Wall clock time and date at job start Tue Mar 31 2020 00:47:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.46893 * 2 1 4 4 H 1.08998 * 115.56130 * 29.30912 * 3 2 1 5 5 C 1.53002 * 117.49799 * 243.62051 * 3 2 1 6 6 C 1.52995 * 117.49918 * 174.99962 * 3 2 1 7 7 H 1.08993 * 117.52198 * 0.02562 * 6 3 2 8 8 C 1.50707 * 117.49853 * 214.97904 * 6 3 2 9 9 O 1.21282 * 119.99681 * 359.97438 * 8 6 3 10 10 N 1.34774 * 120.00326 * 179.97438 * 8 6 3 11 11 C 1.46490 * 120.00488 * 179.97438 * 10 8 6 12 12 C 1.52994 * 109.47794 * 180.02562 * 11 10 8 13 13 H 1.09005 * 115.48987 * 330.37669 * 12 11 10 14 14 C 1.52998 * 117.44905 * 185.00198 * 12 11 10 15 15 H 1.09002 * 119.53870 * 5.71410 * 14 12 11 16 16 C 1.54388 * 118.12404 * 160.80600 * 14 12 11 17 17 N 1.48143 * 104.61781 * 87.19309 * 16 14 12 18 18 C 1.36932 * 127.84198 * 140.41173 * 17 16 14 19 19 H 1.08000 * 120.00659 * 195.57462 * 18 17 16 20 20 C 1.38819 * 120.00009 * 15.57236 * 18 17 16 21 21 N 1.31620 * 119.99411 * 9.10366 * 20 18 17 22 22 Si 1.86795 * 120.00280 * 189.09676 * 20 18 17 23 23 H 1.48497 * 109.47207 * 0.02562 * 22 20 18 24 24 H 1.48504 * 109.46959 * 120.00023 * 22 20 18 25 25 H 1.48490 * 109.47683 * 239.99943 * 22 20 18 26 26 C 1.48150 * 104.32333 * 320.41205 * 17 16 14 27 27 C 1.52996 * 117.44726 * 115.75696 * 12 11 10 28 28 H 1.09002 * 120.26026 * 356.17737 * 27 12 11 29 29 H 1.08997 * 109.47106 * 299.99975 * 1 2 3 30 30 H 1.08998 * 109.47044 * 60.00494 * 1 2 3 31 31 H 1.09003 * 109.46595 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47850 * 240.00013 * 2 1 3 33 33 H 1.08998 * 109.47044 * 119.99506 * 2 1 3 34 34 H 1.09004 * 117.49843 * 145.01706 * 5 3 2 35 35 H 1.08996 * 117.50056 * 359.97438 * 5 3 2 36 36 H 0.97004 * 119.99552 * 359.97438 * 10 8 6 37 37 H 1.09003 * 109.47303 * 60.00019 * 11 10 8 38 38 H 1.09000 * 109.47384 * 300.00245 * 11 10 8 39 39 H 1.08998 * 110.41201 * 328.40564 * 16 14 12 40 40 H 1.09002 * 110.40418 * 205.97449 * 16 14 12 41 41 H 0.97005 * 119.99784 * 180.02562 * 21 20 18 42 42 H 1.08999 * 110.40830 * 158.36953 * 26 17 16 43 43 H 1.08995 * 110.40746 * 280.80121 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.3883 2.1717 0.4813 5 6 2.8439 1.9076 -1.2158 6 6 3.5500 1.6580 0.1183 7 1 4.1806 0.7724 0.1957 8 6 4.0227 2.8622 0.8914 9 8 3.2155 3.6171 1.3911 10 7 5.3422 3.1003 1.0277 11 6 5.8017 4.2711 1.7787 12 6 7.3312 4.3077 1.7811 13 1 7.8237 3.3368 1.7254 14 6 8.0093 5.3954 2.6163 15 1 7.4030 6.0426 3.2502 16 6 9.4905 5.1976 3.0044 17 7 10.2535 5.7578 1.8648 18 6 11.4030 6.5007 1.9076 19 1 11.7201 7.0558 1.0371 20 6 12.1610 6.5403 3.0700 21 7 11.8784 5.7298 4.0677 22 14 13.5818 7.7439 3.2179 23 1 13.6902 8.5378 1.9677 24 1 13.3400 8.6567 4.3640 25 1 14.8444 6.9944 3.4399 26 6 9.4908 5.3318 0.6683 27 6 8.0095 5.4839 1.0760 28 1 7.4120 6.2234 0.5428 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3632 -1.0277 -0.0005 32 1 1.8935 -0.5138 -0.8899 33 1 1.8933 -0.5137 0.8900 34 1 2.7212 2.9428 -1.5344 35 1 3.0099 1.1858 -2.0155 36 1 5.9877 2.4963 0.6284 37 1 5.4378 4.2105 2.8044 38 1 5.4177 5.1771 1.3099 39 1 9.7132 4.1377 3.1266 40 1 9.7196 5.7430 3.9199 41 1 12.4077 5.7577 4.8801 42 1 9.7202 5.9785 -0.1787 43 1 9.7135 4.2928 0.4256 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000978728762.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:47:21 Heat of formation + Delta-G solvation = 31.468064 kcal Electronic energy + Delta-G solvation = -20812.117792 eV Core-core repulsion = 17666.271192 eV Total energy + Delta-G solvation = -3145.846600 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.14438 -38.86105 -37.28001 -34.92844 -33.32947 -32.35363 -30.85064 -27.73136 -27.14268 -25.33639 -24.22617 -23.47215 -21.15687 -20.87190 -20.45750 -19.58891 -19.25878 -17.39258 -16.81529 -16.12115 -15.39280 -15.12981 -14.80023 -14.67510 -14.40032 -14.05765 -13.66626 -13.16206 -12.91400 -12.72944 -12.69281 -12.58481 -12.42496 -11.85584 -11.64860 -11.35209 -11.27476 -11.11725 -10.85706 -10.66162 -10.57129 -10.33078 -10.30979 -10.11634 -9.95054 -9.75157 -9.41146 -9.12890 -8.94409 -8.65239 -6.88115 -5.81387 -3.15617 2.41335 3.03949 3.36713 3.42828 3.45313 3.58198 4.12046 4.34692 4.45333 4.48006 4.54956 4.84544 4.88724 4.93677 5.01274 5.11865 5.29281 5.35915 5.37736 5.43055 5.48284 5.50647 5.60613 5.67314 5.76730 5.79488 5.82237 5.89303 5.91497 5.96577 6.07415 6.22948 6.37233 6.55076 6.64879 6.70050 6.90698 7.34354 7.48182 7.51985 7.70653 8.18351 8.19477 9.09609 9.72368 10.49444 11.32999 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.060772 B = 0.002477 C = 0.002455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 460.629157 B =11303.475806 C =11404.312632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.095 4.095 3 C -0.119 4.119 4 H 0.118 0.882 5 C -0.149 4.149 6 C -0.191 4.191 7 H 0.123 0.877 8 C 0.540 3.460 9 O -0.546 6.546 10 N -0.719 5.719 11 C 0.154 3.846 12 C -0.149 4.149 13 H 0.103 0.897 14 C -0.163 4.163 15 H 0.104 0.896 16 C 0.183 3.817 17 N -0.595 5.595 18 C -0.226 4.226 19 H 0.077 0.923 20 C -0.007 4.007 21 N -0.915 5.915 22 Si 0.913 3.087 23 H -0.278 1.278 24 H -0.289 1.289 25 H -0.290 1.290 26 C 0.153 3.847 27 C -0.169 4.169 28 H 0.103 0.897 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.055 0.945 32 H 0.065 0.935 33 H 0.068 0.932 34 H 0.099 0.901 35 H 0.104 0.896 36 H 0.403 0.597 37 H 0.070 0.930 38 H 0.067 0.933 39 H 0.023 0.977 40 H 0.090 0.910 41 H 0.254 0.746 42 H 0.050 0.950 43 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.217 -10.885 -8.868 23.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.133 4.133 3 C -0.137 4.137 4 H 0.136 0.864 5 C -0.186 4.186 6 C -0.212 4.212 7 H 0.141 0.859 8 C 0.326 3.674 9 O -0.424 6.424 10 N -0.370 5.370 11 C 0.031 3.969 12 C -0.168 4.168 13 H 0.121 0.879 14 C -0.183 4.183 15 H 0.122 0.878 16 C 0.057 3.943 17 N -0.318 5.318 18 C -0.355 4.355 19 H 0.095 0.905 20 C -0.204 4.204 21 N -0.562 5.562 22 Si 0.743 3.257 23 H -0.204 1.204 24 H -0.216 1.216 25 H -0.217 1.217 26 C 0.027 3.973 27 C -0.189 4.189 28 H 0.121 0.879 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.084 0.916 33 H 0.086 0.914 34 H 0.117 0.883 35 H 0.122 0.878 36 H 0.237 0.763 37 H 0.088 0.912 38 H 0.085 0.915 39 H 0.041 0.959 40 H 0.108 0.892 41 H 0.064 0.936 42 H 0.068 0.932 43 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges -18.529 -10.229 -8.347 22.751 hybrid contribution 1.179 0.321 -0.004 1.222 sum -17.349 -9.908 -8.350 21.654 Atomic orbital electron populations 1.21741 0.95180 1.01622 1.02177 1.21160 0.96290 0.93641 1.02167 1.22479 0.91423 0.98701 1.01115 0.86440 1.23103 1.02018 1.03190 0.90299 1.22311 0.97736 0.99036 1.02129 0.85892 1.19653 0.82274 0.85575 0.79875 1.90691 1.54027 1.48822 1.48844 1.45971 1.06863 1.28664 1.55511 1.20872 0.92218 0.87667 0.96136 1.22520 0.92216 0.95572 1.06540 0.87946 1.24198 1.00010 1.00126 0.93987 0.87834 1.21082 0.82865 0.96874 0.93450 1.45218 1.26016 1.60928 0.99665 1.19046 0.97425 1.19965 0.99015 0.90522 1.24910 0.98695 0.99306 0.97484 1.69910 1.41703 1.38412 1.06162 0.86035 0.81705 0.80330 0.77619 1.20357 1.21601 1.21690 1.21156 0.87678 0.97019 0.91439 1.23975 0.98498 0.99798 0.96653 0.87924 0.92464 0.92531 0.92632 0.91648 0.91382 0.88289 0.87799 0.76296 0.91157 0.91493 0.95901 0.89178 0.93600 0.93183 0.95858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.92 9.87 37.16 0.37 -0.55 16 2 C -0.10 -0.63 6.22 -26.73 -0.17 -0.80 16 3 C -0.12 -1.03 5.25 -90.62 -0.48 -1.51 16 4 H 0.12 1.24 7.60 -51.93 -0.39 0.84 16 5 C -0.15 -1.18 9.88 -26.73 -0.26 -1.44 16 6 C -0.19 -1.75 5.91 -91.77 -0.54 -2.29 16 7 H 0.12 0.88 8.14 -51.93 -0.42 0.46 16 8 C 0.54 6.89 7.61 -10.98 -0.08 6.81 16 9 O -0.55 -9.09 16.26 5.56 0.09 -9.00 16 10 N -0.72 -8.49 5.56 -60.30 -0.33 -8.82 16 11 C 0.15 2.12 5.95 -4.05 -0.02 2.10 16 12 C -0.15 -2.29 5.39 -90.63 -0.49 -2.78 16 13 H 0.10 1.55 8.04 -51.93 -0.42 1.13 16 14 C -0.16 -3.07 6.85 -89.22 -0.61 -3.68 16 15 H 0.10 1.86 8.14 -51.93 -0.42 1.44 16 16 C 0.18 4.38 5.70 -2.41 -0.01 4.36 16 17 N -0.59 -15.23 3.38 -168.86 -0.57 -15.80 16 18 C -0.23 -6.31 10.35 -15.06 -0.16 -6.46 16 19 H 0.08 2.07 7.84 -52.49 -0.41 1.66 16 20 C -0.01 -0.20 5.40 -17.43 -0.09 -0.29 16 21 N -0.92 -26.79 10.86 55.49 0.60 -26.19 16 22 Si 0.91 21.93 29.56 -169.99 -5.03 16.90 16 23 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 24 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 25 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 26 C 0.15 3.18 7.04 -2.40 -0.02 3.17 16 27 C -0.17 -2.98 6.74 -89.22 -0.60 -3.58 16 28 H 0.10 1.68 8.14 -51.93 -0.42 1.26 16 29 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.06 0.37 7.87 -51.93 -0.41 -0.04 16 33 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.10 0.62 8.03 -51.93 -0.42 0.20 16 36 H 0.40 3.80 8.40 -40.82 -0.34 3.46 16 37 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 38 H 0.07 0.97 7.95 -51.93 -0.41 0.56 16 39 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.09 2.42 6.51 -51.93 -0.34 2.08 16 41 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 42 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 43 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 LS Contribution 353.37 15.07 5.33 5.33 Total: -1.00 -31.88 353.37 -10.44 -42.32 By element: Atomic # 1 Polarization: 9.55 SS G_CDS: -7.35 Total: 2.20 kcal Atomic # 6 Polarization: -3.77 SS G_CDS: -3.17 Total: -6.94 kcal Atomic # 7 Polarization: -50.50 SS G_CDS: -0.30 Total: -50.81 kcal Atomic # 8 Polarization: -9.09 SS G_CDS: 0.09 Total: -9.00 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.03 Total: 16.90 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -31.88 -10.44 -42.32 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000978728762.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.787 kcal (2) G-P(sol) polarization free energy of solvation -31.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.319 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds