Wall clock time and date at job start Tue Mar 31 2020 00:16:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52997 * 109.47117 * 2 1 4 4 C 1.53001 * 109.47706 * 120.00347 * 2 1 3 5 5 N 1.46900 * 109.46888 * 60.36033 * 4 2 1 6 6 C 1.46897 * 111.00037 * 88.95386 * 5 4 2 7 7 C 1.50699 * 109.47287 * 291.86284 * 6 5 4 8 8 C 1.38228 * 119.61875 * 95.91563 * 7 6 5 9 9 C 1.38628 * 119.16302 * 179.79140 * 8 7 6 10 10 C 1.38679 * 118.41412 * 0.47805 * 9 8 7 11 11 C 1.38172 * 119.16857 * 359.50467 * 10 9 8 12 12 N 1.31853 * 119.61670 * 275.94471 * 7 6 5 13 13 C 1.46901 * 110.99759 * 212.90865 * 5 4 2 14 14 C 1.52996 * 109.47331 * 74.67953 * 13 5 4 15 15 H 1.09001 * 109.47344 * 52.52798 * 14 13 5 16 16 O 1.42896 * 109.47306 * 292.53139 * 14 13 5 17 17 C 1.50706 * 109.47419 * 172.53199 * 14 13 5 18 18 H 1.08003 * 119.99488 * 5.59661 * 17 14 13 19 19 C 1.37872 * 120.00149 * 185.60728 * 17 14 13 20 20 N 1.31519 * 120.00021 * 186.61059 * 19 17 14 21 21 Si 1.86802 * 120.00026 * 6.60149 * 19 17 14 22 22 H 1.48507 * 109.46806 * 94.88406 * 21 19 17 23 23 H 1.48503 * 109.47018 * 214.88033 * 21 19 17 24 24 H 1.48496 * 109.47229 * 334.88055 * 21 19 17 25 25 H 1.09006 * 109.47312 * 184.81218 * 1 2 3 26 26 H 1.09007 * 109.47255 * 304.80406 * 1 2 3 27 27 H 1.09001 * 109.47720 * 64.80950 * 1 2 3 28 28 H 1.08999 * 109.47015 * 240.00472 * 2 1 3 29 29 H 1.09003 * 109.47411 * 180.02562 * 3 2 1 30 30 H 1.09006 * 109.47597 * 300.00717 * 3 2 1 31 31 H 1.09011 * 109.47128 * 60.00353 * 3 2 1 32 32 H 1.09000 * 109.46856 * 300.36399 * 4 2 1 33 33 H 1.08992 * 109.47262 * 180.36442 * 4 2 1 34 34 H 1.09003 * 109.47296 * 171.86614 * 6 5 4 35 35 H 1.08997 * 109.46951 * 51.86037 * 6 5 4 36 36 H 1.07999 * 120.41655 * 0.02562 * 8 7 6 37 37 H 1.07992 * 120.79145 * 180.23228 * 9 8 7 38 38 H 1.08004 * 120.41290 * 179.78260 * 10 9 8 39 39 H 1.07998 * 119.61930 * 180.25592 * 11 10 9 40 40 H 1.09002 * 109.47008 * 194.67523 * 13 5 4 41 41 H 1.09003 * 109.47329 * 314.67749 * 13 5 4 42 42 H 0.96700 * 114.00040 * 301.51288 * 16 14 13 43 43 H 0.96992 * 119.99997 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 7 1.5576 -2.1088 1.2447 6 6 2.4965 -2.9904 0.5382 7 6 2.4945 -2.6527 -0.9304 8 6 3.4557 -1.7977 -1.4361 9 6 3.4477 -1.4969 -2.7894 10 6 2.4625 -2.0620 -3.5851 11 6 1.5345 -2.9082 -3.0089 12 7 1.5754 -3.1756 -1.7181 13 6 1.3150 -2.5861 2.6127 14 6 0.0286 -1.9573 3.1517 15 1 -0.7834 -2.1286 2.4450 16 8 0.2213 -0.5519 3.3241 17 6 -0.3191 -2.5830 4.4779 18 1 0.3597 -3.2860 4.9378 19 6 -1.5038 -2.2583 5.1039 20 7 -1.7491 -2.7011 6.3178 21 14 -2.7605 -1.1891 4.2281 22 1 -3.7620 -2.0539 3.5538 23 1 -3.4446 -0.3181 5.2173 24 1 -2.0740 -0.3456 3.2170 25 1 -0.3634 -1.0241 0.0862 26 1 -0.3634 0.5866 0.8439 27 1 -0.3634 0.4374 -0.9299 28 1 1.8932 -0.5138 -0.8900 29 1 3.1300 1.4425 -0.0005 30 1 1.6765 1.9564 -0.8899 31 1 1.6766 1.9563 0.8901 32 1 1.6715 -0.2113 2.1392 33 1 3.1300 -0.7156 1.2524 34 1 2.1917 -4.0283 0.6727 35 1 3.4994 -2.8510 0.9417 36 1 4.2059 -1.3725 -0.7859 37 1 4.1885 -0.8351 -3.2130 38 1 2.4238 -1.8469 -4.6428 39 1 0.7667 -3.3555 -3.6226 40 1 1.2138 -3.6714 2.6062 41 1 2.1526 -2.3031 3.2502 42 1 0.9453 -0.3248 3.9236 43 1 -2.5823 -2.4723 6.7583 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932449576.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:16:58 Heat of formation + Delta-G solvation = -31.436337 kcal Electronic energy + Delta-G solvation = -22919.900328 eV Core-core repulsion = 19771.325988 eV Total energy + Delta-G solvation = -3148.574340 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.33715 -39.42265 -37.18093 -35.35445 -34.42934 -33.28183 -32.68559 -30.50986 -27.87439 -27.84782 -27.19169 -24.52858 -24.17482 -22.39205 -22.01518 -20.81603 -19.32617 -17.67382 -17.31942 -16.87648 -16.78414 -16.51034 -16.09781 -15.98332 -15.38154 -15.08730 -14.76365 -14.68657 -14.52071 -14.13923 -14.01658 -13.60359 -13.48361 -13.12733 -12.99858 -12.81220 -12.76193 -12.57802 -12.35540 -12.25818 -11.78386 -11.68488 -11.48321 -11.42091 -11.13362 -10.80358 -10.64627 -10.26525 -10.08466 -9.63044 -9.05958 -8.35513 -6.47471 0.24657 0.49032 1.37220 1.41057 1.67099 2.40963 2.78158 3.02105 3.29209 3.44141 3.90211 4.01427 4.10021 4.10391 4.18062 4.25180 4.33151 4.35872 4.42933 4.48740 4.59836 4.64321 4.74284 4.84460 4.87369 4.94356 4.95360 5.01189 5.13828 5.18678 5.22274 5.29461 5.34488 5.35325 5.47738 5.54640 5.61658 5.69077 5.88466 6.09506 6.28465 6.37294 6.65802 7.23016 7.23657 7.36847 8.79176 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.024167 B = 0.005181 C = 0.004947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1158.338528 B = 5402.739986 C = 5658.691934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.088 4.088 3 C -0.138 4.138 4 C 0.045 3.955 5 N -0.533 5.533 6 C 0.099 3.901 7 C 0.133 3.867 8 C -0.164 4.164 9 C -0.077 4.077 10 C -0.173 4.173 11 C 0.080 3.920 12 N -0.505 5.505 13 C 0.056 3.944 14 C 0.219 3.781 15 H 0.045 0.955 16 O -0.573 6.573 17 C -0.561 4.561 18 H 0.039 0.961 19 C 0.037 3.963 20 N -0.937 5.937 21 Si 0.940 3.060 22 H -0.287 1.287 23 H -0.291 1.291 24 H -0.228 1.228 25 H 0.038 0.962 26 H 0.037 0.963 27 H 0.040 0.960 28 H 0.074 0.926 29 H 0.065 0.935 30 H 0.057 0.943 31 H 0.047 0.953 32 H 0.090 0.910 33 H 0.042 0.958 34 H 0.073 0.927 35 H 0.062 0.938 36 H 0.144 0.856 37 H 0.163 0.837 38 H 0.162 0.838 39 H 0.166 0.834 40 H 0.063 0.937 41 H 0.036 0.964 42 H 0.364 0.636 43 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.903 6.125 -20.421 24.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.107 4.107 3 C -0.196 4.196 4 C -0.082 4.082 5 N -0.256 5.256 6 C -0.029 4.029 7 C -0.005 4.005 8 C -0.185 4.185 9 C -0.103 4.103 10 C -0.192 4.192 11 C -0.077 4.077 12 N -0.215 5.215 13 C -0.072 4.072 14 C 0.161 3.839 15 H 0.063 0.937 16 O -0.380 6.380 17 C -0.599 4.599 18 H 0.057 0.943 19 C -0.163 4.163 20 N -0.577 5.577 21 Si 0.764 3.236 22 H -0.213 1.213 23 H -0.218 1.218 24 H -0.151 1.151 25 H 0.057 0.943 26 H 0.056 0.944 27 H 0.059 0.941 28 H 0.092 0.908 29 H 0.084 0.916 30 H 0.076 0.924 31 H 0.066 0.934 32 H 0.108 0.892 33 H 0.060 0.940 34 H 0.092 0.908 35 H 0.080 0.920 36 H 0.162 0.838 37 H 0.181 0.819 38 H 0.180 0.820 39 H 0.183 0.817 40 H 0.081 0.919 41 H 0.054 0.946 42 H 0.211 0.789 43 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 11.232 5.561 -20.587 24.102 hybrid contribution 0.702 0.324 0.855 1.153 sum 11.935 5.885 -19.732 23.800 Atomic orbital electron populations 1.21535 0.96586 1.00705 0.99313 1.21250 0.95187 0.96066 0.98204 1.21746 1.01138 0.95142 1.01562 1.22631 0.96806 0.88239 1.00567 1.61783 1.45664 1.02548 1.15645 1.21068 0.95223 0.97654 0.88981 1.21023 0.90840 0.93443 0.95236 1.22080 1.00218 0.98893 0.97270 1.21910 0.98016 0.97560 0.92815 1.22439 0.95873 0.98242 1.02695 1.23132 0.98331 0.95665 0.90549 1.67433 1.23113 1.24579 1.06382 1.22473 0.97671 0.99380 0.87633 1.19384 0.93370 0.78772 0.92396 0.93694 1.86550 1.57084 1.25895 1.68452 1.21870 1.05227 1.26901 1.05908 0.94251 1.25726 0.99997 0.95963 0.94660 1.70074 1.25978 1.47366 1.14287 0.85829 0.78372 0.79612 0.79739 1.21317 1.21782 1.15067 0.94282 0.94395 0.94099 0.90824 0.91637 0.92441 0.93351 0.89160 0.93992 0.90818 0.92037 0.83843 0.81927 0.82037 0.81707 0.91881 0.94593 0.78862 0.92454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.10 9.11 71.98 0.66 -3.44 16 2 C -0.09 -2.41 2.67 -10.80 -0.03 -2.44 16 3 C -0.14 -3.04 9.19 71.98 0.66 -2.38 16 4 C 0.04 1.31 3.86 86.30 0.33 1.64 16 5 N -0.53 -17.73 3.52 -900.81 -3.17 -20.90 16 6 C 0.10 2.84 5.21 85.56 0.45 3.29 16 7 C 0.13 3.51 4.63 42.55 0.20 3.71 16 8 C -0.16 -3.27 7.07 22.36 0.16 -3.11 16 9 C -0.08 -1.20 10.06 22.47 0.23 -0.97 16 10 C -0.17 -2.76 10.11 22.36 0.23 -2.54 16 11 C 0.08 1.74 11.18 84.67 0.95 2.69 16 12 N -0.51 -14.63 10.27 -183.89 -1.89 -16.52 16 13 C 0.06 2.18 4.69 86.30 0.40 2.59 16 14 C 0.22 10.12 2.44 29.85 0.07 10.19 16 15 H 0.05 2.28 7.05 -2.39 -0.02 2.26 16 16 O -0.57 -24.45 8.69 -148.98 -1.29 -25.74 16 17 C -0.56 -31.49 9.28 25.60 0.24 -31.25 16 18 H 0.04 2.41 7.99 -2.91 -0.02 2.38 16 19 C 0.04 2.13 5.47 84.65 0.46 2.60 16 20 N -0.94 -58.48 13.96 21.45 0.30 -58.18 16 21 Si 0.94 46.78 26.90 68.60 1.85 48.63 16 22 H -0.29 -14.18 7.11 99.48 0.71 -13.47 16 23 H -0.29 -14.33 7.11 99.48 0.71 -13.62 16 24 H -0.23 -11.07 5.88 99.48 0.59 -10.48 16 25 H 0.04 1.51 7.47 -2.38 -0.02 1.49 16 26 H 0.04 1.36 8.14 -2.38 -0.02 1.34 16 27 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 28 H 0.07 1.95 3.87 -2.39 -0.01 1.94 16 29 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 30 H 0.06 1.16 8.14 -2.38 -0.02 1.14 16 31 H 0.05 1.14 8.14 -2.38 -0.02 1.12 16 32 H 0.09 2.93 4.58 -2.39 -0.01 2.92 16 33 H 0.04 1.05 7.59 -2.39 -0.02 1.04 16 34 H 0.07 2.29 7.79 -2.39 -0.02 2.27 16 35 H 0.06 1.51 7.73 -2.39 -0.02 1.49 16 36 H 0.14 2.35 8.04 -2.91 -0.02 2.32 16 37 H 0.16 1.43 8.06 -2.91 -0.02 1.40 16 38 H 0.16 1.49 8.06 -2.91 -0.02 1.47 16 39 H 0.17 2.86 8.06 -2.91 -0.02 2.84 16 40 H 0.06 2.55 7.71 -2.39 -0.02 2.53 16 41 H 0.04 1.32 8.01 -2.39 -0.02 1.30 16 42 H 0.36 13.62 8.57 -74.06 -0.63 12.99 16 43 H 0.27 15.65 8.31 -92.71 -0.77 14.88 16 Total: -1.00 -69.28 338.01 1.02 -68.25 By element: Atomic # 1 Polarization: 23.66 SS G_CDS: 0.23 Total: 23.89 kcal Atomic # 6 Polarization: -24.43 SS G_CDS: 5.00 Total: -19.43 kcal Atomic # 7 Polarization: -90.84 SS G_CDS: -4.76 Total: -95.60 kcal Atomic # 8 Polarization: -24.45 SS G_CDS: -1.29 Total: -25.74 kcal Atomic # 14 Polarization: 46.78 SS G_CDS: 1.85 Total: 48.63 kcal Total: -69.28 1.02 -68.25 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932449576.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.815 kcal (2) G-P(sol) polarization free energy of solvation -69.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.252 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds