Wall clock time and date at job start Tue Mar 31 2020 00:39:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.32985 * 120.00405 * 2 1 4 4 C 1.47103 * 120.00301 * 172.48838 * 3 2 1 5 5 O 1.21617 * 119.99937 * 352.69927 * 4 3 2 6 6 N 1.34784 * 120.00372 * 172.68961 * 4 3 2 7 7 C 1.47024 * 125.64380 * 0.02939 * 6 4 3 8 8 C 1.54320 * 107.26812 * 178.90413 * 7 6 4 9 9 C 1.55161 * 103.10187 * 337.72033 * 8 7 6 10 10 H 1.08999 * 111.00298 * 277.51680 * 9 8 7 11 11 N 1.46501 * 111.00316 * 153.66712 * 9 8 7 12 12 C 1.46501 * 120.00117 * 299.99720 * 11 9 8 13 13 C 1.36937 * 120.00404 * 120.00200 * 11 9 8 14 14 H 1.08001 * 119.99665 * 31.37127 * 13 11 9 15 15 C 1.38810 * 120.00331 * 211.37657 * 13 11 9 16 16 N 1.31617 * 119.99713 * 6.77033 * 15 13 11 17 17 Si 1.86799 * 120.00166 * 186.76510 * 15 13 11 18 18 H 1.48508 * 109.46916 * 60.00248 * 17 15 13 19 19 H 1.48497 * 109.47104 * 179.97438 * 17 15 13 20 20 H 1.48501 * 109.47444 * 300.00129 * 17 15 13 21 21 C 1.47418 * 125.64763 * 179.97438 * 6 4 3 22 22 C 1.50706 * 119.99897 * 180.02562 * 2 1 3 23 23 C 1.52999 * 117.49642 * 359.95878 * 22 2 1 24 24 C 1.52992 * 59.99902 * 252.50933 * 23 22 2 25 25 H 1.08995 * 109.47377 * 89.99287 * 1 2 3 26 26 H 1.08994 * 109.47407 * 210.00093 * 1 2 3 27 27 H 1.09003 * 109.46529 * 329.99755 * 1 2 3 28 28 H 1.08003 * 120.00368 * 352.49713 * 3 2 1 29 29 H 1.08998 * 109.87963 * 59.49231 * 7 6 4 30 30 H 1.08998 * 110.01446 * 298.39244 * 7 6 4 31 31 H 1.08995 * 110.72347 * 96.16728 * 8 7 6 32 32 H 1.08998 * 110.72059 * 219.27238 * 8 7 6 33 33 H 1.09000 * 109.46807 * 85.10237 * 12 11 9 34 34 H 1.09001 * 109.47258 * 205.10550 * 12 11 9 35 35 H 1.09001 * 109.46957 * 325.10662 * 12 11 9 36 36 H 0.97004 * 119.99961 * 179.97438 * 16 15 13 37 37 H 1.09002 * 110.37208 * 323.00408 * 21 6 4 38 38 H 1.09000 * 110.36716 * 85.32695 * 21 6 4 39 39 H 1.08996 * 115.55250 * 145.66426 * 22 2 1 40 40 H 1.09009 * 117.50019 * 0.02562 * 23 22 2 41 41 H 1.09007 * 117.50048 * 145.01430 * 23 22 2 42 42 H 1.09005 * 117.49741 * 252.50555 * 24 23 22 43 43 H 1.09006 * 117.49755 * 107.49512 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1720 1.1516 0.0000 4 6 3.6336 1.1571 0.1665 5 8 4.2187 0.1256 0.4364 6 7 4.3244 2.3051 0.0199 7 6 3.7462 3.6175 -0.3039 8 6 4.9076 4.6330 -0.3419 9 6 6.0015 3.9485 0.5197 10 1 5.8287 4.1234 1.5816 11 7 7.3386 4.3997 0.1262 12 6 7.8122 4.1807 -1.2428 13 6 8.1458 5.0262 1.0378 14 1 8.0787 4.7694 2.0847 15 6 9.0503 5.9912 0.6165 16 7 9.0410 6.4003 -0.6345 17 14 10.2804 6.7095 1.8250 18 1 11.1390 5.6232 2.3617 19 1 11.1277 7.7125 1.1314 20 1 9.5528 7.3632 2.9423 21 6 5.7845 2.4529 0.1588 22 6 2.2605 -1.3052 -0.0006 23 6 1.4383 -2.5955 -0.0002 24 6 2.1860 -2.1644 1.2631 25 1 -0.3634 0.0001 -1.0276 26 1 -0.3634 -0.8899 0.5138 27 1 -0.3632 0.8900 0.5139 28 1 1.6390 2.0830 -0.1221 29 1 3.0272 3.9053 0.4630 30 1 3.2554 3.5793 -1.2764 31 1 5.2577 4.7805 -1.3635 32 1 4.6051 5.5816 0.1015 33 1 7.4658 4.9933 -1.8814 34 1 8.9018 4.1521 -1.2501 35 1 7.4213 3.2339 -1.6153 36 1 9.6728 7.0749 -0.9288 37 1 6.1564 1.8123 0.9585 38 1 6.2812 2.2141 -0.7816 39 1 3.1988 -1.3061 -0.5552 40 1 0.3524 -2.5004 0.0001 41 1 1.8356 -3.4456 -0.5549 42 1 3.0752 -2.7310 1.5396 43 1 1.5921 -1.7858 2.0950 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000971144596.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:39:47 Heat of formation + Delta-G solvation = 19.263817 kcal Electronic energy + Delta-G solvation = -21796.137867 eV Core-core repulsion = 18649.762051 eV Total energy + Delta-G solvation = -3146.375816 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.14397 -39.42502 -38.19752 -36.48972 -34.35002 -33.41827 -31.34727 -29.87041 -28.49501 -28.05656 -25.58346 -24.16949 -23.56644 -23.13884 -21.17802 -20.76613 -19.03103 -18.93725 -18.20232 -17.45383 -16.90555 -16.42079 -16.02797 -15.63568 -15.15268 -14.93067 -14.60630 -14.42412 -14.28162 -14.11133 -13.88639 -13.64445 -13.35806 -13.08936 -12.96979 -12.81705 -12.52377 -12.44837 -12.38018 -12.17937 -12.14331 -12.07627 -11.88381 -11.67225 -11.45695 -11.27900 -10.63772 -10.53494 -9.91885 -9.49616 -8.68743 -7.88387 -5.43503 0.37445 1.47030 1.49031 1.55513 2.05886 2.28373 2.50197 3.06174 3.27079 3.54233 3.59480 3.70025 3.93579 3.99115 4.05380 4.18204 4.20352 4.27125 4.32664 4.43916 4.45355 4.67179 4.68718 4.75729 4.78677 4.84259 4.91106 4.97717 5.01119 5.08115 5.19052 5.20943 5.25320 5.30412 5.32593 5.39691 5.47498 5.62328 5.64531 5.69492 6.34856 6.65010 7.12549 7.23877 7.79861 8.29055 9.16109 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.037914 B = 0.003358 C = 0.003251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 738.341389 B = 8335.166518 C = 8611.676143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.005 3.995 3 C -0.236 4.236 4 C 0.547 3.453 5 O -0.582 6.582 6 N -0.614 5.614 7 C 0.112 3.888 8 C -0.142 4.142 9 C 0.167 3.833 10 H 0.072 0.928 11 N -0.600 5.600 12 C 0.176 3.824 13 C -0.277 4.277 14 H 0.065 0.935 15 C -0.039 4.039 16 N -0.931 5.931 17 Si 0.970 3.030 18 H -0.280 1.280 19 H -0.292 1.292 20 H -0.273 1.273 21 C 0.099 3.901 22 C -0.141 4.141 23 C -0.163 4.163 24 C -0.164 4.164 25 H 0.096 0.904 26 H 0.086 0.914 27 H 0.086 0.914 28 H 0.155 0.845 29 H 0.091 0.909 30 H 0.086 0.914 31 H 0.061 0.939 32 H 0.081 0.919 33 H 0.004 0.996 34 H 0.024 0.976 35 H 0.021 0.979 36 H 0.251 0.749 37 H 0.051 0.949 38 H 0.055 0.945 39 H 0.094 0.906 40 H 0.122 0.878 41 H 0.099 0.901 42 H 0.083 0.917 43 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.385 -11.051 -0.062 23.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.003 3.997 3 C -0.257 4.257 4 C 0.341 3.659 5 O -0.465 6.465 6 N -0.347 5.347 7 C -0.010 4.010 8 C -0.182 4.182 9 C 0.058 3.942 10 H 0.090 0.910 11 N -0.321 5.321 12 C 0.031 3.969 13 C -0.407 4.407 14 H 0.083 0.917 15 C -0.236 4.236 16 N -0.576 5.576 17 Si 0.798 3.202 18 H -0.206 1.206 19 H -0.218 1.218 20 H -0.198 1.198 21 C -0.027 4.027 22 C -0.159 4.159 23 C -0.199 4.199 24 C -0.201 4.201 25 H 0.114 0.886 26 H 0.104 0.896 27 H 0.105 0.895 28 H 0.172 0.828 29 H 0.109 0.891 30 H 0.104 0.896 31 H 0.079 0.921 32 H 0.100 0.900 33 H 0.023 0.977 34 H 0.043 0.957 35 H 0.039 0.961 36 H 0.060 0.940 37 H 0.070 0.930 38 H 0.073 0.927 39 H 0.112 0.888 40 H 0.140 0.860 41 H 0.118 0.882 42 H 0.101 0.899 43 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -19.987 -11.503 -0.006 23.061 hybrid contribution 1.608 0.713 0.328 1.789 sum -18.380 -10.790 0.322 21.315 Atomic orbital electron populations 1.21090 0.87882 1.04607 1.04387 1.22168 0.97168 0.92166 0.88236 1.22403 0.90926 1.00409 1.11919 1.18932 0.89054 0.81313 0.76618 1.90728 1.72412 1.32273 1.51075 1.48446 1.07691 1.09226 1.69348 1.22123 0.96095 0.80718 1.02082 1.23038 0.95420 0.98608 1.01130 1.21615 0.84908 0.90236 0.97460 0.90993 1.43849 1.11911 1.67218 1.09153 1.20504 0.96894 0.94480 0.84991 1.19436 1.16015 1.14787 0.90490 0.91714 1.25943 1.02478 0.97104 0.98048 1.70157 1.38476 1.32273 1.16706 0.85315 0.78693 0.77770 0.78443 1.20595 1.21782 1.19830 1.22560 0.80952 0.98902 1.00246 1.21299 1.00310 0.90137 1.04194 1.23245 0.99855 0.96717 1.00104 1.22817 1.02700 1.02605 0.91964 0.88598 0.89554 0.89490 0.82750 0.89091 0.89595 0.92069 0.90018 0.97725 0.95715 0.96051 0.93963 0.93038 0.92651 0.88847 0.86014 0.88218 0.89870 0.88178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.33 9.53 71.24 0.68 -0.65 16 2 C 0.00 0.09 5.80 -17.62 -0.10 -0.01 16 3 C -0.24 -5.44 9.12 23.43 0.21 -5.23 16 4 C 0.55 17.85 7.69 86.57 0.67 18.52 16 5 O -0.58 -22.99 13.68 -4.09 -0.06 -23.04 16 6 N -0.61 -20.02 3.33 -815.12 -2.71 -22.73 16 7 C 0.11 2.91 6.08 86.73 0.53 3.44 16 8 C -0.14 -4.78 6.53 31.78 0.21 -4.57 16 9 C 0.17 6.85 3.56 46.55 0.17 7.01 16 10 H 0.07 3.00 7.96 -2.39 -0.02 2.98 16 11 N -0.60 -30.22 2.94 -694.10 -2.04 -32.26 16 12 C 0.18 8.78 8.05 127.77 1.03 9.81 16 13 C -0.28 -15.28 9.53 84.03 0.80 -14.48 16 14 H 0.07 3.49 7.84 -2.91 -0.02 3.47 16 15 C -0.04 -2.18 5.14 84.86 0.44 -1.75 16 16 N -0.93 -54.39 10.98 21.65 0.24 -54.15 16 17 Si 0.97 44.70 29.56 68.60 2.03 46.72 16 18 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 19 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16 20 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 21 C 0.10 3.84 6.48 87.02 0.56 4.40 16 22 C -0.14 -3.33 4.24 -11.54 -0.05 -3.38 16 23 C -0.16 -2.64 9.80 30.59 0.30 -2.34 16 24 C -0.16 -3.46 10.23 30.59 0.31 -3.15 16 25 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 26 H 0.09 0.73 6.30 -2.39 -0.02 0.72 16 27 H 0.09 0.74 8.07 -2.39 -0.02 0.72 16 28 H 0.15 2.59 7.39 -2.91 -0.02 2.57 16 29 H 0.09 1.89 8.12 -2.39 -0.02 1.88 16 30 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 31 H 0.06 2.24 7.17 -2.39 -0.02 2.23 16 32 H 0.08 2.64 8.14 -2.39 -0.02 2.62 16 33 H 0.00 0.24 7.53 -2.39 -0.02 0.22 16 34 H 0.02 1.33 7.09 -2.39 -0.02 1.31 16 35 H 0.02 0.95 5.95 -2.39 -0.01 0.93 16 36 H 0.25 14.25 8.31 -92.71 -0.77 13.48 16 37 H 0.05 2.17 8.04 -2.39 -0.02 2.15 16 38 H 0.06 2.28 5.94 -2.39 -0.01 2.27 16 39 H 0.09 2.91 6.43 -2.39 -0.02 2.89 16 40 H 0.12 1.33 6.27 -2.38 -0.01 1.31 16 41 H 0.10 1.51 8.14 -2.38 -0.02 1.49 16 42 H 0.08 1.93 8.14 -2.38 -0.02 1.91 16 43 H 0.10 1.88 8.14 -2.38 -0.02 1.86 16 Total: -1.00 -68.49 340.84 4.19 -64.30 By element: Atomic # 1 Polarization: 12.55 SS G_CDS: 0.99 Total: 13.54 kcal Atomic # 6 Polarization: 1.87 SS G_CDS: 5.75 Total: 7.62 kcal Atomic # 7 Polarization: -104.63 SS G_CDS: -4.51 Total: -109.14 kcal Atomic # 8 Polarization: -22.99 SS G_CDS: -0.06 Total: -23.04 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 2.03 Total: 46.72 kcal Total: -68.49 4.19 -64.30 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000971144596.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.560 kcal (2) G-P(sol) polarization free energy of solvation -68.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.296 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds