Wall clock time and date at job start Tue Mar 31 2020 00:37:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.50695 * 120.00225 * 2 1 4 4 C 1.32994 * 119.99863 * 180.02562 * 2 1 3 5 5 C 1.47098 * 120.00198 * 1.98251 * 4 2 1 6 6 O 1.21614 * 119.99930 * 354.23574 * 5 4 2 7 7 N 1.34774 * 120.00314 * 174.23961 * 5 4 2 8 8 C 1.47675 * 134.45716 * 179.97438 * 7 5 4 9 9 C 1.53433 * 85.97834 * 155.70952 * 8 7 5 10 10 C 1.47674 * 134.45403 * 359.97438 * 7 5 4 11 11 C 1.52636 * 113.72800 * 268.86213 * 9 8 7 12 12 C 1.53183 * 109.33873 * 171.19559 * 11 9 8 13 13 C 1.52669 * 109.42925 * 58.92834 * 12 11 9 14 14 N 1.46890 * 109.36057 * 303.78873 * 13 12 11 15 15 C 1.36936 * 120.69278 * 235.29875 * 14 13 12 16 16 H 1.08001 * 120.00189 * 25.10191 * 15 14 13 17 17 C 1.38817 * 120.00200 * 205.10886 * 15 14 13 18 18 N 1.31611 * 120.00384 * 200.94728 * 17 15 14 19 19 Si 1.86806 * 119.99647 * 20.94973 * 17 15 14 20 20 H 1.48499 * 109.46952 * 264.89215 * 19 17 15 21 21 H 1.48503 * 109.47269 * 24.89399 * 19 17 15 22 22 H 1.48502 * 109.46976 * 144.89474 * 19 17 15 23 23 C 1.47122 * 118.61756 * 55.02274 * 14 13 12 24 24 H 1.08999 * 109.47154 * 239.28442 * 1 2 3 25 25 H 1.09004 * 109.47430 * 359.28925 * 1 2 3 26 26 H 1.08997 * 109.47484 * 119.28748 * 1 2 3 27 27 H 1.08998 * 109.47391 * 270.00589 * 3 2 1 28 28 H 1.09005 * 109.46921 * 30.00650 * 3 2 1 29 29 H 1.09001 * 109.47388 * 150.00119 * 3 2 1 30 30 H 1.08000 * 119.99852 * 181.97625 * 4 2 1 31 31 H 1.09001 * 113.79107 * 41.44376 * 8 7 5 32 32 H 1.08995 * 113.79183 * 269.97637 * 8 7 5 33 33 H 1.08994 * 113.79632 * 90.01705 * 10 7 5 34 34 H 1.08999 * 113.79069 * 318.54676 * 10 7 5 35 35 H 1.08998 * 109.49067 * 291.14994 * 11 9 8 36 36 H 1.08998 * 109.49492 * 51.23420 * 11 9 8 37 37 H 1.09006 * 109.49282 * 179.02978 * 12 11 9 38 38 H 1.09004 * 109.49230 * 299.07126 * 12 11 9 39 39 H 1.08997 * 109.43916 * 183.79618 * 13 12 11 40 40 H 1.09001 * 109.36535 * 63.73100 * 13 12 11 41 41 H 0.96998 * 120.00240 * 179.97438 * 18 17 15 42 42 H 1.09003 * 109.64047 * 68.55877 * 23 14 13 43 43 H 1.08999 * 109.64297 * 189.18952 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2605 1.3050 0.0000 4 6 2.1719 -1.1518 -0.0005 5 6 1.4371 -2.4253 -0.0452 6 8 0.2229 -2.4295 0.0242 7 7 2.1093 -3.5875 -0.1629 8 6 1.7136 -5.0083 -0.2365 9 6 3.0479 -5.2305 -0.9607 10 6 3.5368 -3.9503 -0.2699 11 6 2.9504 -5.1087 -2.4790 12 6 4.3588 -5.1280 -3.0810 13 6 5.0585 -6.4287 -2.6945 14 7 5.0676 -6.5607 -1.2316 15 6 6.2435 -6.7409 -0.5534 16 1 7.1728 -6.3965 -0.9826 17 6 6.2412 -7.3665 0.6859 18 7 7.2468 -7.1869 1.5157 19 14 4.8106 -8.4635 1.1756 20 1 3.8326 -7.6766 1.9691 21 1 4.1488 -8.9887 -0.0457 22 1 5.3132 -9.5970 1.9927 23 6 3.7878 -6.4890 -0.5096 24 1 -0.3633 -0.5249 0.8835 25 1 -0.3634 1.0276 0.0127 26 1 -0.3634 -0.5027 -0.8963 27 1 2.4421 1.6198 -1.0276 28 1 1.6714 2.0647 0.5140 29 1 3.2129 1.1747 0.5138 30 1 3.2514 -1.1521 0.0317 31 1 0.8388 -5.1893 -0.8611 32 1 1.6535 -5.4989 0.7349 33 1 4.0191 -4.1261 0.6916 34 1 4.1104 -3.2908 -0.9211 35 1 2.3743 -5.9451 -2.8748 36 1 2.4570 -4.1719 -2.7378 37 1 4.2914 -5.0584 -4.1667 38 1 4.9300 -4.2825 -2.6973 39 1 6.0833 -6.4134 -3.0655 40 1 4.5235 -7.2710 -3.1331 41 1 7.2450 -7.6237 2.3817 42 1 3.1874 -7.3692 -0.7399 43 1 3.9745 -6.4395 0.5631 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981592796.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:37:31 Heat of formation + Delta-G solvation = 36.040732 kcal Electronic energy + Delta-G solvation = -22586.385793 eV Core-core repulsion = 19440.737478 eV Total energy + Delta-G solvation = -3145.648315 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.59383 -38.66072 -36.16651 -35.19957 -32.89220 -30.79542 -30.71775 -28.23748 -27.80670 -26.03228 -25.61374 -25.37411 -22.67453 -20.98825 -19.88196 -18.45541 -17.84811 -17.02800 -16.77921 -15.78960 -15.34806 -14.94580 -14.39918 -14.34478 -14.14223 -13.77910 -13.59673 -13.43165 -13.11266 -12.97184 -12.57486 -12.35562 -12.27985 -12.03528 -11.97350 -11.73169 -11.67018 -11.52327 -11.36513 -10.86581 -10.52720 -10.49034 -10.12587 -9.98691 -9.69984 -9.47915 -9.32411 -9.19674 -8.67203 -8.35457 -7.03940 -5.98983 -3.33354 1.39999 3.08152 3.27248 3.44354 3.46220 3.47047 4.43626 4.49562 4.61061 4.75921 5.01180 5.02896 5.10448 5.25630 5.31488 5.33511 5.34262 5.55856 5.58555 5.61249 5.63333 5.68590 5.76828 5.81239 5.85214 5.90542 5.93394 6.02847 6.16888 6.21658 6.28263 6.31962 6.43788 6.45465 6.49579 6.56610 6.60515 6.69336 6.88255 7.88543 7.96783 8.28056 8.39462 8.88575 9.67421 10.04712 11.16768 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.021783 B = 0.004888 C = 0.004752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1285.102807 B = 5726.657464 C = 5890.574605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.044 4.044 3 C -0.125 4.125 4 C -0.223 4.223 5 C 0.563 3.437 6 O -0.555 6.555 7 N -0.638 5.638 8 C 0.113 3.887 9 C -0.105 4.105 10 C 0.124 3.876 11 C -0.083 4.083 12 C -0.135 4.135 13 C 0.148 3.852 14 N -0.603 5.603 15 C -0.258 4.258 16 H 0.088 0.912 17 C 0.024 3.976 18 N -0.907 5.907 19 Si 0.876 3.124 20 H -0.289 1.289 21 H -0.268 1.268 22 H -0.303 1.303 23 C 0.142 3.858 24 H 0.082 0.918 25 H 0.049 0.951 26 H 0.078 0.922 27 H 0.077 0.923 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.124 0.876 31 H 0.078 0.922 32 H 0.083 0.917 33 H 0.091 0.909 34 H 0.080 0.920 35 H 0.062 0.938 36 H 0.054 0.946 37 H 0.056 0.944 38 H 0.062 0.938 39 H 0.063 0.937 40 H 0.022 0.978 41 H 0.263 0.737 42 H 0.032 0.968 43 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.703 11.557 -5.577 16.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.046 4.046 3 C -0.181 4.181 4 C -0.243 4.243 5 C 0.357 3.643 6 O -0.436 6.436 7 N -0.372 5.372 8 C -0.010 4.010 9 C -0.108 4.108 10 C 0.002 3.998 11 C -0.120 4.120 12 C -0.174 4.174 13 C 0.022 3.978 14 N -0.326 5.326 15 C -0.386 4.386 16 H 0.105 0.895 17 C -0.175 4.175 18 N -0.550 5.550 19 Si 0.706 3.294 20 H -0.217 1.217 21 H -0.193 1.193 22 H -0.231 1.231 23 C 0.015 3.985 24 H 0.101 0.899 25 H 0.068 0.932 26 H 0.097 0.903 27 H 0.096 0.904 28 H 0.088 0.912 29 H 0.089 0.911 30 H 0.142 0.858 31 H 0.096 0.904 32 H 0.101 0.899 33 H 0.109 0.891 34 H 0.098 0.902 35 H 0.080 0.920 36 H 0.073 0.927 37 H 0.075 0.925 38 H 0.081 0.919 39 H 0.081 0.919 40 H 0.040 0.960 41 H 0.072 0.928 42 H 0.050 0.950 43 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -10.312 11.677 -5.376 16.480 hybrid contribution -0.564 -0.709 0.560 1.065 sum -10.876 10.968 -4.816 16.179 Atomic orbital electron populations 1.21005 0.90930 1.00700 1.04299 1.22521 0.96808 0.94396 0.90837 1.20994 1.00104 0.94234 1.02776 1.22370 1.00215 0.91744 1.10004 1.18212 0.86660 0.83253 0.76196 1.90736 1.13803 1.87192 1.51905 1.50069 1.09923 1.05232 1.71957 1.23204 0.98183 0.79436 1.00153 1.22608 0.94520 0.97507 0.96158 1.23240 0.81868 0.94087 1.00649 1.21102 0.97555 1.01006 0.92383 1.21938 0.95904 1.00707 0.98852 1.20805 0.98834 0.93627 0.84493 1.44342 1.02734 1.84542 1.00995 1.18927 0.86017 1.32701 1.00963 0.89490 1.25211 0.96538 0.99056 0.96713 1.69826 1.32565 1.44610 1.08025 0.87069 0.82590 0.81588 0.78123 1.21725 1.19313 1.23120 1.21282 0.87257 0.92866 0.97052 0.89925 0.93186 0.90321 0.90433 0.91151 0.91108 0.85797 0.90354 0.89929 0.89110 0.90169 0.91971 0.92712 0.92494 0.91942 0.91877 0.95963 0.92757 0.94986 0.90679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.34 8.33 36.00 0.30 -1.04 16 2 C -0.04 -0.51 6.11 -101.17 -0.62 -1.13 16 3 C -0.12 -1.03 9.98 36.00 0.36 -0.67 16 4 C -0.22 -3.01 9.41 -37.81 -0.36 -3.37 16 5 C 0.56 9.30 7.95 -12.67 -0.10 9.20 16 6 O -0.55 -10.32 13.83 5.26 0.07 -10.25 16 7 N -0.64 -10.33 3.45 -181.86 -0.63 -10.95 16 8 C 0.11 1.79 7.97 -3.18 -0.03 1.77 16 9 C -0.11 -1.75 0.87 -154.43 -0.13 -1.88 16 10 C 0.12 2.01 7.45 -3.17 -0.02 1.98 16 11 C -0.08 -1.24 5.03 -26.82 -0.13 -1.37 16 12 C -0.13 -2.04 5.99 -26.81 -0.16 -2.20 16 13 C 0.15 2.71 6.42 -4.00 -0.03 2.69 16 14 N -0.60 -13.33 2.81 -172.75 -0.49 -13.81 16 15 C -0.26 -6.81 10.06 -15.06 -0.15 -6.96 16 16 H 0.09 2.46 8.05 -52.49 -0.42 2.04 16 17 C 0.02 0.65 5.24 -17.43 -0.09 0.56 16 18 N -0.91 -26.85 13.97 55.49 0.78 -26.08 16 19 Si 0.88 21.48 24.31 -169.99 -4.13 17.35 16 20 H -0.29 -6.84 6.70 56.52 0.38 -6.46 16 21 H -0.27 -6.43 6.38 56.52 0.36 -6.06 16 22 H -0.30 -7.67 7.11 56.52 0.40 -7.27 16 23 C 0.14 2.87 3.35 -3.81 -0.01 2.85 16 24 H 0.08 1.12 7.14 -51.93 -0.37 0.75 16 25 H 0.05 0.46 7.94 -51.93 -0.41 0.05 16 26 H 0.08 1.04 7.31 -51.93 -0.38 0.66 16 27 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.07 0.49 8.04 -51.93 -0.42 0.07 16 29 H 0.07 0.56 8.07 -51.93 -0.42 0.14 16 30 H 0.12 1.52 7.91 -52.49 -0.41 1.11 16 31 H 0.08 1.17 8.09 -51.93 -0.42 0.75 16 32 H 0.08 1.30 8.09 -51.93 -0.42 0.88 16 33 H 0.09 1.59 7.97 -51.93 -0.41 1.17 16 34 H 0.08 1.22 7.36 -51.93 -0.38 0.84 16 35 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.05 0.79 8.02 -51.93 -0.42 0.38 16 37 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 38 H 0.06 0.99 7.36 -51.93 -0.38 0.60 16 39 H 0.06 1.16 7.92 -51.93 -0.41 0.75 16 40 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 41 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 42 H 0.03 0.65 6.85 -51.93 -0.36 0.30 16 43 H 0.08 1.68 4.37 -51.93 -0.23 1.45 16 LS Contribution 334.09 15.07 5.03 5.03 Total: -1.00 -30.46 334.09 -7.69 -38.15 By element: Atomic # 1 Polarization: 7.28 SS G_CDS: -7.16 Total: 0.12 kcal Atomic # 6 Polarization: 1.61 SS G_CDS: -1.18 Total: 0.43 kcal Atomic # 7 Polarization: -50.50 SS G_CDS: -0.34 Total: -50.84 kcal Atomic # 8 Polarization: -10.32 SS G_CDS: 0.07 Total: -10.25 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -4.13 Total: 17.35 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -30.46 -7.69 -38.15 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981592796.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.192 kcal (2) G-P(sol) polarization free energy of solvation -30.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.151 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds