Wall clock time and date at job start Tue Mar 31 2020 00:04:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52988 * 109.47285 * 2 1 4 4 C 1.53003 * 109.47285 * 179.97438 * 3 2 1 5 5 H 1.08996 * 115.54910 * 29.27237 * 4 3 2 6 6 C 1.53002 * 117.49544 * 243.60866 * 4 3 2 7 7 C 1.52999 * 117.50173 * 174.98516 * 4 3 2 8 8 H 1.09006 * 117.49958 * 0.02562 * 7 4 3 9 9 C 1.50696 * 117.50040 * 214.97976 * 7 4 3 10 10 O 1.21284 * 119.99777 * 359.97438 * 9 7 4 11 11 N 1.34776 * 119.99918 * 180.02562 * 9 7 4 12 12 C 1.46503 * 119.99984 * 179.97438 * 11 9 7 13 13 H 1.09007 * 115.51182 * 9.41820 * 12 11 9 14 14 C 1.52996 * 117.44462 * 223.99965 * 12 11 9 15 15 H 1.09002 * 119.54049 * 4.11951 * 14 12 11 16 16 C 1.54387 * 118.12363 * 160.81088 * 14 12 11 17 17 N 1.48138 * 104.62034 * 87.18903 * 16 14 12 18 18 C 1.36941 * 127.84077 * 140.41051 * 17 16 14 19 19 H 1.08003 * 119.99402 * 344.38208 * 18 17 16 20 20 C 1.38814 * 120.00430 * 164.38151 * 18 17 16 21 21 N 1.31621 * 119.99555 * 350.81655 * 20 18 17 22 22 Si 1.86794 * 120.00150 * 170.82050 * 20 18 17 23 23 H 1.48496 * 109.47614 * 94.81180 * 22 20 18 24 24 H 1.48501 * 109.47081 * 214.81393 * 22 20 18 25 25 H 1.48506 * 109.46976 * 334.80815 * 22 20 18 26 26 C 1.48008 * 104.32186 * 320.46326 * 17 16 14 27 27 C 1.53001 * 117.44396 * 154.82879 * 12 11 9 28 28 H 1.09000 * 119.53967 * 355.88100 * 27 12 11 29 29 H 1.08996 * 109.47231 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.46876 * 300.00360 * 1 2 3 31 31 H 1.09003 * 109.47157 * 60.00086 * 1 2 3 32 32 H 1.09002 * 109.46876 * 239.99640 * 2 1 3 33 33 H 1.09003 * 109.46656 * 120.00078 * 2 1 3 34 34 H 1.09003 * 109.47337 * 299.99660 * 3 2 1 35 35 H 1.09002 * 109.47458 * 59.99996 * 3 2 1 36 36 H 1.08994 * 117.50228 * 359.97438 * 6 4 3 37 37 H 1.09002 * 117.49437 * 145.02419 * 6 4 3 38 38 H 0.97000 * 120.00418 * 359.97438 * 11 9 7 39 39 H 1.09000 * 110.40882 * 205.98037 * 16 14 12 40 40 H 1.09006 * 110.40487 * 328.40305 * 16 14 12 41 41 H 0.97001 * 119.99513 * 180.02562 * 21 20 18 42 42 H 1.08996 * 110.42012 * 280.73757 * 26 17 16 43 43 H 1.09005 * 110.37019 * 158.31991 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5701 1.4424 0.0006 5 1 4.0403 0.5845 -0.4799 6 6 4.2759 2.0458 1.2166 7 6 4.2766 2.7943 -0.1179 8 1 3.6514 3.6838 -0.1959 9 6 5.5697 2.8382 -0.8905 10 8 6.0126 1.8254 -1.3895 11 7 6.2345 4.0027 -1.0259 12 6 7.4919 4.0454 -1.7765 13 1 7.7413 3.1380 -2.3267 14 6 8.6484 4.8427 -1.1702 15 1 8.5326 5.2919 -0.1838 16 6 10.0778 4.5492 -1.6744 17 7 10.2446 5.4258 -2.8569 18 6 11.3578 6.1308 -3.2297 19 1 12.1575 6.2911 -2.5218 20 6 11.4584 6.6393 -4.5174 21 7 10.5762 6.2952 -5.4316 22 14 12.8458 7.8118 -4.9529 23 1 13.9734 7.0470 -5.5433 24 1 12.3580 8.8125 -5.9357 25 1 13.3087 8.5083 -3.7257 26 6 8.9345 5.3679 -3.5432 27 6 7.8949 5.3823 -2.4019 28 1 7.2176 6.2336 -2.3333 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 1.6768 1.9562 -0.8900 35 1 1.6767 1.9563 0.8900 36 1 3.6504 2.4432 2.0158 37 1 5.2109 1.5852 1.5356 38 1 5.8805 4.8127 -0.6265 39 1 10.8105 4.8015 -0.9078 40 1 10.1721 3.5018 -1.9614 41 1 10.6467 6.6502 -6.3315 42 1 8.8494 4.4490 -4.1233 43 1 8.8045 6.2381 -4.1867 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000961724451.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:04:08 Heat of formation + Delta-G solvation = 30.396220 kcal Electronic energy + Delta-G solvation = -20899.880053 eV Core-core repulsion = 17753.986974 eV Total energy + Delta-G solvation = -3145.893079 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.11248 -38.70156 -37.15032 -34.44891 -34.11127 -32.59888 -30.27958 -27.83146 -27.14221 -25.86339 -24.26008 -22.27854 -21.56278 -20.75628 -20.46932 -19.75624 -19.26393 -17.27534 -16.86321 -16.26840 -15.51714 -15.11485 -14.79338 -14.60544 -14.31714 -13.66582 -13.60880 -13.25859 -13.01677 -12.75261 -12.51867 -12.30221 -12.20274 -11.62792 -11.53555 -11.50299 -11.31860 -11.11733 -10.99026 -10.83733 -10.47255 -10.37908 -10.24253 -10.18960 -10.15441 -9.77533 -9.71415 -9.18460 -8.73327 -8.31980 -6.86847 -5.80090 -3.14283 2.48859 3.07760 3.38118 3.43506 3.45721 3.63493 4.30406 4.33328 4.46991 4.52646 4.60024 4.78908 4.86031 4.96491 5.00926 5.17307 5.23479 5.38196 5.38662 5.42416 5.45662 5.50932 5.55382 5.58565 5.72943 5.76148 5.83838 5.91520 5.93073 5.96855 6.13544 6.16043 6.25110 6.53504 6.69824 6.82521 6.90468 7.35019 7.52881 7.61562 7.71182 8.20378 8.31977 9.10752 9.73399 10.50574 11.34407 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.053694 B = 0.002596 C = 0.002544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 521.351636 B =10783.493469 C =11003.308012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.123 4.123 3 C -0.090 4.090 4 C -0.118 4.118 5 H 0.119 0.881 6 C -0.149 4.149 7 C -0.190 4.190 8 H 0.122 0.878 9 C 0.544 3.456 10 O -0.540 6.540 11 N -0.694 5.694 12 C 0.096 3.904 13 H 0.131 0.869 14 C -0.185 4.185 15 H 0.102 0.898 16 C 0.155 3.845 17 N -0.593 5.593 18 C -0.227 4.227 19 H 0.077 0.923 20 C -0.007 4.007 21 N -0.915 5.915 22 Si 0.914 3.086 23 H -0.288 1.288 24 H -0.289 1.289 25 H -0.280 1.280 26 C 0.186 3.814 27 C -0.179 4.179 28 H 0.102 0.898 29 H 0.053 0.947 30 H 0.053 0.947 31 H 0.054 0.946 32 H 0.064 0.936 33 H 0.063 0.937 34 H 0.068 0.932 35 H 0.064 0.936 36 H 0.103 0.897 37 H 0.099 0.901 38 H 0.399 0.601 39 H 0.051 0.949 40 H 0.027 0.973 41 H 0.255 0.745 42 H 0.026 0.974 43 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.344 -7.071 13.135 23.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.160 4.160 3 C -0.127 4.127 4 C -0.136 4.136 5 H 0.137 0.863 6 C -0.186 4.186 7 C -0.211 4.211 8 H 0.140 0.860 9 C 0.330 3.670 10 O -0.417 6.417 11 N -0.341 5.341 12 C -0.010 4.010 13 H 0.149 0.851 14 C -0.206 4.206 15 H 0.120 0.880 16 C 0.029 3.971 17 N -0.316 5.316 18 C -0.355 4.355 19 H 0.095 0.905 20 C -0.204 4.204 21 N -0.561 5.561 22 Si 0.743 3.257 23 H -0.215 1.215 24 H -0.216 1.216 25 H -0.205 1.205 26 C 0.060 3.940 27 C -0.200 4.200 28 H 0.120 0.880 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.083 0.917 33 H 0.082 0.918 34 H 0.087 0.913 35 H 0.083 0.917 36 H 0.121 0.879 37 H 0.118 0.882 38 H 0.233 0.767 39 H 0.070 0.930 40 H 0.045 0.955 41 H 0.065 0.935 42 H 0.044 0.956 43 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -17.877 -7.661 12.553 23.148 hybrid contribution 0.487 1.277 -0.019 1.367 sum -17.390 -6.384 12.534 22.366 Atomic orbital electron populations 1.21783 0.95899 1.01631 1.01750 1.21504 0.95615 0.96504 1.02417 1.21246 0.91926 0.97396 1.02180 1.22457 0.94628 0.95513 1.01030 0.86347 1.23105 1.03152 1.02133 0.90252 1.22298 0.97786 0.98905 1.02098 0.85993 1.19611 0.84460 0.83166 0.79741 1.90698 1.68599 1.33903 1.48471 1.45317 1.23504 1.10622 1.54705 1.21853 0.83396 0.97732 0.97970 0.85140 1.24347 0.93905 1.05028 0.97358 0.87978 1.21117 0.91217 0.93987 0.90807 1.45150 1.09687 1.51620 1.25189 1.18995 0.95462 1.26065 0.94969 0.90523 1.24916 0.98896 1.01281 0.95269 1.69905 1.37083 1.46379 1.02739 0.86087 0.81231 0.80413 0.77923 1.21479 1.21568 1.20516 1.21021 0.81326 1.01375 0.90320 1.24673 1.01303 0.95382 0.98687 0.87989 0.92753 0.92835 0.92722 0.91703 0.91815 0.91345 0.91684 0.87888 0.88232 0.76709 0.93004 0.95483 0.93532 0.95608 0.89080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.92 9.91 37.16 0.37 -0.55 16 2 C -0.12 -0.85 5.89 -26.74 -0.16 -1.01 16 3 C -0.09 -0.66 5.50 -26.74 -0.15 -0.81 16 4 C -0.12 -1.11 5.25 -90.62 -0.48 -1.59 16 5 H 0.12 1.36 7.60 -51.93 -0.39 0.96 16 6 C -0.15 -1.28 9.88 -26.73 -0.26 -1.54 16 7 C -0.19 -1.91 5.91 -91.77 -0.54 -2.46 16 8 H 0.12 0.96 8.14 -51.93 -0.42 0.54 16 9 C 0.54 7.82 7.61 -10.99 -0.08 7.74 16 10 O -0.54 -10.01 15.82 5.55 0.09 -9.92 16 11 N -0.69 -9.59 5.56 -53.80 -0.30 -9.89 16 12 C 0.10 1.67 5.98 -67.93 -0.41 1.27 16 13 H 0.13 2.59 7.40 -51.93 -0.38 2.20 16 14 C -0.18 -3.36 7.05 -89.30 -0.63 -3.99 16 15 H 0.10 1.66 8.14 -51.93 -0.42 1.24 16 16 C 0.16 3.35 7.04 -2.41 -0.02 3.33 16 17 N -0.59 -15.40 3.38 -168.97 -0.57 -15.97 16 18 C -0.23 -6.36 10.35 -15.06 -0.16 -6.51 16 19 H 0.08 2.07 7.85 -52.48 -0.41 1.66 16 20 C -0.01 -0.18 5.40 -17.43 -0.09 -0.28 16 21 N -0.91 -26.96 10.87 55.49 0.60 -26.36 16 22 Si 0.91 21.98 29.56 -169.99 -5.03 16.95 16 23 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 24 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 25 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 26 C 0.19 4.53 5.69 -2.48 -0.01 4.51 16 27 C -0.18 -3.42 7.05 -89.29 -0.63 -4.05 16 28 H 0.10 1.77 8.14 -51.93 -0.42 1.35 16 29 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 33 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.06 0.41 7.87 -51.93 -0.41 0.00 16 36 H 0.10 0.66 8.03 -51.93 -0.42 0.25 16 37 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 38 H 0.40 4.32 8.83 -40.82 -0.36 3.96 16 39 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 40 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 42 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.09 2.45 6.52 -51.93 -0.34 2.11 16 LS Contribution 353.29 15.07 5.32 5.32 Total: -1.00 -32.02 353.29 -10.47 -42.50 By element: Atomic # 1 Polarization: 10.65 SS G_CDS: -7.35 Total: 3.30 kcal Atomic # 6 Polarization: -2.69 SS G_CDS: -3.25 Total: -5.94 kcal Atomic # 7 Polarization: -51.95 SS G_CDS: -0.27 Total: -52.21 kcal Atomic # 8 Polarization: -10.01 SS G_CDS: 0.09 Total: -9.92 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.03 Total: 16.95 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -32.02 -10.47 -42.50 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000961724451.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.892 kcal (2) G-P(sol) polarization free energy of solvation -32.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.496 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds