.87972 1.25261 0.95546 0.96581 1.00028 1.70101 1.28374 1.14954 1.36852 0.85957 0.78028 0.78611 0.82278 1.20441 1.21132 1.19592 1.19540 0.85413 0.83323 0.87499 1.90510 1.50918 1.37419 1.69196 1.21231 0.95780 0.88776 0.93623 1.22136 0.93537 1.04598 1.00370 1.22123 1.01467 0.98601 0.99250 1.62270 1.12524 1.38032 1.10711 1.22229 1.01242 0.96810 0.88020 1.21597 0.95937 0.98246 0.99655 1.21572 0.96337 1.01156 0.96606 1.21594 1.00172 0.98319 0.95333 1.22177 0.87228 0.96602 1.01948 0.79179 0.87990 0.84995 0.92333 0.92904 0.92191 0.89430 0.92251 0.91479 0.93107 0.90256 0.94716 0.91981 0.90874 0.92656 0.92186 0.91830 0.90767 0.94559 0.89879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.31 -6.71 18.83 29.55 0.56 -6.15 16 2 C -0.07 -1.64 8.53 -37.12 -0.32 -1.95 16 3 C 0.19 4.25 4.69 -6.83 -0.03 4.21 16 4 N -0.42 -10.73 2.60 -117.93 -0.31 -11.03 16 5 C -0.31 -8.63 9.49 -14.93 -0.14 -8.78 16 6 H 0.10 3.02 7.22 -52.49 -0.38 2.64 16 7 C 0.03 0.76 5.19 -17.47 -0.09 0.67 16 8 N -0.86 -22.83 8.36 55.50 0.46 -22.36 16 9 Si 0.92 21.04 29.58 -169.99 -5.03 16.01 16 10 H -0.28 -6.22 7.11 56.52 0.40 -5.81 16 11 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 12 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 13 C 0.45 11.02 5.00 -10.98 -0.05 10.96 16 14 O -0.60 -16.49 15.57 5.55 0.09 -16.41 16 15 C 0.10 1.83 0.29 -132.75 -0.04 1.79 16 16 C -0.15 -2.63 7.36 37.16 0.27 -2.35 16 17 C -0.16 -2.64 7.11 37.16 0.26 -2.37 16 18 N -0.51 -8.19 1.15 -220.36 -0.25 -8.45 16 19 C 0.04 0.58 4.69 -3.84 -0.02 0.56 16 20 C -0.12 -1.30 6.09 -26.65 -0.16 -1.46 16 21 C -0.12 -1.29 6.00 -26.61 -0.16 -1.45 16 22 C -0.12 -1.51 6.09 -26.65 -0.16 -1.67 16 23 C 0.05 0.76 4.67 -3.83 -0.02 0.74 16 24 H 0.19 3.50 7.80 -54.10 -0.42 3.08 16 25 H 0.10 2.54 6.29 -51.93 -0.33 2.22 16 26 H 0.13 2.67 4.05 -56.44 -0.23 2.44 16 27 H 0.27 6.78 8.31 -40.82 -0.34 6.44 16 28 H 0.05 0.76 6.86 -51.93 -0.36 0.40 16 29 H 0.06 1.13 8.09 -51.93 -0.42 0.71 16 30 H 0.09 1.65 4.11 -51.93 -0.21 1.44 16 31 H 0.06 1.04 6.52 -51.93 -0.34 0.70 16 32 H 0.07 1.21 7.99 -51.93 -0.41 0.79 16 33 H 0.05 0.71 6.65 -51.93 -0.35 0.37 16 34 H 0.08 1.01 6.15 -51.93 -0.32 0.69 16 35 H 0.03 0.43 6.73 -51.93 -0.35 0.08 16 36 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 41 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 42 H 0.04 0.55 6.62 -51.93 -0.34 0.20 16 43 H 0.08 1.59 6.92 -51.93 -0.36 1.23 16 LS Contribution 321.74 15.07 4.85 4.85 Total: -1.00 -30.29 321.74 -6.78 -37.06 By element: Atomic # 1 Polarization: 14.06 SS G_CDS: -6.49 Total: 7.57 kcal Atomic # 6 Polarization: -7.15 SS G_CDS: -0.10 Total: -7.25 kcal Atomic # 7 Polarization: -41.75 SS G_CDS: -0.10 Total: -41.84 kcal Atomic # 8 Polarization: -16.49 SS G_CDS: 0.09 Total: -16.41 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.03 Total: 16.01 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -30.29 -6.78 -37.06 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000907979436.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.445 kcal (2) G-P(sol) polarization free energy of solvation -30.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.061 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds