Wall clock time and date at job start Tue Mar 31 2020 00:40:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.32996 * 120.00031 * 2 1 4 4 C 1.47101 * 119.99857 * 352.67707 * 3 2 1 5 5 O 1.21618 * 119.99919 * 353.51472 * 4 3 2 6 6 N 1.34777 * 120.00040 * 173.51497 * 4 3 2 7 7 C 1.47023 * 125.64833 * 0.04275 * 6 4 3 8 8 C 1.54320 * 107.27299 * 181.02280 * 7 6 4 9 9 C 1.55153 * 102.94071 * 22.19238 * 8 7 6 10 10 H 1.09007 * 111.03723 * 82.58677 * 9 8 7 11 11 N 1.46502 * 111.00694 * 206.42160 * 9 8 7 12 12 C 1.46509 * 119.99488 * 53.64826 * 11 9 8 13 13 C 1.36936 * 120.00330 * 233.65216 * 11 9 8 14 14 H 1.07997 * 119.99689 * 337.85342 * 13 11 9 15 15 C 1.38815 * 119.99951 * 157.85428 * 13 11 9 16 16 N 1.31626 * 119.99846 * 343.50085 * 15 13 11 17 17 Si 1.86799 * 119.99917 * 163.49549 * 15 13 11 18 18 H 1.48494 * 109.47107 * 0.02562 * 17 15 13 19 19 H 1.48498 * 109.46837 * 120.00167 * 17 15 13 20 20 H 1.48498 * 109.47404 * 240.00093 * 17 15 13 21 21 C 1.47419 * 125.64908 * 180.02562 * 6 4 3 22 22 C 1.50700 * 120.00136 * 179.97438 * 2 1 3 23 23 C 1.53008 * 117.49595 * 8.74760 * 22 2 1 24 24 C 1.52996 * 117.49846 * 300.08868 * 22 2 1 25 25 H 1.08994 * 109.46865 * 84.39065 * 1 2 3 26 26 H 1.09004 * 109.46759 * 204.38954 * 1 2 3 27 27 H 1.08994 * 109.46799 * 324.38629 * 1 2 3 28 28 H 1.07992 * 119.99735 * 172.67802 * 3 2 1 29 29 H 1.08999 * 109.88095 * 300.44521 * 7 6 4 30 30 H 1.09002 * 109.87813 * 61.44504 * 7 6 4 31 31 H 1.08999 * 110.72018 * 263.83283 * 8 7 6 32 32 H 1.08996 * 110.71763 * 140.55392 * 8 7 6 33 33 H 1.08994 * 109.46974 * 267.12284 * 12 11 9 34 34 H 1.08997 * 109.46930 * 27.13069 * 12 11 9 35 35 H 1.09004 * 109.46724 * 147.12543 * 12 11 9 36 36 H 0.96999 * 119.99806 * 179.97438 * 16 15 13 37 37 H 1.09002 * 110.36845 * 37.06403 * 21 6 4 38 38 H 1.09007 * 110.36668 * 274.74670 * 21 6 4 39 39 H 1.08993 * 115.55020 * 154.41551 * 22 2 1 40 40 H 1.08996 * 117.50147 * 359.97438 * 23 22 2 41 41 H 1.09003 * 117.49642 * 145.01950 * 23 22 2 42 42 H 1.09001 * 117.50143 * 214.97436 * 24 22 2 43 43 H 1.09005 * 117.50275 * 359.97432 * 24 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1721 1.1518 0.0000 4 6 1.4455 2.4205 -0.1624 5 8 0.2557 2.4120 -0.4142 6 7 2.0984 3.5924 -0.0321 7 6 3.5291 3.7473 0.2688 8 6 3.8196 5.2609 0.3473 9 6 2.4232 5.8676 0.6461 10 1 2.1934 5.8154 1.7104 11 7 2.3348 7.2467 0.1598 12 6 2.6578 7.5533 -1.2360 13 6 1.9504 8.2492 1.0097 14 1 1.3820 8.0158 1.8978 15 6 2.2915 9.5654 0.7298 16 7 3.2376 9.8279 -0.1468 17 14 1.4075 10.9639 1.5971 18 1 0.3941 10.4069 2.5286 19 1 2.3909 11.7722 2.3619 20 1 0.7354 11.8245 0.5907 21 6 1.4962 4.9311 -0.1681 22 6 2.2606 -1.3051 0.0006 23 6 1.4521 -2.5877 -0.2053 24 6 2.0246 -2.2565 1.1753 25 1 -0.3633 0.1004 -1.0227 26 1 -0.3633 -0.9360 0.4244 27 1 -0.3633 0.8354 0.5984 28 1 3.2454 1.1555 0.1192 29 1 3.7603 3.2754 1.2238 30 1 4.1256 3.2935 -0.5227 31 1 4.2047 5.6295 -0.6034 32 1 4.5158 5.4784 1.1572 33 1 3.7082 7.8340 -1.3126 34 1 2.4702 6.6750 -1.8536 35 1 2.0350 8.3791 -1.5800 36 1 3.4756 10.7476 -0.3427 37 1 0.4890 4.9382 0.2486 38 1 1.4766 5.2337 -1.2151 39 1 3.2637 -1.2689 -0.4241 40 1 0.3752 -2.4876 -0.3407 41 1 1.9236 -3.3954 -0.7650 42 1 2.8724 -2.8467 1.5232 43 1 1.3246 -1.9384 1.9479 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000971144599.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:40:01 Heat of formation + Delta-G solvation = 19.510058 kcal Electronic energy + Delta-G solvation = -21642.771033 eV Core-core repulsion = 18496.405894 eV Total energy + Delta-G solvation = -3146.365138 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -41.17945 -39.41357 -38.46873 -36.56334 -34.12929 -33.46648 -31.38138 -29.79630 -28.45722 -28.06332 -25.82836 -24.38775 -23.56442 -23.17585 -21.03528 -20.57810 -19.03759 -18.94686 -18.20685 -17.48027 -16.90182 -16.40207 -16.19233 -15.67603 -15.31173 -14.95757 -14.86646 -14.42251 -14.29222 -14.04454 -13.82543 -13.69918 -13.36132 -12.99732 -12.87661 -12.80293 -12.51460 -12.44186 -12.38678 -12.18292 -12.14602 -12.08517 -11.85104 -11.81667 -11.45597 -11.31276 -10.67080 -10.60760 -9.97927 -9.50604 -8.81379 -7.86893 -5.33240 0.33058 1.45508 1.48089 1.58016 2.02382 2.24400 2.50862 3.03159 3.25338 3.45353 3.54789 3.85611 3.91225 3.92858 3.97753 4.14092 4.18228 4.21164 4.30897 4.33525 4.44271 4.68060 4.68808 4.75457 4.77329 4.83937 4.88740 5.00047 5.00948 5.04609 5.16529 5.19980 5.27407 5.28202 5.29997 5.40897 5.53400 5.58047 5.62677 5.67065 6.29382 6.61970 7.11023 7.19207 7.81844 8.26197 9.17145 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.042300 B = 0.003165 C = 0.003090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 661.786658 B = 8845.909621 C = 9058.277604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.005 3.995 3 C -0.232 4.232 4 C 0.548 3.452 5 O -0.586 6.586 6 N -0.613 5.613 7 C 0.111 3.889 8 C -0.141 4.141 9 C 0.166 3.834 10 H 0.073 0.927 11 N -0.601 5.601 12 C 0.177 3.823 13 C -0.269 4.269 14 H 0.070 0.930 15 C -0.047 4.047 16 N -0.932 5.932 17 Si 0.967 3.033 18 H -0.269 1.269 19 H -0.289 1.289 20 H -0.292 1.292 21 C 0.099 3.901 22 C -0.145 4.145 23 C -0.168 4.168 24 C -0.159 4.159 25 H 0.068 0.932 26 H 0.077 0.923 27 H 0.063 0.937 28 H 0.151 0.849 29 H 0.090 0.910 30 H 0.088 0.912 31 H 0.065 0.935 32 H 0.084 0.916 33 H 0.011 0.989 34 H 0.027 0.973 35 H 0.016 0.984 36 H 0.250 0.750 37 H 0.052 0.948 38 H 0.054 0.946 39 H 0.130 0.870 40 H 0.099 0.901 41 H 0.116 0.884 42 H 0.117 0.883 43 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.867 -24.100 1.110 24.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.003 3.997 3 C -0.253 4.253 4 C 0.342 3.658 5 O -0.469 6.469 6 N -0.346 5.346 7 C -0.011 4.011 8 C -0.181 4.181 9 C 0.057 3.943 10 H 0.091 0.909 11 N -0.323 5.323 12 C 0.032 3.968 13 C -0.399 4.399 14 H 0.087 0.913 15 C -0.243 4.243 16 N -0.578 5.578 17 Si 0.795 3.205 18 H -0.193 1.193 19 H -0.216 1.216 20 H -0.219 1.219 21 C -0.026 4.026 22 C -0.163 4.163 23 C -0.205 4.205 24 C -0.196 4.196 25 H 0.087 0.913 26 H 0.096 0.904 27 H 0.081 0.919 28 H 0.169 0.831 29 H 0.108 0.892 30 H 0.106 0.894 31 H 0.084 0.916 32 H 0.103 0.897 33 H 0.029 0.971 34 H 0.046 0.954 35 H 0.034 0.966 36 H 0.059 0.941 37 H 0.070 0.930 38 H 0.072 0.928 39 H 0.148 0.852 40 H 0.117 0.883 41 H 0.134 0.866 42 H 0.136 0.864 43 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 1.284 -23.982 0.923 24.034 hybrid contribution -0.402 1.599 0.121 1.653 sum 0.882 -22.383 1.044 22.425 Atomic orbital electron populations 1.21077 0.91749 1.02298 1.02702 1.22022 0.95786 0.93450 0.88421 1.22279 1.01306 0.89959 1.11724 1.18829 0.86180 0.84114 0.76632 1.90728 1.16946 1.87707 1.51538 1.48427 1.11503 1.05058 1.69608 1.22146 0.80005 0.96570 1.02377 1.23049 0.98557 0.93739 1.02747 1.21523 0.93274 0.83228 0.96269 0.90924 1.43987 1.78733 1.02308 1.07226 1.20496 0.97772 0.95202 0.83300 1.19543 1.27459 0.87181 1.05673 0.91269 1.25705 0.98104 1.00063 1.00444 1.70234 1.30554 1.18481 1.38526 0.85218 0.78114 0.79393 0.77777 1.19342 1.21634 1.21869 1.22562 0.97571 0.82295 1.00218 1.21322 1.00728 0.87620 1.06583 1.23191 1.00396 0.97060 0.99845 1.23092 1.04130 1.01010 0.91368 0.91322 0.90388 0.91873 0.83099 0.89188 0.89395 0.91613 0.89728 0.97104 0.95420 0.96560 0.94117 0.92988 0.92794 0.85214 0.88278 0.86612 0.86446 0.88811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.81 7.90 71.24 0.56 -2.25 16 2 C 0.01 0.11 5.81 -17.61 -0.10 0.01 16 3 C -0.23 -5.43 9.17 23.43 0.21 -5.21 16 4 C 0.55 17.73 7.64 86.57 0.66 18.39 16 5 O -0.59 -22.89 13.56 -4.09 -0.06 -22.95 16 6 N -0.61 -19.67 3.33 -816.10 -2.71 -22.39 16 7 C 0.11 2.81 6.07 86.73 0.53 3.33 16 8 C -0.14 -4.56 6.51 31.78 0.21 -4.36 16 9 C 0.17 6.68 3.54 46.37 0.16 6.85 16 10 H 0.07 2.97 7.95 -2.38 -0.02 2.95 16 11 N -0.60 -29.94 2.96 -695.04 -2.06 -32.00 16 12 C 0.18 8.72 7.63 127.77 0.97 9.70 16 13 C -0.27 -14.74 9.60 84.03 0.81 -13.94 16 14 H 0.07 3.72 7.87 -2.91 -0.02 3.70 16 15 C -0.05 -2.64 5.01 84.86 0.42 -2.22 16 16 N -0.93 -54.56 10.88 21.65 0.24 -54.32 16 17 Si 0.97 45.12 29.59 68.60 2.03 47.15 16 18 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 19 H -0.29 -13.38 7.11 99.48 0.71 -12.67 16 20 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 21 C 0.10 3.80 6.47 86.85 0.56 4.36 16 22 C -0.14 -2.00 6.01 -11.54 -0.07 -2.07 16 23 C -0.17 -1.83 9.77 30.62 0.30 -1.53 16 24 C -0.16 -1.72 10.10 30.62 0.31 -1.41 16 25 H 0.07 1.73 8.03 -2.39 -0.02 1.71 16 26 H 0.08 1.35 6.30 -2.39 -0.02 1.34 16 27 H 0.06 1.84 6.17 -2.39 -0.01 1.82 16 28 H 0.15 2.65 7.40 -2.91 -0.02 2.63 16 29 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 30 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 31 H 0.07 2.28 7.10 -2.39 -0.02 2.27 16 32 H 0.08 2.61 8.14 -2.39 -0.02 2.59 16 33 H 0.01 0.57 7.49 -2.39 -0.02 0.55 16 34 H 0.03 1.19 6.33 -2.39 -0.02 1.18 16 35 H 0.02 0.86 7.23 -2.38 -0.02 0.84 16 36 H 0.25 14.16 8.31 -92.71 -0.77 13.38 16 37 H 0.05 2.16 8.04 -2.39 -0.02 2.14 16 38 H 0.05 2.19 6.30 -2.38 -0.02 2.18 16 39 H 0.13 1.47 8.14 -2.39 -0.02 1.45 16 40 H 0.10 1.14 6.42 -2.39 -0.02 1.13 16 41 H 0.12 0.89 8.14 -2.39 -0.02 0.87 16 42 H 0.12 0.88 8.14 -2.39 -0.02 0.86 16 43 H 0.09 1.11 8.14 -2.38 -0.02 1.09 16 Total: -1.00 -67.50 340.77 3.97 -63.54 By element: Atomic # 1 Polarization: 10.35 SS G_CDS: 0.98 Total: 11.33 kcal Atomic # 6 Polarization: 4.09 SS G_CDS: 5.54 Total: 9.63 kcal Atomic # 7 Polarization: -104.17 SS G_CDS: -4.53 Total: -108.71 kcal Atomic # 8 Polarization: -22.89 SS G_CDS: -0.06 Total: -22.95 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 2.03 Total: 47.15 kcal Total: -67.50 3.97 -63.54 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000971144599.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.049 kcal (2) G-P(sol) polarization free energy of solvation -67.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.538 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds