Wall clock time and date at job start Tue Mar 31 2020 00:39:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.32997 * 120.00038 * 2 1 4 4 C 1.47100 * 120.00120 * 172.62322 * 3 2 1 5 5 O 1.21607 * 120.00115 * 352.69468 * 4 3 2 6 6 N 1.34783 * 119.99739 * 172.69536 * 4 3 2 7 7 C 1.47419 * 125.64831 * 0.02562 * 6 4 3 8 8 C 1.54916 * 104.83242 * 155.82684 * 7 6 4 9 9 C 1.55159 * 101.57651 * 37.00881 * 8 7 6 10 10 H 1.08998 * 110.71728 * 83.04618 * 9 8 7 11 11 N 1.46511 * 110.71606 * 206.13439 * 9 8 7 12 12 C 1.46496 * 119.99809 * 60.00765 * 11 9 8 13 13 C 1.36928 * 119.99974 * 239.99931 * 11 9 8 14 14 H 1.08005 * 120.00274 * 333.94950 * 13 11 9 15 15 C 1.38816 * 120.00237 * 153.66885 * 13 11 9 16 16 N 1.31622 * 119.99453 * 352.31966 * 15 13 11 17 17 Si 1.86795 * 120.00364 * 172.31195 * 15 13 11 18 18 H 1.48501 * 109.47120 * 60.00054 * 17 15 13 19 19 H 1.48501 * 109.47099 * 180.02562 * 17 15 13 20 20 H 1.48504 * 109.46918 * 300.00533 * 17 15 13 21 21 C 1.47027 * 125.64462 * 179.97438 * 6 4 3 22 22 C 1.50704 * 120.00341 * 179.97438 * 2 1 3 23 23 C 1.52997 * 117.49655 * 0.02562 * 22 2 1 24 24 C 1.53003 * 117.49899 * 291.36371 * 22 2 1 25 25 H 1.09009 * 109.47121 * 90.00580 * 1 2 3 26 26 H 1.09000 * 109.47009 * 209.99818 * 1 2 3 27 27 H 1.08992 * 109.47540 * 330.00570 * 1 2 3 28 28 H 1.07998 * 119.99741 * 352.61841 * 3 2 1 29 29 H 1.08996 * 110.36765 * 36.99158 * 7 6 4 30 30 H 1.08995 * 110.46183 * 274.70935 * 7 6 4 31 31 H 1.09002 * 111.00117 * 278.93652 * 8 7 6 32 32 H 1.08998 * 111.04136 * 155.09849 * 8 7 6 33 33 H 1.09003 * 109.46690 * 273.29619 * 12 11 9 34 34 H 1.08999 * 109.47571 * 33.29483 * 12 11 9 35 35 H 1.09001 * 109.47027 * 153.30211 * 12 11 9 36 36 H 0.97002 * 119.99443 * 180.02562 * 16 15 13 37 37 H 1.08994 * 109.88189 * 61.68687 * 21 6 4 38 38 H 1.09000 * 109.87874 * 300.51866 * 21 6 4 39 39 H 1.08998 * 115.55087 * 145.69328 * 22 2 1 40 40 H 1.08997 * 117.49680 * 359.97438 * 23 22 2 41 41 H 1.08996 * 117.50088 * 145.01990 * 23 22 2 42 42 H 1.09000 * 117.49838 * 214.98021 * 24 22 2 43 43 H 1.08998 * 117.49558 * 359.97438 * 24 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1719 1.1518 0.0000 4 6 3.6338 1.1571 0.1636 5 8 4.2195 0.1254 0.4310 6 7 4.3241 2.3054 0.0170 7 6 3.7436 3.6217 -0.3050 8 6 4.7673 4.6500 0.2378 9 6 6.1132 3.9429 -0.0721 10 1 6.4143 4.1223 -1.1041 11 7 7.1572 4.3866 0.8551 12 6 6.9942 4.1779 2.2959 13 6 8.2854 4.9960 0.3749 14 1 8.6227 4.7927 -0.6308 15 6 8.9926 5.8798 1.1786 16 7 8.5006 6.2487 2.3423 17 14 10.6423 6.5453 0.6086 18 1 10.4639 7.2845 -0.6669 19 1 11.1893 7.4624 1.6406 20 1 11.5854 5.4174 0.3993 21 6 5.7807 2.4528 0.1527 22 6 2.2605 -1.3051 0.0006 23 6 1.4385 -2.5955 0.0006 24 6 2.1857 -2.1635 1.2649 25 1 -0.3634 -0.0001 -1.0277 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3634 0.8899 0.5137 28 1 1.6386 2.0832 -0.1202 29 1 2.7821 3.7444 0.1934 30 1 3.6285 3.7340 -1.3830 31 1 4.6414 4.7977 1.3104 32 1 4.6914 5.5971 -0.2964 33 1 6.4417 5.0145 2.7239 34 1 6.4445 3.2528 2.4693 35 1 7.9750 4.1115 2.7667 36 1 8.9945 6.8665 2.9037 37 1 6.2863 1.8431 -0.5960 38 1 6.0922 2.1501 1.1524 39 1 3.1991 -1.3063 -0.5537 40 1 0.3527 -2.5004 0.0005 41 1 1.8364 -3.4457 -0.5534 42 1 3.0748 -2.7297 1.5421 43 1 1.5917 -1.7841 2.0963 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000971144597.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:39:51 Heat of formation + Delta-G solvation = 39.247056 kcal Electronic energy + Delta-G solvation = -21859.321712 eV Core-core repulsion = 18713.812434 eV Total energy + Delta-G solvation = -3145.509278 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 1.46 seconds Orbital eigenvalues (eV) -39.88502 -38.25751 -36.93637 -34.73057 -33.44817 -31.58219 -29.75481 -28.67926 -27.35313 -26.03202 -24.14877 -22.79286 -22.37039 -22.20311 -19.98474 -19.09805 -18.00288 -17.06585 -16.95966 -16.07458 -15.52769 -15.19096 -14.60648 -14.00874 -13.78241 -13.69144 -13.32936 -13.26868 -13.14324 -12.60496 -12.50021 -12.36881 -12.12788 -11.73987 -11.55979 -11.36341 -11.33607 -10.93138 -10.82703 -10.77212 -10.54993 -10.41024 -10.38006 -10.22778 -9.89480 -9.85249 -9.32429 -8.94618 -8.55082 -8.16329 -6.76273 -5.77868 -3.26167 1.34815 3.34960 3.37475 3.42798 3.44284 3.46212 3.92432 4.45743 4.47505 4.64039 4.89734 4.95671 5.05063 5.11006 5.21442 5.26737 5.32986 5.40211 5.45025 5.50899 5.59695 5.62907 5.67961 5.81540 5.83815 5.94966 6.05249 6.06134 6.19205 6.29082 6.35039 6.45666 6.48807 6.62977 6.76303 6.89465 6.92390 7.37951 7.69413 7.78213 7.91251 8.38377 8.51816 9.20104 9.81097 10.31974 11.28410 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.039046 B = 0.003400 C = 0.003292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 716.925345 B = 8233.715838 C = 8503.797270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.014 4.014 3 C -0.215 4.215 4 C 0.554 3.446 5 O -0.544 6.544 6 N -0.609 5.609 7 C 0.101 3.899 8 C -0.151 4.151 9 C 0.172 3.828 10 H 0.078 0.922 11 N -0.586 5.586 12 C 0.160 3.840 13 C -0.261 4.261 14 H 0.068 0.932 15 C 0.006 3.994 16 N -0.906 5.906 17 Si 0.908 3.092 18 H -0.282 1.282 19 H -0.290 1.290 20 H -0.283 1.283 21 C 0.087 3.913 22 C -0.112 4.112 23 C -0.193 4.193 24 C -0.155 4.155 25 H 0.077 0.923 26 H 0.072 0.928 27 H 0.071 0.929 28 H 0.126 0.874 29 H 0.067 0.933 30 H 0.064 0.936 31 H 0.075 0.925 32 H 0.077 0.923 33 H 0.020 0.980 34 H -0.002 1.002 35 H 0.057 0.943 36 H 0.254 0.746 37 H 0.059 0.941 38 H 0.074 0.926 39 H 0.130 0.870 40 H 0.094 0.906 41 H 0.094 0.906 42 H 0.096 0.904 43 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.612 -10.394 -4.947 20.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.016 4.016 3 C -0.236 4.236 4 C 0.346 3.654 5 O -0.424 6.424 6 N -0.342 5.342 7 C -0.023 4.023 8 C -0.192 4.192 9 C 0.061 3.939 10 H 0.096 0.904 11 N -0.307 5.307 12 C 0.016 3.984 13 C -0.391 4.391 14 H 0.086 0.914 15 C -0.193 4.193 16 N -0.551 5.551 17 Si 0.738 3.262 18 H -0.209 1.209 19 H -0.216 1.216 20 H -0.210 1.210 21 C -0.037 4.037 22 C -0.130 4.130 23 C -0.229 4.229 24 C -0.192 4.192 25 H 0.095 0.905 26 H 0.091 0.909 27 H 0.090 0.910 28 H 0.144 0.856 29 H 0.085 0.915 30 H 0.082 0.918 31 H 0.093 0.907 32 H 0.095 0.905 33 H 0.038 0.962 34 H 0.016 0.984 35 H 0.076 0.924 36 H 0.064 0.936 37 H 0.077 0.923 38 H 0.092 0.908 39 H 0.147 0.853 40 H 0.112 0.888 41 H 0.112 0.888 42 H 0.114 0.886 43 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -16.205 -10.855 -4.631 20.047 hybrid contribution 0.839 0.703 -0.201 1.113 sum -15.366 -10.152 -4.833 19.040 Atomic orbital electron populations 1.20983 0.91254 1.03157 1.02842 1.21757 0.95054 0.93361 0.91454 1.22420 0.93631 0.98489 1.09032 1.18158 0.87374 0.82219 0.77664 1.90737 1.71238 1.31097 1.49315 1.48411 1.08862 1.07973 1.68968 1.22350 0.97449 0.82841 0.99648 1.23372 0.96231 0.97576 1.02014 1.21327 0.88197 0.89260 0.95067 0.90417 1.43823 1.17315 1.67829 1.01698 1.20796 0.99904 0.94189 0.83522 1.19187 1.00937 1.19139 0.99805 0.91403 1.25115 0.99571 0.97180 0.97401 1.70044 1.37910 1.35588 1.11521 0.86289 0.83650 0.78588 0.77696 1.20862 1.21602 1.20950 1.22675 0.78745 1.00094 1.02176 1.21361 1.00331 0.87919 1.03347 1.23152 0.98756 0.98612 1.02419 1.22792 1.02414 1.02610 0.91340 0.90452 0.90888 0.91041 0.85580 0.91463 0.91767 0.90674 0.90467 0.96167 0.98392 0.92441 0.93581 0.92291 0.90831 0.85255 0.88754 0.88788 0.88552 0.89158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.98 9.53 36.00 0.34 -0.63 16 2 C -0.01 -0.16 5.80 -101.17 -0.59 -0.75 16 3 C -0.21 -2.75 9.07 -37.81 -0.34 -3.10 16 4 C 0.55 9.26 7.69 -12.66 -0.10 9.16 16 5 O -0.54 -10.55 13.74 5.27 0.07 -10.47 16 6 N -0.61 -10.18 3.33 -171.92 -0.57 -10.75 16 7 C 0.10 1.41 6.57 -2.53 -0.02 1.39 16 8 C -0.15 -2.60 6.66 -24.58 -0.16 -2.76 16 9 C 0.17 3.45 3.45 -66.09 -0.23 3.22 16 10 H 0.08 1.54 7.94 -51.93 -0.41 1.12 16 11 N -0.59 -14.48 2.93 -171.38 -0.50 -14.98 16 12 C 0.16 3.96 7.92 59.84 0.47 4.44 16 13 C -0.26 -7.06 9.58 -15.06 -0.14 -7.20 16 14 H 0.07 1.78 7.84 -52.48 -0.41 1.37 16 15 C 0.01 0.17 5.15 -17.43 -0.09 0.08 16 16 N -0.91 -26.05 10.68 55.49 0.59 -25.46 16 17 Si 0.91 21.57 29.56 -169.99 -5.02 16.55 16 18 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 19 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 20 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 21 C 0.09 1.67 6.45 -3.06 -0.02 1.65 16 22 C -0.11 -1.38 4.24 -91.77 -0.39 -1.77 16 23 C -0.19 -1.82 9.80 -26.69 -0.26 -2.09 16 24 C -0.15 -1.75 10.24 -26.69 -0.27 -2.02 16 25 H 0.08 0.51 8.14 -51.92 -0.42 0.09 16 26 H 0.07 0.50 6.30 -51.93 -0.33 0.18 16 27 H 0.07 0.49 8.07 -51.93 -0.42 0.07 16 28 H 0.13 1.32 6.82 -52.49 -0.36 0.96 16 29 H 0.07 0.80 7.06 -51.93 -0.37 0.43 16 30 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.07 1.42 7.21 -51.93 -0.37 1.05 16 32 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 33 H 0.02 0.53 7.59 -51.93 -0.39 0.13 16 34 H 0.00 -0.05 6.06 -51.93 -0.31 -0.36 16 35 H 0.06 1.55 6.85 -51.93 -0.36 1.19 16 36 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 37 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 38 H 0.07 1.57 5.90 -51.93 -0.31 1.26 16 39 H 0.13 1.94 6.42 -51.93 -0.33 1.60 16 40 H 0.09 0.73 6.27 -51.93 -0.33 0.41 16 41 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 42 H 0.10 1.12 8.14 -51.93 -0.42 0.70 16 43 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 LS Contribution 339.32 15.07 5.11 5.11 Total: -1.00 -30.68 339.32 -8.91 -39.59 By element: Atomic # 1 Polarization: 7.59 SS G_CDS: -6.79 Total: 0.79 kcal Atomic # 6 Polarization: 1.41 SS G_CDS: -1.80 Total: -0.38 kcal Atomic # 7 Polarization: -50.71 SS G_CDS: -0.48 Total: -51.19 kcal Atomic # 8 Polarization: -10.55 SS G_CDS: 0.07 Total: -10.47 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -30.68 -8.91 -39.59 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000971144597.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.836 kcal (2) G-P(sol) polarization free energy of solvation -30.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.589 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.46 seconds