Wall clock time and date at job start Tue Mar 31 2020 00:47:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.46893 * 2 1 4 4 H 1.08998 * 115.56130 * 29.30912 * 3 2 1 5 5 C 1.53002 * 117.49799 * 243.62051 * 3 2 1 6 6 C 1.52995 * 117.49918 * 174.99962 * 3 2 1 7 7 H 1.08993 * 117.52198 * 0.02562 * 6 3 2 8 8 C 1.50707 * 117.49853 * 214.97904 * 6 3 2 9 9 O 1.21282 * 119.99681 * 359.97438 * 8 6 3 10 10 N 1.34774 * 120.00326 * 179.97438 * 8 6 3 11 11 C 1.46490 * 120.00488 * 179.97438 * 10 8 6 12 12 C 1.52994 * 109.47794 * 180.02562 * 11 10 8 13 13 H 1.09005 * 115.48987 * 330.37669 * 12 11 10 14 14 C 1.52998 * 117.44905 * 185.00198 * 12 11 10 15 15 H 1.09002 * 119.53870 * 5.71410 * 14 12 11 16 16 C 1.54388 * 118.12404 * 160.80600 * 14 12 11 17 17 N 1.48143 * 104.61781 * 87.19309 * 16 14 12 18 18 C 1.36932 * 127.84198 * 140.41173 * 17 16 14 19 19 H 1.08000 * 120.00659 * 195.57462 * 18 17 16 20 20 C 1.38819 * 120.00009 * 15.57236 * 18 17 16 21 21 N 1.31620 * 119.99411 * 9.10366 * 20 18 17 22 22 Si 1.86795 * 120.00280 * 189.09676 * 20 18 17 23 23 H 1.48497 * 109.47207 * 0.02562 * 22 20 18 24 24 H 1.48504 * 109.46959 * 120.00023 * 22 20 18 25 25 H 1.48490 * 109.47683 * 239.99943 * 22 20 18 26 26 C 1.48150 * 104.32333 * 320.41205 * 17 16 14 27 27 C 1.52996 * 117.44726 * 115.75696 * 12 11 10 28 28 H 1.09002 * 120.26026 * 356.17737 * 27 12 11 29 29 H 1.08997 * 109.47106 * 299.99975 * 1 2 3 30 30 H 1.08998 * 109.47044 * 60.00494 * 1 2 3 31 31 H 1.09003 * 109.46595 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47850 * 240.00013 * 2 1 3 33 33 H 1.08998 * 109.47044 * 119.99506 * 2 1 3 34 34 H 1.09004 * 117.49843 * 145.01706 * 5 3 2 35 35 H 1.08996 * 117.50056 * 359.97438 * 5 3 2 36 36 H 0.97004 * 119.99552 * 359.97438 * 10 8 6 37 37 H 1.09003 * 109.47303 * 60.00019 * 11 10 8 38 38 H 1.09000 * 109.47384 * 300.00245 * 11 10 8 39 39 H 1.08998 * 110.41201 * 328.40564 * 16 14 12 40 40 H 1.09002 * 110.40418 * 205.97449 * 16 14 12 41 41 H 0.97005 * 119.99784 * 180.02562 * 21 20 18 42 42 H 1.08999 * 110.40830 * 158.36953 * 26 17 16 43 43 H 1.08995 * 110.40746 * 280.80121 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.3883 2.1717 0.4813 5 6 2.8439 1.9076 -1.2158 6 6 3.5500 1.6580 0.1183 7 1 4.1806 0.7724 0.1957 8 6 4.0227 2.8622 0.8914 9 8 3.2155 3.6171 1.3911 10 7 5.3422 3.1003 1.0277 11 6 5.8017 4.2711 1.7787 12 6 7.3312 4.3077 1.7811 13 1 7.8237 3.3368 1.7254 14 6 8.0093 5.3954 2.6163 15 1 7.4030 6.0426 3.2502 16 6 9.4905 5.1976 3.0044 17 7 10.2535 5.7578 1.8648 18 6 11.4030 6.5007 1.9076 19 1 11.7201 7.0558 1.0371 20 6 12.1610 6.5403 3.0700 21 7 11.8784 5.7298 4.0677 22 14 13.5818 7.7439 3.2179 23 1 13.6902 8.5378 1.9677 24 1 13.3400 8.6567 4.3640 25 1 14.8444 6.9944 3.4399 26 6 9.4908 5.3318 0.6683 27 6 8.0095 5.4839 1.0760 28 1 7.4120 6.2234 0.5428 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3632 -1.0277 -0.0005 32 1 1.8935 -0.5138 -0.8899 33 1 1.8933 -0.5137 0.8900 34 1 2.7212 2.9428 -1.5344 35 1 3.0099 1.1858 -2.0155 36 1 5.9877 2.4963 0.6284 37 1 5.4378 4.2105 2.8044 38 1 5.4177 5.1771 1.3099 39 1 9.7132 4.1377 3.1266 40 1 9.7196 5.7430 3.9199 41 1 12.4077 5.7577 4.8801 42 1 9.7202 5.9785 -0.1787 43 1 9.7135 4.2928 0.4256 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000978728762.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:47:21 Heat of formation + Delta-G solvation = 12.564914 kcal Electronic energy + Delta-G solvation = -20812.937494 eV Core-core repulsion = 17666.271192 eV Total energy + Delta-G solvation = -3146.666302 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.15157 -40.34207 -38.07996 -36.30642 -34.98487 -32.98301 -32.62948 -29.18926 -28.86518 -26.98234 -24.93822 -24.37274 -22.80195 -21.88604 -21.37741 -20.89560 -20.67170 -18.85781 -18.27936 -17.22743 -16.76684 -16.39039 -16.10144 -15.60386 -15.37492 -15.30523 -15.03688 -14.64454 -14.47691 -14.18101 -13.49983 -13.40897 -13.32226 -13.19827 -12.96043 -12.90213 -12.74920 -12.31472 -12.16627 -11.98960 -11.92923 -11.90182 -11.78061 -11.26825 -11.08812 -10.96807 -10.82362 -10.72156 -10.52638 -10.06050 -8.91871 -7.93106 -5.29281 1.45523 1.46536 1.48020 1.57368 2.06688 2.46449 2.72125 2.88102 3.24892 3.58728 3.65930 3.70641 3.79550 3.82921 3.89888 4.15049 4.23791 4.26238 4.30748 4.41589 4.50968 4.54954 4.58788 4.64203 4.71458 4.81064 4.92449 4.96405 5.01245 5.02295 5.17766 5.19377 5.25085 5.31878 5.33106 5.43965 5.45565 5.51635 5.52476 5.65269 6.16901 6.55312 7.00017 7.23047 7.67167 8.45434 9.20845 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.060772 B = 0.002477 C = 0.002455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 460.629157 B =11303.475806 C =11404.312632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.090 4.090 3 C -0.125 4.125 4 H 0.092 0.908 5 C -0.135 4.135 6 C -0.194 4.194 7 H 0.150 0.850 8 C 0.536 3.464 9 O -0.591 6.591 10 N -0.710 5.710 11 C 0.163 3.837 12 C -0.108 4.108 13 H 0.111 0.889 14 C -0.179 4.179 15 H 0.112 0.888 16 C 0.189 3.811 17 N -0.621 5.621 18 C -0.239 4.239 19 H 0.081 0.919 20 C -0.065 4.065 21 N -0.948 5.948 22 Si 0.980 3.020 23 H -0.264 1.264 24 H -0.292 1.292 25 H -0.291 1.291 26 C 0.148 3.852 27 C -0.158 4.158 28 H 0.123 0.877 29 H 0.046 0.954 30 H 0.057 0.943 31 H 0.066 0.934 32 H 0.083 0.917 33 H 0.068 0.932 34 H 0.087 0.913 35 H 0.132 0.868 36 H 0.417 0.583 37 H 0.066 0.934 38 H 0.065 0.935 39 H 0.003 0.997 40 H 0.052 0.948 41 H 0.250 0.750 42 H 0.057 0.943 43 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.008 -11.888 -10.815 24.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.128 4.128 3 C -0.143 4.143 4 H 0.110 0.890 5 C -0.173 4.173 6 C -0.215 4.215 7 H 0.168 0.832 8 C 0.324 3.676 9 O -0.472 6.472 10 N -0.362 5.362 11 C 0.039 3.961 12 C -0.127 4.127 13 H 0.129 0.871 14 C -0.199 4.199 15 H 0.130 0.870 16 C 0.063 3.937 17 N -0.346 5.346 18 C -0.368 4.368 19 H 0.099 0.901 20 C -0.259 4.259 21 N -0.596 5.596 22 Si 0.808 3.192 23 H -0.189 1.189 24 H -0.219 1.219 25 H -0.218 1.218 26 C 0.023 3.977 27 C -0.177 4.177 28 H 0.141 0.859 29 H 0.065 0.935 30 H 0.076 0.924 31 H 0.085 0.915 32 H 0.101 0.899 33 H 0.087 0.913 34 H 0.106 0.894 35 H 0.150 0.850 36 H 0.254 0.746 37 H 0.084 0.916 38 H 0.083 0.917 39 H 0.021 0.979 40 H 0.070 0.930 41 H 0.059 0.941 42 H 0.075 0.925 43 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -19.322 -11.256 -10.340 24.636 hybrid contribution 1.392 0.611 0.574 1.625 sum -17.930 -10.645 -9.766 23.025 Atomic orbital electron populations 1.21750 0.95087 1.02229 1.01757 1.21161 0.96361 0.92222 1.03023 1.22486 0.90795 0.99458 1.01595 0.89027 1.23201 1.00424 1.03323 0.90328 1.22360 0.98329 0.98244 1.02547 0.83201 1.20287 0.81902 0.86049 0.79362 1.90675 1.55118 1.50622 1.50784 1.45854 1.07140 1.28176 1.54984 1.20646 0.90609 0.88556 0.96300 1.22395 0.93012 0.94793 1.02452 0.87106 1.23897 0.97595 1.03325 0.95098 0.86994 1.20810 0.86047 0.94839 0.92004 1.45543 1.26144 1.61073 1.01798 1.19423 0.98204 1.20033 0.99163 0.90119 1.25761 1.01547 1.01213 0.97333 1.70101 1.42847 1.40101 1.06503 0.84989 0.78322 0.78087 0.77777 1.18853 1.21854 1.21758 1.21316 0.88969 0.97258 0.90140 1.23913 0.97125 1.01528 0.95153 0.85942 0.93504 0.92416 0.91477 0.89879 0.91341 0.89442 0.84998 0.74607 0.91627 0.91714 0.97915 0.92974 0.94131 0.92463 0.95284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.62 9.87 71.98 0.71 -0.91 16 2 C -0.09 -0.99 6.22 30.60 0.19 -0.80 16 3 C -0.12 -1.96 5.25 -10.79 -0.06 -2.02 16 4 H 0.09 1.94 7.60 -2.39 -0.02 1.92 16 5 C -0.14 -1.79 9.88 30.59 0.30 -1.48 16 6 C -0.19 -3.08 5.91 -11.54 -0.07 -3.15 16 7 H 0.15 1.57 8.14 -2.39 -0.02 1.55 16 8 C 0.54 12.81 7.61 87.66 0.67 13.48 16 9 O -0.59 -19.44 16.26 -3.04 -0.05 -19.49 16 10 N -0.71 -15.03 5.56 -463.08 -2.57 -17.60 16 11 C 0.16 4.15 5.95 86.38 0.51 4.66 16 12 C -0.11 -3.06 5.39 -10.80 -0.06 -3.12 16 13 H 0.11 3.06 8.04 -2.38 -0.02 3.04 16 14 C -0.18 -6.64 6.85 -9.89 -0.07 -6.71 16 15 H 0.11 3.97 8.14 -2.39 -0.02 3.95 16 16 C 0.19 9.26 5.70 86.53 0.49 9.75 16 17 N -0.62 -32.11 3.38 -688.15 -2.33 -34.44 16 18 C -0.24 -13.47 10.35 84.04 0.87 -12.60 16 19 H 0.08 4.34 7.84 -2.91 -0.02 4.32 16 20 C -0.06 -3.71 5.40 84.86 0.46 -3.25 16 21 N -0.95 -57.18 10.86 21.65 0.24 -56.95 16 22 Si 0.98 45.64 29.56 68.60 2.03 47.67 16 23 H -0.26 -11.55 7.11 99.48 0.71 -10.84 16 24 H -0.29 -13.58 7.11 99.48 0.71 -12.87 16 25 H -0.29 -13.46 7.11 99.48 0.71 -12.75 16 26 C 0.15 5.98 7.04 86.53 0.61 6.59 16 27 C -0.16 -5.22 6.74 -9.89 -0.07 -5.29 16 28 H 0.12 3.64 8.14 -2.39 -0.02 3.62 16 29 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 30 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 31 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 32 H 0.08 0.64 7.87 -2.39 -0.02 0.62 16 33 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 34 H 0.09 1.38 8.14 -2.38 -0.02 1.36 16 35 H 0.13 1.02 8.03 -2.39 -0.02 1.00 16 36 H 0.42 6.51 8.40 -92.71 -0.78 5.73 16 37 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 38 H 0.06 1.74 7.95 -2.39 -0.02 1.72 16 39 H 0.00 0.15 8.14 -2.39 -0.02 0.13 16 40 H 0.05 2.93 6.51 -2.39 -0.02 2.91 16 41 H 0.25 14.55 8.31 -92.70 -0.77 13.78 16 42 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 43 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 Total: -1.00 -70.96 353.37 2.02 -68.94 By element: Atomic # 1 Polarization: 16.51 SS G_CDS: 0.21 Total: 16.71 kcal Atomic # 6 Polarization: -9.35 SS G_CDS: 4.50 Total: -4.85 kcal Atomic # 7 Polarization: -104.33 SS G_CDS: -4.66 Total: -108.99 kcal Atomic # 8 Polarization: -19.44 SS G_CDS: -0.05 Total: -19.49 kcal Atomic # 14 Polarization: 45.64 SS G_CDS: 2.03 Total: 47.67 kcal Total: -70.96 2.02 -68.94 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000978728762.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.507 kcal (2) G-P(sol) polarization free energy of solvation -70.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.942 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds