Wall clock time and date at job start Tue Mar 31 2020 00:37:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.50695 * 120.00225 * 2 1 4 4 C 1.32994 * 119.99863 * 180.02562 * 2 1 3 5 5 C 1.47098 * 120.00198 * 1.98251 * 4 2 1 6 6 O 1.21614 * 119.99930 * 354.23574 * 5 4 2 7 7 N 1.34774 * 120.00314 * 174.23961 * 5 4 2 8 8 C 1.47675 * 134.45716 * 179.97438 * 7 5 4 9 9 C 1.53433 * 85.97834 * 155.70952 * 8 7 5 10 10 C 1.47674 * 134.45403 * 359.97438 * 7 5 4 11 11 C 1.52636 * 113.72800 * 268.86213 * 9 8 7 12 12 C 1.53183 * 109.33873 * 171.19559 * 11 9 8 13 13 C 1.52669 * 109.42925 * 58.92834 * 12 11 9 14 14 N 1.46890 * 109.36057 * 303.78873 * 13 12 11 15 15 C 1.36936 * 120.69278 * 235.29875 * 14 13 12 16 16 H 1.08001 * 120.00189 * 25.10191 * 15 14 13 17 17 C 1.38817 * 120.00200 * 205.10886 * 15 14 13 18 18 N 1.31611 * 120.00384 * 200.94728 * 17 15 14 19 19 Si 1.86806 * 119.99647 * 20.94973 * 17 15 14 20 20 H 1.48499 * 109.46952 * 264.89215 * 19 17 15 21 21 H 1.48503 * 109.47269 * 24.89399 * 19 17 15 22 22 H 1.48502 * 109.46976 * 144.89474 * 19 17 15 23 23 C 1.47122 * 118.61756 * 55.02274 * 14 13 12 24 24 H 1.08999 * 109.47154 * 239.28442 * 1 2 3 25 25 H 1.09004 * 109.47430 * 359.28925 * 1 2 3 26 26 H 1.08997 * 109.47484 * 119.28748 * 1 2 3 27 27 H 1.08998 * 109.47391 * 270.00589 * 3 2 1 28 28 H 1.09005 * 109.46921 * 30.00650 * 3 2 1 29 29 H 1.09001 * 109.47388 * 150.00119 * 3 2 1 30 30 H 1.08000 * 119.99852 * 181.97625 * 4 2 1 31 31 H 1.09001 * 113.79107 * 41.44376 * 8 7 5 32 32 H 1.08995 * 113.79183 * 269.97637 * 8 7 5 33 33 H 1.08994 * 113.79632 * 90.01705 * 10 7 5 34 34 H 1.08999 * 113.79069 * 318.54676 * 10 7 5 35 35 H 1.08998 * 109.49067 * 291.14994 * 11 9 8 36 36 H 1.08998 * 109.49492 * 51.23420 * 11 9 8 37 37 H 1.09006 * 109.49282 * 179.02978 * 12 11 9 38 38 H 1.09004 * 109.49230 * 299.07126 * 12 11 9 39 39 H 1.08997 * 109.43916 * 183.79618 * 13 12 11 40 40 H 1.09001 * 109.36535 * 63.73100 * 13 12 11 41 41 H 0.96998 * 120.00240 * 179.97438 * 18 17 15 42 42 H 1.09003 * 109.64047 * 68.55877 * 23 14 13 43 43 H 1.08999 * 109.64297 * 189.18952 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2605 1.3050 0.0000 4 6 2.1719 -1.1518 -0.0005 5 6 1.4371 -2.4253 -0.0452 6 8 0.2229 -2.4295 0.0242 7 7 2.1093 -3.5875 -0.1629 8 6 1.7136 -5.0083 -0.2365 9 6 3.0479 -5.2305 -0.9607 10 6 3.5368 -3.9503 -0.2699 11 6 2.9504 -5.1087 -2.4790 12 6 4.3588 -5.1280 -3.0810 13 6 5.0585 -6.4287 -2.6945 14 7 5.0676 -6.5607 -1.2316 15 6 6.2435 -6.7409 -0.5534 16 1 7.1728 -6.3965 -0.9826 17 6 6.2412 -7.3665 0.6859 18 7 7.2468 -7.1869 1.5157 19 14 4.8106 -8.4635 1.1756 20 1 3.8326 -7.6766 1.9691 21 1 4.1488 -8.9887 -0.0457 22 1 5.3132 -9.5970 1.9927 23 6 3.7878 -6.4890 -0.5096 24 1 -0.3633 -0.5249 0.8835 25 1 -0.3634 1.0276 0.0127 26 1 -0.3634 -0.5027 -0.8963 27 1 2.4421 1.6198 -1.0276 28 1 1.6714 2.0647 0.5140 29 1 3.2129 1.1747 0.5138 30 1 3.2514 -1.1521 0.0317 31 1 0.8388 -5.1893 -0.8611 32 1 1.6535 -5.4989 0.7349 33 1 4.0191 -4.1261 0.6916 34 1 4.1104 -3.2908 -0.9211 35 1 2.3743 -5.9451 -2.8748 36 1 2.4570 -4.1719 -2.7378 37 1 4.2914 -5.0584 -4.1667 38 1 4.9300 -4.2825 -2.6973 39 1 6.0833 -6.4134 -3.0655 40 1 4.5235 -7.2710 -3.1331 41 1 7.2450 -7.6237 2.3817 42 1 3.1874 -7.3692 -0.7399 43 1 3.9745 -6.4395 0.5631 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981592796.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:37:30 Heat of formation + Delta-G solvation = 17.666499 kcal Electronic energy + Delta-G solvation = -22587.182559 eV Core-core repulsion = 19440.737478 eV Total energy + Delta-G solvation = -3146.445081 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.90945 -39.93808 -37.65813 -36.23791 -34.64390 -32.58131 -32.07163 -29.31438 -28.66137 -27.34324 -27.20062 -26.79874 -24.27640 -22.38606 -21.17599 -19.78716 -19.05476 -18.73474 -18.14184 -17.26189 -16.67641 -16.45709 -15.87921 -15.53835 -15.38256 -15.30403 -14.87245 -14.58713 -14.46030 -14.19156 -14.08003 -13.66262 -13.43566 -13.35508 -13.26014 -13.15713 -12.79926 -12.69815 -12.48503 -12.43532 -12.14120 -11.99235 -11.71773 -11.57638 -11.30290 -11.13172 -10.69542 -10.54804 -10.22220 -9.60952 -8.90275 -8.12170 -5.41260 0.37342 1.30726 1.44024 1.50791 1.84476 2.25134 2.43780 2.99707 3.26265 3.50600 3.52350 3.78216 3.89655 3.94106 4.16069 4.19269 4.30434 4.38112 4.47301 4.53869 4.55390 4.57606 4.66067 4.67915 4.68912 4.74752 4.83434 4.86462 4.89679 4.98038 5.05130 5.09754 5.15334 5.17500 5.23522 5.34973 5.51996 5.56379 5.63189 5.89571 6.17202 6.70248 6.94626 7.14518 7.66751 8.07120 9.07379 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.021783 B = 0.004888 C = 0.004752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1285.102807 B = 5726.657464 C = 5890.574605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.024 4.024 3 C -0.123 4.123 4 C -0.251 4.251 5 C 0.556 3.444 6 O -0.583 6.583 7 N -0.638 5.638 8 C 0.112 3.888 9 C -0.098 4.098 10 C 0.128 3.872 11 C -0.077 4.077 12 C -0.124 4.124 13 C 0.142 3.858 14 N -0.615 5.615 15 C -0.238 4.238 16 H 0.058 0.942 17 C -0.032 4.032 18 N -0.956 5.956 19 Si 0.933 3.067 20 H -0.279 1.279 21 H -0.256 1.256 22 H -0.316 1.316 23 C 0.141 3.859 24 H 0.063 0.937 25 H 0.080 0.920 26 H 0.063 0.937 27 H 0.094 0.906 28 H 0.088 0.912 29 H 0.076 0.924 30 H 0.134 0.866 31 H 0.091 0.909 32 H 0.080 0.920 33 H 0.071 0.929 34 H 0.091 0.909 35 H 0.075 0.925 36 H 0.066 0.934 37 H 0.089 0.911 38 H 0.054 0.946 39 H 0.056 0.944 40 H 0.035 0.965 41 H 0.259 0.741 42 H 0.038 0.962 43 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.447 13.108 -7.167 18.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.026 4.026 3 C -0.179 4.179 4 C -0.271 4.271 5 C 0.352 3.648 6 O -0.466 6.466 7 N -0.372 5.372 8 C -0.011 4.011 9 C -0.101 4.101 10 C 0.005 3.995 11 C -0.114 4.114 12 C -0.163 4.163 13 C 0.017 3.983 14 N -0.339 5.339 15 C -0.368 4.368 16 H 0.075 0.925 17 C -0.226 4.226 18 N -0.603 5.603 19 Si 0.762 3.238 20 H -0.206 1.206 21 H -0.180 1.180 22 H -0.246 1.246 23 C 0.015 3.985 24 H 0.081 0.919 25 H 0.099 0.901 26 H 0.082 0.918 27 H 0.113 0.887 28 H 0.107 0.893 29 H 0.095 0.905 30 H 0.152 0.848 31 H 0.109 0.891 32 H 0.098 0.902 33 H 0.090 0.910 34 H 0.110 0.890 35 H 0.093 0.907 36 H 0.084 0.916 37 H 0.107 0.893 38 H 0.073 0.927 39 H 0.075 0.925 40 H 0.053 0.947 41 H 0.068 0.932 42 H 0.055 0.945 43 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -12.091 13.239 -7.010 19.251 hybrid contribution -0.028 -1.094 0.985 1.473 sum -12.119 12.145 -6.025 18.184 Atomic orbital electron populations 1.20981 0.91272 1.02106 1.02581 1.22921 0.96816 0.95398 0.87442 1.21090 1.00173 0.92536 1.04149 1.22360 1.00641 0.90972 1.13148 1.18749 0.86548 0.84070 0.75470 1.90721 1.14951 1.87615 1.53352 1.50074 1.09704 1.05426 1.71981 1.23218 0.98152 0.79482 1.00209 1.22499 0.94422 0.95490 0.97666 1.23125 0.82072 0.94364 0.99908 1.21091 0.97583 1.02143 0.90586 1.21829 0.95402 0.98233 1.00821 1.21012 0.99313 0.95907 0.82040 1.44462 1.02008 1.84728 1.02723 1.18869 0.86787 1.30572 1.00542 0.92457 1.25741 0.98922 1.00795 0.97157 1.69950 1.35148 1.46541 1.08643 0.86140 0.80158 0.79388 0.78068 1.20601 1.18009 1.24570 1.21235 0.86729 0.94902 0.95625 0.91873 0.90146 0.91842 0.88727 0.89317 0.90494 0.84810 0.89088 0.90211 0.91036 0.89042 0.90668 0.91575 0.89275 0.92684 0.92549 0.94662 0.93177 0.94460 0.93080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.49 8.33 71.23 0.59 -1.89 16 2 C -0.02 -0.50 6.11 -17.62 -0.11 -0.61 16 3 C -0.12 -1.61 9.98 71.23 0.71 -0.90 16 4 C -0.25 -6.41 9.41 23.43 0.22 -6.19 16 5 C 0.56 17.88 7.95 86.57 0.69 18.57 16 6 O -0.58 -21.39 13.83 -4.08 -0.06 -21.45 16 7 N -0.64 -19.97 3.45 -847.52 -2.93 -22.89 16 8 C 0.11 3.39 7.97 86.29 0.69 4.07 16 9 C -0.10 -3.09 0.87 -52.03 -0.05 -3.13 16 10 C 0.13 4.03 7.45 86.31 0.64 4.67 16 11 C -0.08 -2.03 5.03 30.53 0.15 -1.88 16 12 C -0.12 -3.37 5.99 30.55 0.18 -3.19 16 13 C 0.14 4.91 6.42 86.20 0.55 5.47 16 14 N -0.62 -26.71 2.81 -700.45 -1.97 -28.68 16 15 C -0.24 -12.76 10.06 84.03 0.85 -11.91 16 16 H 0.06 3.36 8.05 -2.91 -0.02 3.34 16 17 C -0.03 -1.78 5.24 84.86 0.44 -1.33 16 18 N -0.96 -58.52 13.97 21.65 0.30 -58.22 16 19 Si 0.93 45.02 24.31 68.60 1.67 46.68 16 20 H -0.28 -12.82 6.70 99.48 0.67 -12.16 16 21 H -0.26 -11.66 6.38 99.48 0.63 -11.03 16 22 H -0.32 -15.84 7.11 99.48 0.71 -15.13 16 23 C 0.14 5.52 3.35 86.19 0.29 5.80 16 24 H 0.06 1.66 7.14 -2.39 -0.02 1.65 16 25 H 0.08 1.24 7.94 -2.39 -0.02 1.23 16 26 H 0.06 1.61 7.31 -2.39 -0.02 1.60 16 27 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 28 H 0.09 0.88 8.04 -2.38 -0.02 0.86 16 29 H 0.08 0.96 8.07 -2.39 -0.02 0.94 16 30 H 0.13 3.09 7.91 -2.91 -0.02 3.06 16 31 H 0.09 2.52 8.09 -2.39 -0.02 2.50 16 32 H 0.08 2.44 8.09 -2.39 -0.02 2.42 16 33 H 0.07 2.54 7.97 -2.39 -0.02 2.52 16 34 H 0.09 2.66 7.36 -2.39 -0.02 2.65 16 35 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 36 H 0.07 1.67 8.02 -2.39 -0.02 1.65 16 37 H 0.09 1.92 8.14 -2.38 -0.02 1.90 16 38 H 0.05 1.59 7.36 -2.38 -0.02 1.58 16 39 H 0.06 2.01 7.92 -2.39 -0.02 1.99 16 40 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16 41 H 0.26 15.23 8.31 -92.71 -0.77 14.46 16 42 H 0.04 1.44 6.85 -2.39 -0.02 1.42 16 43 H 0.05 2.26 4.37 -2.39 -0.01 2.25 16 Total: -1.00 -67.13 334.09 3.74 -63.39 By element: Atomic # 1 Polarization: 12.75 SS G_CDS: 0.86 Total: 13.61 kcal Atomic # 6 Polarization: 1.69 SS G_CDS: 5.86 Total: 7.55 kcal Atomic # 7 Polarization: -105.19 SS G_CDS: -4.59 Total: -109.78 kcal Atomic # 8 Polarization: -21.39 SS G_CDS: -0.06 Total: -21.45 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 1.67 Total: 46.68 kcal Total: -67.13 3.74 -63.39 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981592796.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.055 kcal (2) G-P(sol) polarization free energy of solvation -67.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.388 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds