Wall clock time and date at job start Tue Mar 31 2020 00:39:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.32997 * 120.00038 * 2 1 4 4 C 1.47100 * 120.00120 * 172.62322 * 3 2 1 5 5 O 1.21607 * 120.00115 * 352.69468 * 4 3 2 6 6 N 1.34783 * 119.99739 * 172.69536 * 4 3 2 7 7 C 1.47419 * 125.64831 * 0.02562 * 6 4 3 8 8 C 1.54916 * 104.83242 * 155.82684 * 7 6 4 9 9 C 1.55159 * 101.57651 * 37.00881 * 8 7 6 10 10 H 1.08998 * 110.71728 * 83.04618 * 9 8 7 11 11 N 1.46511 * 110.71606 * 206.13439 * 9 8 7 12 12 C 1.46496 * 119.99809 * 60.00765 * 11 9 8 13 13 C 1.36928 * 119.99974 * 239.99931 * 11 9 8 14 14 H 1.08005 * 120.00274 * 333.94950 * 13 11 9 15 15 C 1.38816 * 120.00237 * 153.66885 * 13 11 9 16 16 N 1.31622 * 119.99453 * 352.31966 * 15 13 11 17 17 Si 1.86795 * 120.00364 * 172.31195 * 15 13 11 18 18 H 1.48501 * 109.47120 * 60.00054 * 17 15 13 19 19 H 1.48501 * 109.47099 * 180.02562 * 17 15 13 20 20 H 1.48504 * 109.46918 * 300.00533 * 17 15 13 21 21 C 1.47027 * 125.64462 * 179.97438 * 6 4 3 22 22 C 1.50704 * 120.00341 * 179.97438 * 2 1 3 23 23 C 1.52997 * 117.49655 * 0.02562 * 22 2 1 24 24 C 1.53003 * 117.49899 * 291.36371 * 22 2 1 25 25 H 1.09009 * 109.47121 * 90.00580 * 1 2 3 26 26 H 1.09000 * 109.47009 * 209.99818 * 1 2 3 27 27 H 1.08992 * 109.47540 * 330.00570 * 1 2 3 28 28 H 1.07998 * 119.99741 * 352.61841 * 3 2 1 29 29 H 1.08996 * 110.36765 * 36.99158 * 7 6 4 30 30 H 1.08995 * 110.46183 * 274.70935 * 7 6 4 31 31 H 1.09002 * 111.00117 * 278.93652 * 8 7 6 32 32 H 1.08998 * 111.04136 * 155.09849 * 8 7 6 33 33 H 1.09003 * 109.46690 * 273.29619 * 12 11 9 34 34 H 1.08999 * 109.47571 * 33.29483 * 12 11 9 35 35 H 1.09001 * 109.47027 * 153.30211 * 12 11 9 36 36 H 0.97002 * 119.99443 * 180.02562 * 16 15 13 37 37 H 1.08994 * 109.88189 * 61.68687 * 21 6 4 38 38 H 1.09000 * 109.87874 * 300.51866 * 21 6 4 39 39 H 1.08998 * 115.55087 * 145.69328 * 22 2 1 40 40 H 1.08997 * 117.49680 * 359.97438 * 23 22 2 41 41 H 1.08996 * 117.50088 * 145.01990 * 23 22 2 42 42 H 1.09000 * 117.49838 * 214.98021 * 24 22 2 43 43 H 1.08998 * 117.49558 * 359.97438 * 24 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1719 1.1518 0.0000 4 6 3.6338 1.1571 0.1636 5 8 4.2195 0.1254 0.4310 6 7 4.3241 2.3054 0.0170 7 6 3.7436 3.6217 -0.3050 8 6 4.7673 4.6500 0.2378 9 6 6.1132 3.9429 -0.0721 10 1 6.4143 4.1223 -1.1041 11 7 7.1572 4.3866 0.8551 12 6 6.9942 4.1779 2.2959 13 6 8.2854 4.9960 0.3749 14 1 8.6227 4.7927 -0.6308 15 6 8.9926 5.8798 1.1786 16 7 8.5006 6.2487 2.3423 17 14 10.6423 6.5453 0.6086 18 1 10.4639 7.2845 -0.6669 19 1 11.1893 7.4624 1.6406 20 1 11.5854 5.4174 0.3993 21 6 5.7807 2.4528 0.1527 22 6 2.2605 -1.3051 0.0006 23 6 1.4385 -2.5955 0.0006 24 6 2.1857 -2.1635 1.2649 25 1 -0.3634 -0.0001 -1.0277 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3634 0.8899 0.5137 28 1 1.6386 2.0832 -0.1202 29 1 2.7821 3.7444 0.1934 30 1 3.6285 3.7340 -1.3830 31 1 4.6414 4.7977 1.3104 32 1 4.6914 5.5971 -0.2964 33 1 6.4417 5.0145 2.7239 34 1 6.4445 3.2528 2.4693 35 1 7.9750 4.1115 2.7667 36 1 8.9945 6.8665 2.9037 37 1 6.2863 1.8431 -0.5960 38 1 6.0922 2.1501 1.1524 39 1 3.1991 -1.3063 -0.5537 40 1 0.3527 -2.5004 0.0005 41 1 1.8364 -3.4457 -0.5534 42 1 3.0748 -2.7297 1.5421 43 1 1.5917 -1.7841 2.0963 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000971144597.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:39:51 Heat of formation + Delta-G solvation = 21.946736 kcal Electronic energy + Delta-G solvation = -21860.071910 eV Core-core repulsion = 18713.812434 eV Total energy + Delta-G solvation = -3146.259476 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.15754 -39.44817 -38.20545 -36.49844 -34.35250 -33.40192 -31.32137 -29.88941 -28.49814 -28.08231 -25.55517 -24.14985 -23.61476 -23.15458 -21.25397 -20.64955 -19.04182 -18.93942 -18.22101 -17.50634 -16.87986 -16.44508 -16.11318 -15.51531 -15.20233 -14.90482 -14.68540 -14.48988 -14.27038 -14.05909 -13.89378 -13.48410 -13.22909 -13.06704 -13.00004 -12.81933 -12.54762 -12.44986 -12.37130 -12.24506 -12.16671 -12.07873 -11.85244 -11.67200 -11.48934 -11.27071 -10.63525 -10.53350 -9.92584 -9.46623 -8.78070 -7.86924 -5.37304 0.37781 1.47417 1.50016 1.56259 2.07317 2.28625 2.50881 3.05630 3.28632 3.54937 3.59923 3.69338 3.86618 4.00198 4.05368 4.17386 4.26402 4.28171 4.33073 4.43433 4.46818 4.65024 4.68102 4.74991 4.78029 4.84136 4.94202 4.97350 5.00289 5.07444 5.17435 5.21544 5.25185 5.30931 5.35678 5.39702 5.47103 5.60899 5.65824 5.69379 6.32265 6.65378 7.11973 7.24645 7.81015 8.28304 9.18386 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.039046 B = 0.003400 C = 0.003292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 716.925345 B = 8233.715838 C = 8503.797270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.004 3.996 3 C -0.236 4.236 4 C 0.545 3.455 5 O -0.583 6.583 6 N -0.614 5.614 7 C 0.110 3.890 8 C -0.142 4.142 9 C 0.165 3.835 10 H 0.082 0.918 11 N -0.603 5.603 12 C 0.182 3.818 13 C -0.272 4.272 14 H 0.073 0.927 15 C -0.047 4.047 16 N -0.937 5.937 17 Si 0.973 3.027 18 H -0.272 1.272 19 H -0.294 1.294 20 H -0.280 1.280 21 C 0.100 3.900 22 C -0.140 4.140 23 C -0.161 4.161 24 C -0.166 4.166 25 H 0.097 0.903 26 H 0.085 0.915 27 H 0.086 0.914 28 H 0.156 0.844 29 H 0.099 0.901 30 H 0.091 0.909 31 H 0.054 0.946 32 H 0.087 0.913 33 H 0.002 0.998 34 H 0.013 0.987 35 H 0.027 0.973 36 H 0.249 0.751 37 H 0.051 0.949 38 H 0.044 0.956 39 H 0.095 0.905 40 H 0.122 0.878 41 H 0.100 0.900 42 H 0.082 0.918 43 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.444 -10.659 -6.459 23.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.002 3.998 3 C -0.257 4.257 4 C 0.339 3.661 5 O -0.466 6.466 6 N -0.347 5.347 7 C -0.012 4.012 8 C -0.183 4.183 9 C 0.057 3.943 10 H 0.100 0.900 11 N -0.324 5.324 12 C 0.037 3.963 13 C -0.401 4.401 14 H 0.091 0.909 15 C -0.243 4.243 16 N -0.583 5.583 17 Si 0.801 3.199 18 H -0.197 1.197 19 H -0.221 1.221 20 H -0.207 1.207 21 C -0.025 4.025 22 C -0.159 4.159 23 C -0.198 4.198 24 C -0.203 4.203 25 H 0.115 0.885 26 H 0.104 0.896 27 H 0.104 0.896 28 H 0.173 0.827 29 H 0.117 0.883 30 H 0.109 0.891 31 H 0.073 0.927 32 H 0.106 0.894 33 H 0.020 0.980 34 H 0.031 0.969 35 H 0.046 0.954 36 H 0.059 0.941 37 H 0.069 0.931 38 H 0.063 0.937 39 H 0.113 0.887 40 H 0.140 0.860 41 H 0.119 0.881 42 H 0.101 0.899 43 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -19.078 -11.125 -6.181 22.933 hybrid contribution 1.699 0.634 0.244 1.830 sum -17.378 -10.492 -5.937 21.150 Atomic orbital electron populations 1.21089 0.87873 1.04555 1.04440 1.22170 0.97172 0.92170 0.88284 1.22414 0.90913 1.00424 1.11926 1.18956 0.89095 0.81389 0.76647 1.90724 1.72390 1.32441 1.51069 1.48499 1.07586 1.09316 1.69270 1.22465 0.97351 0.79943 1.01446 1.23204 0.95193 0.98783 1.01085 1.21488 0.88663 0.89910 0.94265 0.89966 1.43979 1.18369 1.68062 1.02017 1.20437 0.97926 0.94043 0.83925 1.19546 1.01927 1.18711 0.99953 0.90928 1.25876 1.02937 0.97855 0.97618 1.70206 1.39133 1.36351 1.12600 0.85265 0.79563 0.77774 0.77336 1.19710 1.22050 1.20653 1.22284 0.80988 0.99100 1.00169 1.21306 1.00335 0.90140 1.04077 1.23255 0.99846 0.96730 0.99954 1.22829 1.02735 1.02760 0.92004 0.88455 0.89616 0.89565 0.82662 0.88296 0.89071 0.92701 0.89404 0.98018 0.96905 0.95422 0.94134 0.93052 0.93734 0.88741 0.86007 0.88138 0.89926 0.88316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.35 9.53 71.23 0.68 -0.67 16 2 C 0.00 0.08 5.80 -17.62 -0.10 -0.02 16 3 C -0.24 -5.50 9.07 23.43 0.21 -5.29 16 4 C 0.55 18.02 7.69 86.57 0.67 18.69 16 5 O -0.58 -23.42 13.74 -4.05 -0.06 -23.47 16 6 N -0.61 -20.09 3.33 -816.07 -2.71 -22.80 16 7 C 0.11 2.79 6.57 86.86 0.57 3.36 16 8 C -0.14 -4.74 6.66 31.99 0.21 -4.53 16 9 C 0.17 6.66 3.45 46.18 0.16 6.82 16 10 H 0.08 3.22 7.94 -2.39 -0.02 3.20 16 11 N -0.60 -30.46 2.93 -696.13 -2.04 -32.50 16 12 C 0.18 9.35 7.92 127.77 1.01 10.37 16 13 C -0.27 -14.87 9.58 84.04 0.81 -14.06 16 14 H 0.07 3.82 7.84 -2.91 -0.02 3.80 16 15 C -0.05 -2.64 5.15 84.86 0.44 -2.21 16 16 N -0.94 -55.31 10.68 21.65 0.23 -55.08 16 17 Si 0.97 44.83 29.56 68.60 2.03 46.86 16 18 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 19 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 20 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 21 C 0.10 3.90 6.45 86.73 0.56 4.46 16 22 C -0.14 -3.35 4.24 -11.54 -0.05 -3.40 16 23 C -0.16 -2.65 9.80 30.62 0.30 -2.35 16 24 C -0.17 -3.62 10.24 30.62 0.31 -3.31 16 25 H 0.10 0.77 8.14 -2.38 -0.02 0.75 16 26 H 0.09 0.76 6.30 -2.39 -0.02 0.74 16 27 H 0.09 0.76 8.07 -2.39 -0.02 0.74 16 28 H 0.16 2.61 6.82 -2.91 -0.02 2.59 16 29 H 0.10 1.95 7.06 -2.39 -0.02 1.93 16 30 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 31 H 0.05 2.06 7.21 -2.39 -0.02 2.04 16 32 H 0.09 2.73 8.14 -2.39 -0.02 2.71 16 33 H 0.00 0.08 7.59 -2.39 -0.02 0.07 16 34 H 0.01 0.61 6.06 -2.39 -0.01 0.59 16 35 H 0.03 1.55 6.85 -2.39 -0.02 1.53 16 36 H 0.25 14.34 8.31 -92.71 -0.77 13.57 16 37 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 38 H 0.04 1.98 5.90 -2.39 -0.01 1.97 16 39 H 0.09 2.94 6.42 -2.39 -0.02 2.93 16 40 H 0.12 1.35 6.27 -2.39 -0.01 1.34 16 41 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 42 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 43 H 0.10 1.95 8.14 -2.39 -0.02 1.93 16 Total: -1.00 -69.73 339.32 4.22 -65.51 By element: Atomic # 1 Polarization: 12.63 SS G_CDS: 0.99 Total: 13.63 kcal Atomic # 6 Polarization: 2.08 SS G_CDS: 5.78 Total: 7.85 kcal Atomic # 7 Polarization: -105.85 SS G_CDS: -4.52 Total: -110.38 kcal Atomic # 8 Polarization: -23.42 SS G_CDS: -0.06 Total: -23.47 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 2.03 Total: 46.86 kcal Total: -69.73 4.22 -65.51 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000971144597.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.457 kcal (2) G-P(sol) polarization free energy of solvation -69.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.510 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds