Wall clock time and date at job start Tue Mar 31 2020 00:39:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.32985 * 120.00405 * 2 1 4 4 C 1.47103 * 120.00301 * 172.48838 * 3 2 1 5 5 O 1.21617 * 119.99937 * 352.69927 * 4 3 2 6 6 N 1.34784 * 120.00372 * 172.68961 * 4 3 2 7 7 C 1.47024 * 125.64380 * 0.02939 * 6 4 3 8 8 C 1.54320 * 107.26812 * 178.90413 * 7 6 4 9 9 C 1.55161 * 103.10187 * 337.72033 * 8 7 6 10 10 H 1.08999 * 111.00298 * 277.51680 * 9 8 7 11 11 N 1.46501 * 111.00316 * 153.66712 * 9 8 7 12 12 C 1.46501 * 120.00117 * 299.99720 * 11 9 8 13 13 C 1.36937 * 120.00404 * 120.00200 * 11 9 8 14 14 H 1.08001 * 119.99665 * 31.37127 * 13 11 9 15 15 C 1.38810 * 120.00331 * 211.37657 * 13 11 9 16 16 N 1.31617 * 119.99713 * 6.77033 * 15 13 11 17 17 Si 1.86799 * 120.00166 * 186.76510 * 15 13 11 18 18 H 1.48508 * 109.46916 * 60.00248 * 17 15 13 19 19 H 1.48497 * 109.47104 * 179.97438 * 17 15 13 20 20 H 1.48501 * 109.47444 * 300.00129 * 17 15 13 21 21 C 1.47418 * 125.64763 * 179.97438 * 6 4 3 22 22 C 1.50706 * 119.99897 * 180.02562 * 2 1 3 23 23 C 1.52999 * 117.49642 * 359.95878 * 22 2 1 24 24 C 1.52992 * 59.99902 * 252.50933 * 23 22 2 25 25 H 1.08995 * 109.47377 * 89.99287 * 1 2 3 26 26 H 1.08994 * 109.47407 * 210.00093 * 1 2 3 27 27 H 1.09003 * 109.46529 * 329.99755 * 1 2 3 28 28 H 1.08003 * 120.00368 * 352.49713 * 3 2 1 29 29 H 1.08998 * 109.87963 * 59.49231 * 7 6 4 30 30 H 1.08998 * 110.01446 * 298.39244 * 7 6 4 31 31 H 1.08995 * 110.72347 * 96.16728 * 8 7 6 32 32 H 1.08998 * 110.72059 * 219.27238 * 8 7 6 33 33 H 1.09000 * 109.46807 * 85.10237 * 12 11 9 34 34 H 1.09001 * 109.47258 * 205.10550 * 12 11 9 35 35 H 1.09001 * 109.46957 * 325.10662 * 12 11 9 36 36 H 0.97004 * 119.99961 * 179.97438 * 16 15 13 37 37 H 1.09002 * 110.37208 * 323.00408 * 21 6 4 38 38 H 1.09000 * 110.36716 * 85.32695 * 21 6 4 39 39 H 1.08996 * 115.55250 * 145.66426 * 22 2 1 40 40 H 1.09009 * 117.50019 * 0.02562 * 23 22 2 41 41 H 1.09007 * 117.50048 * 145.01430 * 23 22 2 42 42 H 1.09005 * 117.49741 * 252.50555 * 24 23 22 43 43 H 1.09006 * 117.49755 * 107.49512 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1720 1.1516 0.0000 4 6 3.6336 1.1571 0.1665 5 8 4.2187 0.1256 0.4364 6 7 4.3244 2.3051 0.0199 7 6 3.7462 3.6175 -0.3039 8 6 4.9076 4.6330 -0.3419 9 6 6.0015 3.9485 0.5197 10 1 5.8287 4.1234 1.5816 11 7 7.3386 4.3997 0.1262 12 6 7.8122 4.1807 -1.2428 13 6 8.1458 5.0262 1.0378 14 1 8.0787 4.7694 2.0847 15 6 9.0503 5.9912 0.6165 16 7 9.0410 6.4003 -0.6345 17 14 10.2804 6.7095 1.8250 18 1 11.1390 5.6232 2.3617 19 1 11.1277 7.7125 1.1314 20 1 9.5528 7.3632 2.9423 21 6 5.7845 2.4529 0.1588 22 6 2.2605 -1.3052 -0.0006 23 6 1.4383 -2.5955 -0.0002 24 6 2.1860 -2.1644 1.2631 25 1 -0.3634 0.0001 -1.0276 26 1 -0.3634 -0.8899 0.5138 27 1 -0.3632 0.8900 0.5139 28 1 1.6390 2.0830 -0.1221 29 1 3.0272 3.9053 0.4630 30 1 3.2554 3.5793 -1.2764 31 1 5.2577 4.7805 -1.3635 32 1 4.6051 5.5816 0.1015 33 1 7.4658 4.9933 -1.8814 34 1 8.9018 4.1521 -1.2501 35 1 7.4213 3.2339 -1.6153 36 1 9.6728 7.0749 -0.9288 37 1 6.1564 1.8123 0.9585 38 1 6.2812 2.2141 -0.7816 39 1 3.1988 -1.3061 -0.5552 40 1 0.3524 -2.5004 0.0001 41 1 1.8356 -3.4456 -0.5549 42 1 3.0752 -2.7310 1.5396 43 1 1.5921 -1.7858 2.0950 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000971144596.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:39:47 Heat of formation + Delta-G solvation = 36.123250 kcal Electronic energy + Delta-G solvation = -21795.406787 eV Core-core repulsion = 18649.762051 eV Total energy + Delta-G solvation = -3145.644736 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.88018 -38.24564 -36.92971 -34.72858 -33.45688 -31.59133 -29.78536 -28.66695 -27.35636 -26.03582 -24.16933 -22.81381 -22.38191 -22.15942 -19.90072 -19.22858 -17.99208 -17.03190 -16.98068 -15.91110 -15.76409 -14.99113 -14.62561 -14.20801 -13.77760 -13.50981 -13.33218 -13.27813 -13.14299 -12.62328 -12.51506 -12.42894 -12.21069 -11.83647 -11.60819 -11.37125 -11.26795 -10.95067 -10.82663 -10.79104 -10.48621 -10.43721 -10.36606 -10.22894 -9.96283 -9.83022 -9.33489 -8.95067 -8.55843 -8.19055 -6.68991 -5.80385 -3.32875 1.33613 3.33894 3.36809 3.41840 3.43418 3.45376 3.91708 4.44921 4.46682 4.63724 4.89369 4.94907 5.04437 5.10977 5.21718 5.31056 5.33024 5.39119 5.44636 5.50454 5.59001 5.60563 5.66897 5.80822 5.83384 5.96303 6.04180 6.08234 6.18433 6.28259 6.34064 6.44959 6.48597 6.64808 6.74789 6.85500 6.94101 7.31328 7.65528 7.77278 7.90746 8.40286 8.50305 9.19063 9.78808 10.32437 11.25881 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.037914 B = 0.003358 C = 0.003251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 738.341389 B = 8335.166518 C = 8611.676143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.014 4.014 3 C -0.215 4.215 4 C 0.555 3.445 5 O -0.544 6.544 6 N -0.610 5.610 7 C 0.103 3.897 8 C -0.152 4.152 9 C 0.173 3.827 10 H 0.077 0.923 11 N -0.583 5.583 12 C 0.158 3.842 13 C -0.265 4.265 14 H 0.066 0.934 15 C 0.011 3.989 16 N -0.903 5.903 17 Si 0.907 3.093 18 H -0.282 1.282 19 H -0.290 1.290 20 H -0.282 1.282 21 C 0.085 3.915 22 C -0.112 4.112 23 C -0.192 4.192 24 C -0.154 4.154 25 H 0.077 0.923 26 H 0.072 0.928 27 H 0.071 0.929 28 H 0.126 0.874 29 H 0.061 0.939 30 H 0.060 0.940 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.021 0.979 34 H 0.053 0.947 35 H -0.001 1.001 36 H 0.255 0.745 37 H 0.071 0.929 38 H 0.069 0.931 39 H 0.130 0.870 40 H 0.094 0.906 41 H 0.094 0.906 42 H 0.096 0.904 43 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.203 -10.715 -0.475 20.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.016 4.016 3 C -0.235 4.235 4 C 0.347 3.653 5 O -0.424 6.424 6 N -0.343 5.343 7 C -0.020 4.020 8 C -0.192 4.192 9 C 0.063 3.937 10 H 0.095 0.905 11 N -0.303 5.303 12 C 0.014 3.986 13 C -0.394 4.394 14 H 0.083 0.917 15 C -0.188 4.188 16 N -0.546 5.546 17 Si 0.736 3.264 18 H -0.209 1.209 19 H -0.216 1.216 20 H -0.208 1.208 21 C -0.039 4.039 22 C -0.130 4.130 23 C -0.229 4.229 24 C -0.191 4.191 25 H 0.096 0.904 26 H 0.091 0.909 27 H 0.090 0.910 28 H 0.144 0.856 29 H 0.080 0.920 30 H 0.078 0.922 31 H 0.094 0.906 32 H 0.093 0.907 33 H 0.040 0.960 34 H 0.072 0.928 35 H 0.017 0.983 36 H 0.065 0.935 37 H 0.089 0.911 38 H 0.087 0.913 39 H 0.147 0.853 40 H 0.113 0.887 41 H 0.112 0.888 42 H 0.114 0.886 43 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -16.759 -11.160 -0.427 20.140 hybrid contribution 0.641 0.761 0.448 1.092 sum -16.118 -10.398 0.021 19.181 Atomic orbital electron populations 1.20984 0.91251 1.03140 1.02867 1.21758 0.95060 0.93360 0.91415 1.22413 0.93617 0.98499 1.09016 1.18154 0.87363 0.82193 0.77613 1.90739 1.71289 1.31025 1.49374 1.48374 1.09004 1.07954 1.68968 1.22049 0.97214 0.83171 0.99572 1.23215 0.95478 0.97617 1.02910 1.21531 0.85776 0.89298 0.97141 0.90489 1.43697 1.10137 1.66957 1.09533 1.20794 0.98799 0.94087 0.84949 1.19134 1.15375 1.14885 0.90042 0.91657 1.25224 1.00640 0.96510 0.96467 1.70008 1.37743 1.31715 1.15168 0.86317 0.80968 0.78710 0.80389 1.20861 1.21574 1.20769 1.22957 0.78782 1.00355 1.01781 1.21359 1.00349 0.87918 1.03336 1.23142 0.98763 0.98621 1.02406 1.22776 1.02403 1.02616 0.91351 0.90438 0.90889 0.91040 0.85604 0.92037 0.92214 0.90636 0.90650 0.96042 0.92844 0.98263 0.93518 0.91101 0.91296 0.85257 0.88747 0.88777 0.88559 0.89175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.97 9.53 36.01 0.34 -0.62 16 2 C -0.01 -0.16 5.80 -101.17 -0.59 -0.75 16 3 C -0.21 -2.73 9.12 -37.81 -0.34 -3.07 16 4 C 0.56 9.19 7.69 -12.66 -0.10 9.09 16 5 O -0.54 -10.42 13.68 5.26 0.07 -10.35 16 6 N -0.61 -10.16 3.33 -171.62 -0.57 -10.73 16 7 C 0.10 1.47 6.08 -3.07 -0.02 1.45 16 8 C -0.15 -2.63 6.53 -24.90 -0.16 -2.79 16 9 C 0.17 3.52 3.56 -65.53 -0.23 3.29 16 10 H 0.08 1.59 7.96 -51.93 -0.41 1.18 16 11 N -0.58 -14.34 2.94 -170.74 -0.50 -14.84 16 12 C 0.16 3.82 8.05 59.85 0.48 4.30 16 13 C -0.26 -7.16 9.53 -15.06 -0.14 -7.31 16 14 H 0.07 1.74 7.84 -52.49 -0.41 1.32 16 15 C 0.01 0.30 5.14 -17.43 -0.09 0.21 16 16 N -0.90 -25.78 10.98 55.49 0.61 -25.17 16 17 Si 0.91 21.50 29.56 -169.99 -5.02 16.47 16 18 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 19 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 20 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 21 C 0.09 1.63 6.48 -2.28 -0.01 1.61 16 22 C -0.11 -1.37 4.24 -91.77 -0.39 -1.76 16 23 C -0.19 -1.81 9.80 -26.74 -0.26 -2.07 16 24 C -0.15 -1.71 10.23 -26.74 -0.27 -1.99 16 25 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.07 0.49 6.30 -51.93 -0.33 0.17 16 27 H 0.07 0.48 8.07 -51.93 -0.42 0.06 16 28 H 0.13 1.31 7.39 -52.48 -0.39 0.93 16 29 H 0.06 0.76 8.12 -51.93 -0.42 0.34 16 30 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.07 1.40 7.17 -51.93 -0.37 1.03 16 32 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 33 H 0.02 0.54 7.53 -51.93 -0.39 0.15 16 34 H 0.05 1.40 7.09 -51.93 -0.37 1.03 16 35 H 0.00 -0.02 5.95 -51.93 -0.31 -0.33 16 36 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 37 H 0.07 1.43 8.04 -51.93 -0.42 1.01 16 38 H 0.07 1.38 5.94 -51.93 -0.31 1.07 16 39 H 0.13 1.93 6.43 -51.93 -0.33 1.60 16 40 H 0.09 0.73 6.27 -51.92 -0.33 0.40 16 41 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16 42 H 0.10 1.10 8.14 -51.93 -0.42 0.67 16 43 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 LS Contribution 340.84 15.07 5.14 5.14 Total: -1.00 -30.35 340.84 -8.95 -39.30 By element: Atomic # 1 Polarization: 7.47 SS G_CDS: -6.88 Total: 0.59 kcal Atomic # 6 Polarization: 1.39 SS G_CDS: -1.79 Total: -0.41 kcal Atomic # 7 Polarization: -50.29 SS G_CDS: -0.46 Total: -50.75 kcal Atomic # 8 Polarization: -10.42 SS G_CDS: 0.07 Total: -10.35 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -30.35 -8.95 -39.30 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000971144596.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.420 kcal (2) G-P(sol) polarization free energy of solvation -30.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.297 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds