Wall clock time and date at job start Tue Mar 31 2020 00:16:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52997 * 109.47117 * 2 1 4 4 C 1.53001 * 109.47706 * 120.00347 * 2 1 3 5 5 N 1.46900 * 109.46888 * 60.36033 * 4 2 1 6 6 C 1.46897 * 111.00037 * 88.95386 * 5 4 2 7 7 C 1.50699 * 109.47287 * 291.86284 * 6 5 4 8 8 C 1.38228 * 119.61875 * 95.91563 * 7 6 5 9 9 C 1.38628 * 119.16302 * 179.79140 * 8 7 6 10 10 C 1.38679 * 118.41412 * 0.47805 * 9 8 7 11 11 C 1.38172 * 119.16857 * 359.50467 * 10 9 8 12 12 N 1.31853 * 119.61670 * 275.94471 * 7 6 5 13 13 C 1.46901 * 110.99759 * 212.90865 * 5 4 2 14 14 C 1.52996 * 109.47331 * 74.67953 * 13 5 4 15 15 H 1.09001 * 109.47344 * 52.52798 * 14 13 5 16 16 O 1.42896 * 109.47306 * 292.53139 * 14 13 5 17 17 C 1.50706 * 109.47419 * 172.53199 * 14 13 5 18 18 H 1.08003 * 119.99488 * 5.59661 * 17 14 13 19 19 C 1.37872 * 120.00149 * 185.60728 * 17 14 13 20 20 N 1.31519 * 120.00021 * 186.61059 * 19 17 14 21 21 Si 1.86802 * 120.00026 * 6.60149 * 19 17 14 22 22 H 1.48507 * 109.46806 * 94.88406 * 21 19 17 23 23 H 1.48503 * 109.47018 * 214.88033 * 21 19 17 24 24 H 1.48496 * 109.47229 * 334.88055 * 21 19 17 25 25 H 1.09006 * 109.47312 * 184.81218 * 1 2 3 26 26 H 1.09007 * 109.47255 * 304.80406 * 1 2 3 27 27 H 1.09001 * 109.47720 * 64.80950 * 1 2 3 28 28 H 1.08999 * 109.47015 * 240.00472 * 2 1 3 29 29 H 1.09003 * 109.47411 * 180.02562 * 3 2 1 30 30 H 1.09006 * 109.47597 * 300.00717 * 3 2 1 31 31 H 1.09011 * 109.47128 * 60.00353 * 3 2 1 32 32 H 1.09000 * 109.46856 * 300.36399 * 4 2 1 33 33 H 1.08992 * 109.47262 * 180.36442 * 4 2 1 34 34 H 1.09003 * 109.47296 * 171.86614 * 6 5 4 35 35 H 1.08997 * 109.46951 * 51.86037 * 6 5 4 36 36 H 1.07999 * 120.41655 * 0.02562 * 8 7 6 37 37 H 1.07992 * 120.79145 * 180.23228 * 9 8 7 38 38 H 1.08004 * 120.41290 * 179.78260 * 10 9 8 39 39 H 1.07998 * 119.61930 * 180.25592 * 11 10 9 40 40 H 1.09002 * 109.47008 * 194.67523 * 13 5 4 41 41 H 1.09003 * 109.47329 * 314.67749 * 13 5 4 42 42 H 0.96700 * 114.00040 * 301.51288 * 16 14 13 43 43 H 0.96992 * 119.99997 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 7 1.5576 -2.1088 1.2447 6 6 2.4965 -2.9904 0.5382 7 6 2.4945 -2.6527 -0.9304 8 6 3.4557 -1.7977 -1.4361 9 6 3.4477 -1.4969 -2.7894 10 6 2.4625 -2.0620 -3.5851 11 6 1.5345 -2.9082 -3.0089 12 7 1.5754 -3.1756 -1.7181 13 6 1.3150 -2.5861 2.6127 14 6 0.0286 -1.9573 3.1517 15 1 -0.7834 -2.1286 2.4450 16 8 0.2213 -0.5519 3.3241 17 6 -0.3191 -2.5830 4.4779 18 1 0.3597 -3.2860 4.9378 19 6 -1.5038 -2.2583 5.1039 20 7 -1.7491 -2.7011 6.3178 21 14 -2.7605 -1.1891 4.2281 22 1 -3.7620 -2.0539 3.5538 23 1 -3.4446 -0.3181 5.2173 24 1 -2.0740 -0.3456 3.2170 25 1 -0.3634 -1.0241 0.0862 26 1 -0.3634 0.5866 0.8439 27 1 -0.3634 0.4374 -0.9299 28 1 1.8932 -0.5138 -0.8900 29 1 3.1300 1.4425 -0.0005 30 1 1.6765 1.9564 -0.8899 31 1 1.6766 1.9563 0.8901 32 1 1.6715 -0.2113 2.1392 33 1 3.1300 -0.7156 1.2524 34 1 2.1917 -4.0283 0.6727 35 1 3.4994 -2.8510 0.9417 36 1 4.2059 -1.3725 -0.7859 37 1 4.1885 -0.8351 -3.2130 38 1 2.4238 -1.8469 -4.6428 39 1 0.7667 -3.3555 -3.6226 40 1 1.2138 -3.6714 2.6062 41 1 2.1526 -2.3031 3.2502 42 1 0.9453 -0.3248 3.9236 43 1 -2.5823 -2.4723 6.7583 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932449576.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:16:59 Heat of formation + Delta-G solvation = -9.703745 kcal Electronic energy + Delta-G solvation = -22918.957932 eV Core-core repulsion = 19771.325988 eV Total energy + Delta-G solvation = -3147.631944 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.40518 -38.05321 -35.56712 -34.14159 -32.41290 -32.24900 -31.64318 -28.79571 -26.79056 -26.62855 -25.50467 -23.51477 -22.98457 -21.22819 -20.33650 -19.62486 -17.27027 -16.82714 -16.32473 -15.70581 -15.33071 -14.99509 -14.67694 -14.37379 -14.01363 -13.70282 -13.46451 -13.37398 -13.18824 -13.06437 -12.70197 -12.51040 -11.95525 -11.74430 -11.71394 -11.34065 -11.30513 -11.09003 -10.80099 -10.55622 -10.50866 -10.22639 -10.12644 -9.79635 -9.78125 -9.34055 -9.12378 -8.85539 -8.59091 -8.20114 -7.74363 -6.11339 -4.21209 1.09970 1.29712 3.41640 3.49838 3.72212 3.75233 4.32378 4.48115 4.54565 4.76158 4.81326 5.00557 5.10879 5.20357 5.27713 5.34904 5.47936 5.50797 5.58926 5.67146 5.72988 5.82716 5.91677 5.96609 6.07256 6.09740 6.12187 6.14664 6.22661 6.29790 6.41054 6.45597 6.55101 6.67471 6.69330 6.87034 7.03718 7.30164 7.53767 7.61246 7.80760 8.11183 8.31532 8.86116 9.05304 9.54596 10.99602 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.024167 B = 0.005181 C = 0.004947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1158.338528 B = 5402.739986 C = 5658.691934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.094 4.094 3 C -0.143 4.143 4 C 0.043 3.957 5 N -0.522 5.522 6 C 0.097 3.903 7 C 0.156 3.844 8 C -0.163 4.163 9 C -0.080 4.080 10 C -0.183 4.183 11 C 0.099 3.901 12 N -0.464 5.464 13 C 0.043 3.957 14 C 0.205 3.795 15 H 0.065 0.935 16 O -0.575 6.575 17 C -0.562 4.562 18 H 0.070 0.930 19 C 0.088 3.912 20 N -0.893 5.893 21 Si 0.877 3.123 22 H -0.287 1.287 23 H -0.293 1.293 24 H -0.233 1.233 25 H 0.068 0.932 26 H 0.056 0.944 27 H 0.028 0.972 28 H 0.067 0.933 29 H 0.044 0.956 30 H 0.047 0.953 31 H 0.055 0.945 32 H 0.106 0.894 33 H 0.021 0.979 34 H 0.089 0.911 35 H 0.044 0.956 36 H 0.129 0.871 37 H 0.129 0.871 38 H 0.129 0.871 39 H 0.152 0.848 40 H 0.074 0.926 41 H 0.029 0.971 42 H 0.350 0.650 43 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.255 4.204 -17.624 21.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.112 4.112 3 C -0.201 4.201 4 C -0.085 4.085 5 N -0.246 5.246 6 C -0.031 4.031 7 C 0.017 3.983 8 C -0.184 4.184 9 C -0.106 4.106 10 C -0.203 4.203 11 C -0.058 4.058 12 N -0.173 5.173 13 C -0.084 4.084 14 C 0.148 3.852 15 H 0.083 0.917 16 O -0.381 6.381 17 C -0.600 4.600 18 H 0.089 0.911 19 C -0.117 4.117 20 N -0.530 5.530 21 Si 0.703 3.297 22 H -0.213 1.213 23 H -0.220 1.220 24 H -0.156 1.156 25 H 0.087 0.913 26 H 0.075 0.925 27 H 0.047 0.953 28 H 0.085 0.915 29 H 0.063 0.937 30 H 0.066 0.934 31 H 0.074 0.926 32 H 0.124 0.876 33 H 0.040 0.960 34 H 0.107 0.893 35 H 0.062 0.938 36 H 0.147 0.853 37 H 0.147 0.853 38 H 0.147 0.853 39 H 0.169 0.831 40 H 0.092 0.908 41 H 0.047 0.953 42 H 0.196 0.804 43 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 9.564 3.634 -17.779 20.513 hybrid contribution 1.149 0.965 0.058 1.501 sum 10.713 4.599 -17.721 21.212 Atomic orbital electron populations 1.21628 0.94623 1.03014 0.99575 1.21273 0.97034 0.94546 0.98388 1.21799 0.99874 0.97020 1.01439 1.22660 0.95666 0.89337 1.00815 1.61904 1.43854 1.01390 1.17427 1.21089 0.95126 0.98986 0.87904 1.21172 0.89463 0.91650 0.96027 1.21925 1.00743 0.99625 0.96062 1.21482 0.97702 0.97843 0.93597 1.22073 0.97162 0.99976 1.01099 1.22758 0.97078 0.94772 0.91228 1.67540 1.21860 1.23135 1.04759 1.22840 0.99378 1.00420 0.85787 1.19736 0.91998 0.78293 0.95201 0.91724 1.86613 1.56173 1.27239 1.68034 1.21522 1.06104 1.27943 1.04389 0.91149 1.24965 0.98045 0.94493 0.94177 1.69963 1.25127 1.45238 1.12691 0.86794 0.80699 0.81252 0.80923 1.21316 1.21987 1.15586 0.91308 0.92540 0.95268 0.91521 0.93683 0.93425 0.92561 0.87628 0.96044 0.89256 0.93825 0.85341 0.85284 0.85268 0.83094 0.90767 0.95306 0.80362 0.92616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.23 9.11 37.15 0.34 -1.89 16 2 C -0.09 -1.38 2.67 -90.62 -0.24 -1.62 16 3 C -0.14 -1.82 9.19 37.16 0.34 -1.48 16 4 C 0.04 0.66 3.86 -3.82 -0.01 0.65 16 5 N -0.52 -8.81 3.52 -236.08 -0.83 -9.64 16 6 C 0.10 1.43 5.21 -4.98 -0.03 1.40 16 7 C 0.16 2.17 4.63 -82.59 -0.38 1.79 16 8 C -0.16 -1.88 7.07 -39.44 -0.28 -2.16 16 9 C -0.08 -0.80 10.06 -39.27 -0.40 -1.19 16 10 C -0.18 -1.80 10.11 -39.44 -0.40 -2.20 16 11 C 0.10 1.17 11.18 -17.55 -0.20 0.97 16 12 N -0.46 -6.89 10.27 -9.48 -0.10 -6.98 16 13 C 0.04 0.82 4.69 -3.83 -0.02 0.81 16 14 C 0.21 4.69 2.44 -27.88 -0.07 4.62 16 15 H 0.07 1.61 7.05 -51.93 -0.37 1.25 16 16 O -0.57 -12.41 8.69 -35.23 -0.31 -12.72 16 17 C -0.56 -15.37 9.28 -34.44 -0.32 -15.69 16 18 H 0.07 2.07 7.99 -52.48 -0.42 1.65 16 19 C 0.09 2.52 5.47 -17.82 -0.10 2.42 16 20 N -0.89 -27.18 13.96 55.43 0.77 -26.40 16 21 Si 0.88 22.22 26.90 -169.99 -4.57 17.64 16 22 H -0.29 -7.28 7.11 56.52 0.40 -6.87 16 23 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16 24 H -0.23 -5.82 5.88 56.52 0.33 -5.49 16 25 H 0.07 1.33 7.47 -51.93 -0.39 0.95 16 26 H 0.06 1.04 8.14 -51.92 -0.42 0.61 16 27 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.07 0.98 3.87 -51.93 -0.20 0.77 16 29 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 31 H 0.06 0.74 8.14 -51.92 -0.42 0.32 16 32 H 0.11 1.79 4.58 -51.93 -0.24 1.55 16 33 H 0.02 0.30 7.59 -51.93 -0.39 -0.09 16 34 H 0.09 1.35 7.79 -51.93 -0.40 0.95 16 35 H 0.04 0.57 7.73 -51.93 -0.40 0.17 16 36 H 0.13 1.31 8.04 -52.49 -0.42 0.89 16 37 H 0.13 0.94 8.06 -52.49 -0.42 0.51 16 38 H 0.13 0.91 8.06 -52.48 -0.42 0.49 16 39 H 0.15 1.42 8.06 -52.49 -0.42 1.00 16 40 H 0.07 1.45 7.71 -51.93 -0.40 1.05 16 41 H 0.03 0.53 8.01 -51.93 -0.42 0.12 16 42 H 0.35 6.71 8.57 45.56 0.39 7.10 16 43 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 LS Contribution 338.01 15.07 5.09 5.09 Total: -1.00 -31.31 338.01 -7.94 -39.25 By element: Atomic # 1 Polarization: 13.58 SS G_CDS: -6.25 Total: 7.33 kcal Atomic # 6 Polarization: -11.82 SS G_CDS: -1.76 Total: -13.58 kcal Atomic # 7 Polarization: -42.88 SS G_CDS: -0.15 Total: -43.03 kcal Atomic # 8 Polarization: -12.41 SS G_CDS: -0.31 Total: -12.72 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -4.57 Total: 17.64 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -31.31 -7.94 -39.25 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932449576.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.549 kcal (2) G-P(sol) polarization free energy of solvation -31.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.253 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds