Wall clock time and date at job start Tue Mar 31 2020 00:40:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.32996 * 120.00031 * 2 1 4 4 C 1.47101 * 119.99857 * 352.67707 * 3 2 1 5 5 O 1.21618 * 119.99919 * 353.51472 * 4 3 2 6 6 N 1.34777 * 120.00040 * 173.51497 * 4 3 2 7 7 C 1.47023 * 125.64833 * 0.04275 * 6 4 3 8 8 C 1.54320 * 107.27299 * 181.02280 * 7 6 4 9 9 C 1.55153 * 102.94071 * 22.19238 * 8 7 6 10 10 H 1.09007 * 111.03723 * 82.58677 * 9 8 7 11 11 N 1.46502 * 111.00694 * 206.42160 * 9 8 7 12 12 C 1.46509 * 119.99488 * 53.64826 * 11 9 8 13 13 C 1.36936 * 120.00330 * 233.65216 * 11 9 8 14 14 H 1.07997 * 119.99689 * 337.85342 * 13 11 9 15 15 C 1.38815 * 119.99951 * 157.85428 * 13 11 9 16 16 N 1.31626 * 119.99846 * 343.50085 * 15 13 11 17 17 Si 1.86799 * 119.99917 * 163.49549 * 15 13 11 18 18 H 1.48494 * 109.47107 * 0.02562 * 17 15 13 19 19 H 1.48498 * 109.46837 * 120.00167 * 17 15 13 20 20 H 1.48498 * 109.47404 * 240.00093 * 17 15 13 21 21 C 1.47419 * 125.64908 * 180.02562 * 6 4 3 22 22 C 1.50700 * 120.00136 * 179.97438 * 2 1 3 23 23 C 1.53008 * 117.49595 * 8.74760 * 22 2 1 24 24 C 1.52996 * 117.49846 * 300.08868 * 22 2 1 25 25 H 1.08994 * 109.46865 * 84.39065 * 1 2 3 26 26 H 1.09004 * 109.46759 * 204.38954 * 1 2 3 27 27 H 1.08994 * 109.46799 * 324.38629 * 1 2 3 28 28 H 1.07992 * 119.99735 * 172.67802 * 3 2 1 29 29 H 1.08999 * 109.88095 * 300.44521 * 7 6 4 30 30 H 1.09002 * 109.87813 * 61.44504 * 7 6 4 31 31 H 1.08999 * 110.72018 * 263.83283 * 8 7 6 32 32 H 1.08996 * 110.71763 * 140.55392 * 8 7 6 33 33 H 1.08994 * 109.46974 * 267.12284 * 12 11 9 34 34 H 1.08997 * 109.46930 * 27.13069 * 12 11 9 35 35 H 1.09004 * 109.46724 * 147.12543 * 12 11 9 36 36 H 0.96999 * 119.99806 * 179.97438 * 16 15 13 37 37 H 1.09002 * 110.36845 * 37.06403 * 21 6 4 38 38 H 1.09007 * 110.36668 * 274.74670 * 21 6 4 39 39 H 1.08993 * 115.55020 * 154.41551 * 22 2 1 40 40 H 1.08996 * 117.50147 * 359.97438 * 23 22 2 41 41 H 1.09003 * 117.49642 * 145.01950 * 23 22 2 42 42 H 1.09001 * 117.50143 * 214.97436 * 24 22 2 43 43 H 1.09005 * 117.50275 * 359.97432 * 24 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1721 1.1518 0.0000 4 6 1.4455 2.4205 -0.1624 5 8 0.2557 2.4120 -0.4142 6 7 2.0984 3.5924 -0.0321 7 6 3.5291 3.7473 0.2688 8 6 3.8196 5.2609 0.3473 9 6 2.4232 5.8676 0.6461 10 1 2.1934 5.8154 1.7104 11 7 2.3348 7.2467 0.1598 12 6 2.6578 7.5533 -1.2360 13 6 1.9504 8.2492 1.0097 14 1 1.3820 8.0158 1.8978 15 6 2.2915 9.5654 0.7298 16 7 3.2376 9.8279 -0.1468 17 14 1.4075 10.9639 1.5971 18 1 0.3941 10.4069 2.5286 19 1 2.3909 11.7722 2.3619 20 1 0.7354 11.8245 0.5907 21 6 1.4962 4.9311 -0.1681 22 6 2.2606 -1.3051 0.0006 23 6 1.4521 -2.5877 -0.2053 24 6 2.0246 -2.2565 1.1753 25 1 -0.3633 0.1004 -1.0227 26 1 -0.3633 -0.9360 0.4244 27 1 -0.3633 0.8354 0.5984 28 1 3.2454 1.1555 0.1192 29 1 3.7603 3.2754 1.2238 30 1 4.1256 3.2935 -0.5227 31 1 4.2047 5.6295 -0.6034 32 1 4.5158 5.4784 1.1572 33 1 3.7082 7.8340 -1.3126 34 1 2.4702 6.6750 -1.8536 35 1 2.0350 8.3791 -1.5800 36 1 3.4756 10.7476 -0.3427 37 1 0.4890 4.9382 0.2486 38 1 1.4766 5.2337 -1.2151 39 1 3.2637 -1.2689 -0.4241 40 1 0.3752 -2.4876 -0.3407 41 1 1.9236 -3.3954 -0.7650 42 1 2.8724 -2.8467 1.5232 43 1 1.3246 -1.9384 1.9479 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000971144599.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:40:02 Heat of formation + Delta-G solvation = 36.186821 kcal Electronic energy + Delta-G solvation = -21642.047874 eV Core-core repulsion = 18496.405894 eV Total energy + Delta-G solvation = -3145.641980 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -39.90447 -38.38130 -37.27844 -34.79827 -33.20590 -31.64841 -29.81158 -28.44491 -27.26393 -26.05311 -24.56881 -22.95279 -22.66038 -22.21286 -19.64744 -19.24609 -18.02976 -17.08351 -16.96617 -16.12861 -15.75696 -15.15573 -14.64105 -14.38726 -14.09152 -13.47012 -13.39848 -13.03709 -12.91988 -12.62790 -12.45119 -12.34922 -12.11240 -11.88829 -11.67501 -11.48314 -11.23208 -11.13577 -10.97998 -10.77653 -10.72382 -10.49675 -10.47959 -10.22378 -9.88923 -9.83427 -9.36700 -9.02812 -8.58337 -8.20834 -6.81721 -5.78350 -3.22770 1.31762 3.29929 3.36584 3.37180 3.44870 3.47268 3.67726 4.29513 4.47283 4.55123 4.63279 4.78912 4.91586 5.06310 5.12030 5.29452 5.30695 5.39376 5.49231 5.54825 5.57168 5.62422 5.73041 5.77056 5.80216 5.84262 5.93096 6.03346 6.06162 6.32853 6.41496 6.42343 6.47770 6.60813 6.71567 6.78087 6.89913 7.31782 7.65386 7.78272 7.88155 8.33619 8.46486 9.17624 9.80819 10.29413 11.27199 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.042300 B = 0.003165 C = 0.003090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 661.786658 B = 8845.909621 C = 9058.277604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.010 4.010 3 C -0.216 4.216 4 C 0.556 3.444 5 O -0.548 6.548 6 N -0.610 5.610 7 C 0.104 3.896 8 C -0.151 4.151 9 C 0.173 3.827 10 H 0.078 0.922 11 N -0.585 5.585 12 C 0.159 3.841 13 C -0.260 4.260 14 H 0.070 0.930 15 C 0.004 3.996 16 N -0.903 5.903 17 Si 0.904 3.096 18 H -0.277 1.277 19 H -0.290 1.290 20 H -0.289 1.289 21 C 0.086 3.914 22 C -0.131 4.131 23 C -0.173 4.173 24 C -0.168 4.168 25 H 0.079 0.921 26 H 0.053 0.947 27 H 0.090 0.910 28 H 0.124 0.876 29 H 0.062 0.938 30 H 0.060 0.940 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.030 0.970 34 H 0.002 0.998 35 H 0.045 0.955 36 H 0.253 0.747 37 H 0.071 0.929 38 H 0.067 0.933 39 H 0.115 0.885 40 H 0.102 0.898 41 H 0.098 0.902 42 H 0.099 0.901 43 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.891 -21.404 0.400 21.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.012 4.012 3 C -0.237 4.237 4 C 0.348 3.652 5 O -0.429 6.429 6 N -0.343 5.343 7 C -0.020 4.020 8 C -0.191 4.191 9 C 0.062 3.938 10 H 0.096 0.904 11 N -0.305 5.305 12 C 0.014 3.986 13 C -0.389 4.389 14 H 0.088 0.912 15 C -0.195 4.195 16 N -0.547 5.547 17 Si 0.734 3.266 18 H -0.202 1.202 19 H -0.217 1.217 20 H -0.215 1.215 21 C -0.038 4.038 22 C -0.149 4.149 23 C -0.210 4.210 24 C -0.204 4.204 25 H 0.097 0.903 26 H 0.071 0.929 27 H 0.109 0.891 28 H 0.142 0.858 29 H 0.081 0.919 30 H 0.078 0.922 31 H 0.095 0.905 32 H 0.095 0.905 33 H 0.048 0.952 34 H 0.021 0.979 35 H 0.063 0.937 36 H 0.063 0.937 37 H 0.090 0.910 38 H 0.085 0.915 39 H 0.133 0.867 40 H 0.120 0.880 41 H 0.117 0.883 42 H 0.117 0.883 43 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 0.293 -21.240 0.194 21.243 hybrid contribution -0.015 0.887 0.333 0.948 sum 0.278 -20.353 0.528 20.362 Atomic orbital electron populations 1.21140 0.90831 1.02172 1.03717 1.21738 0.96121 0.92211 0.91104 1.22326 1.00293 0.91788 1.09316 1.18120 0.86380 0.83169 0.77560 1.90741 1.15160 1.87166 1.49830 1.48368 1.10508 1.06066 1.69342 1.22049 0.81415 0.98671 0.99836 1.23211 1.00987 0.91848 1.03101 1.21411 0.90814 0.84997 0.96553 0.90410 1.43836 1.78365 1.00998 1.07325 1.20793 0.99725 0.95276 0.82791 1.19260 1.27870 0.86172 1.05608 0.91177 1.24987 0.97244 0.97954 0.99286 1.70102 1.29233 1.18420 1.36973 0.86191 0.79180 0.82349 0.78857 1.20232 1.21747 1.21545 1.22964 0.98606 0.80689 1.01573 1.21266 1.00123 0.88790 1.04702 1.23078 1.00531 0.97701 0.99658 1.22995 1.03693 1.02047 0.91714 0.90294 0.92869 0.89109 0.85775 0.91932 0.92168 0.90547 0.90521 0.95183 0.97927 0.93658 0.93724 0.91027 0.91492 0.86687 0.87991 0.88347 0.88277 0.88382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.46 7.90 36.01 0.28 -1.17 16 2 C -0.01 -0.11 5.81 -101.16 -0.59 -0.70 16 3 C -0.22 -2.77 9.17 -37.81 -0.35 -3.12 16 4 C 0.56 9.18 7.64 -12.66 -0.10 9.09 16 5 O -0.55 -10.51 13.56 5.26 0.07 -10.44 16 6 N -0.61 -10.11 3.33 -171.92 -0.57 -10.68 16 7 C 0.10 1.45 6.07 -3.07 -0.02 1.44 16 8 C -0.15 -2.55 6.51 -24.90 -0.16 -2.71 16 9 C 0.17 3.47 3.54 -65.79 -0.23 3.24 16 10 H 0.08 1.59 7.95 -51.93 -0.41 1.17 16 11 N -0.58 -14.32 2.96 -171.04 -0.51 -14.82 16 12 C 0.16 3.81 7.63 59.85 0.46 4.27 16 13 C -0.26 -7.02 9.60 -15.06 -0.14 -7.17 16 14 H 0.07 1.86 7.87 -52.49 -0.41 1.45 16 15 C 0.00 0.11 5.01 -17.43 -0.09 0.02 16 16 N -0.90 -25.88 10.88 55.49 0.60 -25.28 16 17 Si 0.90 21.65 29.59 -169.99 -5.03 16.63 16 18 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 19 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 20 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 21 C 0.09 1.63 6.47 -2.54 -0.02 1.62 16 22 C -0.13 -1.13 6.01 -91.77 -0.55 -1.68 16 23 C -0.17 -1.24 9.77 -26.69 -0.26 -1.50 16 24 C -0.17 -1.21 10.10 -26.69 -0.27 -1.48 16 25 H 0.08 1.00 8.03 -51.93 -0.42 0.58 16 26 H 0.05 0.50 6.30 -51.93 -0.33 0.17 16 27 H 0.09 1.30 6.17 -51.93 -0.32 0.98 16 28 H 0.12 1.33 7.40 -52.49 -0.39 0.94 16 29 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 30 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.08 1.37 7.10 -51.93 -0.37 1.00 16 32 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 33 H 0.03 0.77 7.49 -51.93 -0.39 0.38 16 34 H 0.00 0.05 6.33 -51.93 -0.33 -0.28 16 35 H 0.04 1.18 7.23 -51.93 -0.38 0.81 16 36 H 0.25 7.01 8.31 -40.82 -0.34 6.68 16 37 H 0.07 1.44 8.04 -51.93 -0.42 1.02 16 38 H 0.07 1.34 6.30 -51.92 -0.33 1.01 16 39 H 0.12 0.89 8.14 -51.93 -0.42 0.47 16 40 H 0.10 0.73 6.42 -51.93 -0.33 0.40 16 41 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 43 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 340.77 15.07 5.14 5.14 Total: -1.00 -30.44 340.77 -9.24 -39.68 By element: Atomic # 1 Polarization: 6.54 SS G_CDS: -6.91 Total: -0.37 kcal Atomic # 6 Polarization: 2.18 SS G_CDS: -2.03 Total: 0.15 kcal Atomic # 7 Polarization: -50.31 SS G_CDS: -0.47 Total: -50.78 kcal Atomic # 8 Polarization: -10.51 SS G_CDS: 0.07 Total: -10.44 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.03 Total: 16.63 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -30.44 -9.24 -39.68 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000971144599.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.865 kcal (2) G-P(sol) polarization free energy of solvation -30.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.678 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds