Wall clock time and date at job start Tue Mar 31 2020 00:04:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52988 * 109.47285 * 2 1 4 4 C 1.53003 * 109.47285 * 179.97438 * 3 2 1 5 5 H 1.08996 * 115.54910 * 29.27237 * 4 3 2 6 6 C 1.53002 * 117.49544 * 243.60866 * 4 3 2 7 7 C 1.52999 * 117.50173 * 174.98516 * 4 3 2 8 8 H 1.09006 * 117.49958 * 0.02562 * 7 4 3 9 9 C 1.50696 * 117.50040 * 214.97976 * 7 4 3 10 10 O 1.21284 * 119.99777 * 359.97438 * 9 7 4 11 11 N 1.34776 * 119.99918 * 180.02562 * 9 7 4 12 12 C 1.46503 * 119.99984 * 179.97438 * 11 9 7 13 13 H 1.09007 * 115.51182 * 9.41820 * 12 11 9 14 14 C 1.52996 * 117.44462 * 223.99965 * 12 11 9 15 15 H 1.09002 * 119.54049 * 4.11951 * 14 12 11 16 16 C 1.54387 * 118.12363 * 160.81088 * 14 12 11 17 17 N 1.48138 * 104.62034 * 87.18903 * 16 14 12 18 18 C 1.36941 * 127.84077 * 140.41051 * 17 16 14 19 19 H 1.08003 * 119.99402 * 344.38208 * 18 17 16 20 20 C 1.38814 * 120.00430 * 164.38151 * 18 17 16 21 21 N 1.31621 * 119.99555 * 350.81655 * 20 18 17 22 22 Si 1.86794 * 120.00150 * 170.82050 * 20 18 17 23 23 H 1.48496 * 109.47614 * 94.81180 * 22 20 18 24 24 H 1.48501 * 109.47081 * 214.81393 * 22 20 18 25 25 H 1.48506 * 109.46976 * 334.80815 * 22 20 18 26 26 C 1.48008 * 104.32186 * 320.46326 * 17 16 14 27 27 C 1.53001 * 117.44396 * 154.82879 * 12 11 9 28 28 H 1.09000 * 119.53967 * 355.88100 * 27 12 11 29 29 H 1.08996 * 109.47231 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.46876 * 300.00360 * 1 2 3 31 31 H 1.09003 * 109.47157 * 60.00086 * 1 2 3 32 32 H 1.09002 * 109.46876 * 239.99640 * 2 1 3 33 33 H 1.09003 * 109.46656 * 120.00078 * 2 1 3 34 34 H 1.09003 * 109.47337 * 299.99660 * 3 2 1 35 35 H 1.09002 * 109.47458 * 59.99996 * 3 2 1 36 36 H 1.08994 * 117.50228 * 359.97438 * 6 4 3 37 37 H 1.09002 * 117.49437 * 145.02419 * 6 4 3 38 38 H 0.97000 * 120.00418 * 359.97438 * 11 9 7 39 39 H 1.09000 * 110.40882 * 205.98037 * 16 14 12 40 40 H 1.09006 * 110.40487 * 328.40305 * 16 14 12 41 41 H 0.97001 * 119.99513 * 180.02562 * 21 20 18 42 42 H 1.08996 * 110.42012 * 280.73757 * 26 17 16 43 43 H 1.09005 * 110.37019 * 158.31991 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5701 1.4424 0.0006 5 1 4.0403 0.5845 -0.4799 6 6 4.2759 2.0458 1.2166 7 6 4.2766 2.7943 -0.1179 8 1 3.6514 3.6838 -0.1959 9 6 5.5697 2.8382 -0.8905 10 8 6.0126 1.8254 -1.3895 11 7 6.2345 4.0027 -1.0259 12 6 7.4919 4.0454 -1.7765 13 1 7.7413 3.1380 -2.3267 14 6 8.6484 4.8427 -1.1702 15 1 8.5326 5.2919 -0.1838 16 6 10.0778 4.5492 -1.6744 17 7 10.2446 5.4258 -2.8569 18 6 11.3578 6.1308 -3.2297 19 1 12.1575 6.2911 -2.5218 20 6 11.4584 6.6393 -4.5174 21 7 10.5762 6.2952 -5.4316 22 14 12.8458 7.8118 -4.9529 23 1 13.9734 7.0470 -5.5433 24 1 12.3580 8.8125 -5.9357 25 1 13.3087 8.5083 -3.7257 26 6 8.9345 5.3679 -3.5432 27 6 7.8949 5.3823 -2.4019 28 1 7.2176 6.2336 -2.3333 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 1.6768 1.9562 -0.8900 35 1 1.6767 1.9563 0.8900 36 1 3.6504 2.4432 2.0158 37 1 5.2109 1.5852 1.5356 38 1 5.8805 4.8127 -0.6265 39 1 10.8105 4.8015 -0.9078 40 1 10.1721 3.5018 -1.9614 41 1 10.6467 6.6502 -6.3315 42 1 8.8494 4.4490 -4.1233 43 1 8.8045 6.2381 -4.1867 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000961724451.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:04:07 Heat of formation + Delta-G solvation = 11.175560 kcal Electronic energy + Delta-G solvation = -20900.713524 eV Core-core repulsion = 17753.986974 eV Total energy + Delta-G solvation = -3146.726549 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.31921 -40.14351 -38.09505 -36.08984 -34.73543 -34.29913 -32.13289 -28.95867 -28.49303 -27.66066 -25.42835 -23.28883 -22.75007 -21.98877 -21.50921 -20.96155 -20.84138 -18.89368 -18.28480 -17.66695 -16.76005 -16.20995 -16.02540 -15.80323 -15.53084 -15.15567 -14.94878 -14.67493 -14.18732 -13.82875 -13.70943 -13.37273 -13.30812 -13.09389 -12.93422 -12.87864 -12.73813 -12.19589 -12.13847 -12.05838 -11.92530 -11.89322 -11.69608 -11.65868 -11.19932 -11.02562 -10.92353 -10.80102 -10.67308 -9.73601 -8.95115 -7.93785 -5.31100 1.39494 1.46264 1.47760 1.58042 1.91914 2.47312 2.73970 2.93031 3.26416 3.51148 3.63054 3.74604 3.80457 3.87345 3.91880 4.10168 4.17428 4.23328 4.31853 4.35409 4.40375 4.48281 4.66922 4.78236 4.85189 4.90325 4.90657 4.95462 4.96829 5.02092 5.09862 5.23617 5.25342 5.38181 5.39339 5.42558 5.43671 5.51795 5.54659 5.61425 6.14267 6.52053 6.97980 7.21432 7.64745 8.43247 9.20374 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.053694 B = 0.002596 C = 0.002544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 521.351636 B =10783.493469 C =11003.308012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.125 4.125 3 C -0.083 4.083 4 C -0.125 4.125 5 H 0.089 0.911 6 C -0.131 4.131 7 C -0.191 4.191 8 H 0.154 0.846 9 C 0.538 3.462 10 O -0.589 6.589 11 N -0.679 5.679 12 C 0.115 3.885 13 H 0.101 0.899 14 C -0.166 4.166 15 H 0.137 0.863 16 C 0.148 3.852 17 N -0.617 5.617 18 C -0.242 4.242 19 H 0.084 0.916 20 C -0.065 4.065 21 N -0.949 5.949 22 Si 0.984 3.016 23 H -0.287 1.287 24 H -0.292 1.292 25 H -0.265 1.265 26 C 0.189 3.811 27 C -0.177 4.177 28 H 0.129 0.871 29 H 0.055 0.945 30 H 0.062 0.938 31 H 0.053 0.947 32 H 0.050 0.950 33 H 0.065 0.935 34 H 0.067 0.933 35 H 0.085 0.915 36 H 0.136 0.864 37 H 0.086 0.914 38 H 0.419 0.581 39 H 0.065 0.935 40 H 0.016 0.984 41 H 0.251 0.749 42 H -0.007 1.007 43 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.865 -5.840 15.815 26.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.162 4.162 3 C -0.120 4.120 4 C -0.143 4.143 5 H 0.108 0.892 6 C -0.169 4.169 7 C -0.212 4.212 8 H 0.172 0.828 9 C 0.327 3.673 10 O -0.470 6.470 11 N -0.328 5.328 12 C 0.007 3.993 13 H 0.119 0.881 14 C -0.187 4.187 15 H 0.155 0.845 16 C 0.022 3.978 17 N -0.341 5.341 18 C -0.370 4.370 19 H 0.102 0.898 20 C -0.258 4.258 21 N -0.597 5.597 22 Si 0.812 3.188 23 H -0.214 1.214 24 H -0.218 1.218 25 H -0.189 1.189 26 C 0.063 3.937 27 C -0.198 4.198 28 H 0.146 0.854 29 H 0.074 0.926 30 H 0.081 0.919 31 H 0.072 0.928 32 H 0.069 0.931 33 H 0.084 0.916 34 H 0.086 0.914 35 H 0.104 0.896 36 H 0.154 0.846 37 H 0.105 0.895 38 H 0.257 0.743 39 H 0.083 0.917 40 H 0.034 0.966 41 H 0.060 0.940 42 H 0.011 0.989 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -19.423 -6.419 15.286 25.537 hybrid contribution 0.978 0.766 -0.860 1.511 sum -18.445 -5.653 14.426 24.089 Atomic orbital electron populations 1.21767 0.94969 1.01956 1.02180 1.21508 0.96403 0.96425 1.01877 1.21227 0.90060 0.97618 1.03106 1.22464 0.95982 0.94214 1.01676 0.89245 1.23222 1.02834 1.00601 0.90208 1.22328 0.95719 1.00503 1.02602 0.82793 1.20446 0.85454 0.82242 0.79115 1.90687 1.70084 1.35660 1.50537 1.45135 1.22007 1.11688 1.53979 1.21365 0.84942 0.95528 0.97436 0.88137 1.24254 0.91695 1.04613 0.98148 0.84531 1.21254 0.94007 0.92706 0.89832 1.45461 1.09836 1.52335 1.26443 1.19413 0.96305 1.25943 0.95349 0.89850 1.25816 1.01609 1.03176 0.95239 1.70110 1.39019 1.47701 1.02830 0.84991 0.78001 0.78027 0.77822 1.21385 1.21790 1.18940 1.20753 0.82973 0.98331 0.91655 1.24351 1.01264 0.97455 0.96759 0.85351 0.92567 0.91869 0.92783 0.93088 0.91648 0.91422 0.89616 0.84579 0.89506 0.74317 0.91670 0.96620 0.94043 0.98865 0.92155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.53 9.91 71.98 0.71 -0.82 16 2 C -0.12 -1.56 5.89 30.59 0.18 -1.38 16 3 C -0.08 -1.01 5.50 30.59 0.17 -0.84 16 4 C -0.12 -2.15 5.25 -10.79 -0.06 -2.21 16 5 H 0.09 2.09 7.60 -2.39 -0.02 2.08 16 6 C -0.13 -1.86 9.88 30.60 0.30 -1.56 16 7 C -0.19 -3.33 5.91 -11.54 -0.07 -3.40 16 8 H 0.15 1.73 8.14 -2.38 -0.02 1.71 16 9 C 0.54 14.82 7.61 87.66 0.67 15.49 16 10 O -0.59 -22.25 15.82 -3.04 -0.05 -22.30 16 11 N -0.68 -17.27 5.56 -442.53 -2.46 -19.73 16 12 C 0.11 3.90 5.98 44.99 0.27 4.16 16 13 H 0.10 4.13 7.40 -2.38 -0.02 4.11 16 14 C -0.17 -5.74 7.05 -9.94 -0.07 -5.81 16 15 H 0.14 3.86 8.14 -2.39 -0.02 3.84 16 16 C 0.15 6.35 7.04 86.54 0.61 6.96 16 17 N -0.62 -32.63 3.38 -688.51 -2.32 -34.96 16 18 C -0.24 -13.70 10.35 84.03 0.87 -12.83 16 19 H 0.08 4.49 7.85 -2.91 -0.02 4.47 16 20 C -0.06 -3.72 5.40 84.86 0.46 -3.26 16 21 N -0.95 -57.89 10.87 21.65 0.24 -57.65 16 22 Si 0.98 45.69 29.56 68.60 2.03 47.72 16 23 H -0.29 -13.18 7.11 99.48 0.71 -12.48 16 24 H -0.29 -13.51 7.11 99.48 0.71 -12.81 16 25 H -0.26 -11.54 7.11 99.48 0.71 -10.83 16 26 C 0.19 9.56 5.69 86.56 0.49 10.05 16 27 C -0.18 -6.64 7.05 -9.93 -0.07 -6.71 16 28 H 0.13 4.16 8.14 -2.39 -0.02 4.14 16 29 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 30 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 31 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 32 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 33 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 34 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 35 H 0.09 0.72 7.87 -2.39 -0.02 0.70 16 36 H 0.14 1.07 8.03 -2.39 -0.02 1.05 16 37 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 38 H 0.42 7.47 8.83 -92.71 -0.82 6.65 16 39 H 0.06 2.60 8.14 -2.39 -0.02 2.58 16 40 H 0.02 0.72 8.14 -2.38 -0.02 0.70 16 41 H 0.25 14.74 8.31 -92.71 -0.77 13.97 16 42 H -0.01 -0.36 8.14 -2.39 -0.02 -0.38 16 43 H 0.06 3.40 6.52 -2.38 -0.02 3.38 16 Total: -1.00 -72.89 353.29 2.06 -70.83 By element: Atomic # 1 Polarization: 18.08 SS G_CDS: 0.17 Total: 18.25 kcal Atomic # 6 Polarization: -6.62 SS G_CDS: 4.47 Total: -2.16 kcal Atomic # 7 Polarization: -107.79 SS G_CDS: -4.55 Total: -112.34 kcal Atomic # 8 Polarization: -22.25 SS G_CDS: -0.05 Total: -22.30 kcal Atomic # 14 Polarization: 45.69 SS G_CDS: 2.03 Total: 47.72 kcal Total: -72.89 2.06 -70.83 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000961724451.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.002 kcal (2) G-P(sol) polarization free energy of solvation -72.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.827 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds