Wall clock time and date at job start Tue Mar 31 2020 00:37:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.32990 * 120.00364 * 2 1 4 4 C 1.47109 * 119.99862 * 352.66934 * 3 2 1 5 5 O 1.21618 * 119.99482 * 352.67274 * 4 3 2 6 6 N 1.34773 * 120.00080 * 172.94183 * 4 3 2 7 7 C 1.46929 * 120.63135 * 4.65691 * 6 4 3 8 8 C 1.52756 * 109.01027 * 233.58241 * 7 6 4 9 9 C 1.53043 * 109.38438 * 305.59226 * 8 7 6 10 10 N 1.46494 * 109.44809 * 181.25481 * 9 8 7 11 11 C 1.36935 * 120.00359 * 84.93906 * 10 9 8 12 12 H 1.08002 * 120.00072 * 359.97438 * 11 10 9 13 13 C 1.38814 * 120.00267 * 179.97438 * 11 10 9 14 14 N 1.31617 * 119.99815 * 359.97438 * 13 11 10 15 15 Si 1.86804 * 120.00027 * 179.97438 * 13 11 10 16 16 H 1.48497 * 109.47088 * 359.97438 * 15 13 11 17 17 H 1.48499 * 109.46882 * 119.99915 * 15 13 11 18 18 H 1.48496 * 109.46963 * 240.00032 * 15 13 11 19 19 C 1.53037 * 109.53798 * 61.23658 * 9 8 7 20 20 C 1.46923 * 120.62947 * 184.93877 * 6 4 3 21 21 C 1.50700 * 119.99730 * 179.97438 * 2 1 3 22 22 C 1.53003 * 117.50205 * 8.74976 * 21 2 1 23 23 C 1.53002 * 117.50283 * 300.08747 * 21 2 1 24 24 H 1.09006 * 109.46458 * 84.48825 * 1 2 3 25 25 H 1.09001 * 109.47238 * 204.48208 * 1 2 3 26 26 H 1.08995 * 109.46942 * 324.48584 * 1 2 3 27 27 H 1.07992 * 120.00476 * 172.67555 * 3 2 1 28 28 H 1.09000 * 109.58261 * 353.42022 * 7 6 4 29 29 H 1.09005 * 109.58327 * 113.83992 * 7 6 4 30 30 H 1.08997 * 109.56594 * 185.55365 * 8 7 6 31 31 H 1.09007 * 109.35922 * 65.49633 * 8 7 6 32 32 H 1.09001 * 109.45517 * 301.21651 * 9 8 7 33 33 H 0.97003 * 120.00252 * 264.93325 * 10 9 8 34 34 H 0.97001 * 120.00156 * 180.02562 * 14 13 11 35 35 H 1.09004 * 109.49513 * 178.68392 * 19 9 8 36 36 H 1.09000 * 109.49636 * 58.59016 * 19 9 8 37 37 H 1.09003 * 109.58655 * 246.15961 * 20 6 4 38 38 H 1.09005 * 109.59099 * 6.43782 * 20 6 4 39 39 H 1.09003 * 115.54748 * 154.42500 * 21 2 1 40 40 H 1.08999 * 117.49378 * 0.02562 * 22 21 2 41 41 H 1.09001 * 117.49381 * 145.01579 * 22 21 2 42 42 H 1.08991 * 117.50448 * 214.98331 * 23 21 2 43 43 H 1.09005 * 117.49808 * 359.97438 * 23 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1721 1.1517 0.0000 4 6 1.4456 2.4205 -0.1626 5 8 0.2591 2.4119 -0.4296 6 7 2.0960 3.5924 -0.0209 7 6 3.5491 3.6208 0.1948 8 6 3.8503 4.4423 1.4470 9 6 3.2070 5.8246 1.3145 10 7 3.5201 6.6241 2.5014 11 6 4.6969 7.3212 2.5665 12 1 5.3945 7.2813 1.7430 13 6 4.9934 8.0792 3.6910 14 7 4.1431 8.1283 4.6944 15 14 6.5991 9.0296 3.7801 16 1 7.3745 8.8094 2.5329 17 1 6.3092 10.4778 3.9342 18 1 7.3903 8.5565 4.9443 19 6 1.6894 5.6729 1.1876 20 6 1.3646 4.8655 -0.0731 21 6 2.2605 -1.3051 0.0006 22 6 1.4521 -2.5877 -0.2053 23 6 2.0245 -2.2567 1.1753 24 1 -0.3632 0.0987 -1.0230 25 1 -0.3634 -0.9353 0.4259 26 1 -0.3633 0.8365 0.5970 27 1 3.2454 1.1555 0.1192 28 1 3.9185 2.6040 0.3289 29 1 4.0373 4.0787 -0.6655 30 1 4.9287 4.5522 1.5607 31 1 3.4418 3.9332 2.3201 32 1 3.5975 6.3233 0.4274 33 1 2.8938 6.6598 3.2413 34 1 4.3500 8.6582 5.4801 35 1 1.2299 6.6588 1.1168 36 1 1.3015 5.1522 2.0631 37 1 1.6710 5.4271 -0.9557 38 1 0.2932 4.6700 -0.1183 39 1 3.2638 -1.2689 -0.4240 40 1 0.3753 -2.4874 -0.3416 41 1 1.9237 -3.3954 -0.7651 42 1 2.8723 -2.8467 1.5232 43 1 1.3246 -1.9385 1.9480 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000990033754.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:37:55 Heat of formation + Delta-G solvation = 17.276467 kcal Electronic energy + Delta-G solvation = -21617.791916 eV Core-core repulsion = 18471.329922 eV Total energy + Delta-G solvation = -3146.461994 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.14508 -38.37442 -37.25744 -34.47241 -33.35163 -32.04193 -30.81507 -29.33877 -27.74487 -25.19680 -23.99019 -22.96728 -22.67856 -22.28524 -20.42272 -19.18441 -18.08868 -17.34505 -17.03417 -16.17913 -15.36432 -15.13834 -14.80858 -14.61529 -13.82710 -13.77295 -13.61716 -13.41035 -13.26027 -13.03646 -12.60325 -12.39876 -12.07699 -11.85704 -11.72969 -11.62735 -11.35536 -11.14981 -10.94746 -10.86462 -10.79595 -10.71277 -10.43071 -10.20393 -9.81216 -9.67795 -9.41661 -9.07063 -8.91255 -8.34046 -6.98422 -5.78664 -3.07777 1.27452 3.18620 3.30295 3.41387 3.46910 3.49289 3.65598 4.26094 4.54998 4.56668 4.62397 4.74113 4.88317 4.95008 5.24125 5.30121 5.35416 5.36529 5.44853 5.48968 5.55024 5.56512 5.69216 5.71192 5.74750 5.77900 5.81796 5.95620 6.02130 6.04396 6.24526 6.36066 6.41205 6.43420 6.46394 6.53683 6.69201 6.92059 7.05448 7.62794 7.67903 8.35263 8.39656 9.50873 10.08752 10.43432 11.44015 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.027921 B = 0.003331 C = 0.003139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1002.595877 B = 8403.509748 C = 8916.769334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.006 4.006 3 C -0.225 4.225 4 C 0.547 3.453 5 O -0.551 6.551 6 N -0.603 5.603 7 C 0.107 3.893 8 C -0.152 4.152 9 C 0.179 3.821 10 N -0.725 5.725 11 C -0.239 4.239 12 H 0.071 0.929 13 C -0.014 4.014 14 N -0.932 5.932 15 Si 0.906 3.094 16 H -0.280 1.280 17 H -0.292 1.292 18 H -0.292 1.292 19 C -0.139 4.139 20 C 0.117 3.883 21 C -0.132 4.132 22 C -0.173 4.173 23 C -0.167 4.167 24 H 0.078 0.922 25 H 0.053 0.947 26 H 0.090 0.910 27 H 0.130 0.870 28 H 0.079 0.921 29 H 0.065 0.935 30 H 0.075 0.925 31 H 0.059 0.941 32 H 0.048 0.952 33 H 0.384 0.616 34 H 0.255 0.745 35 H 0.075 0.925 36 H 0.062 0.938 37 H 0.064 0.936 38 H 0.087 0.913 39 H 0.116 0.884 40 H 0.101 0.899 41 H 0.098 0.902 42 H 0.100 0.900 43 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.387 -18.831 -10.595 22.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.008 4.008 3 C -0.246 4.246 4 C 0.339 3.661 5 O -0.432 6.432 6 N -0.335 5.335 7 C -0.017 4.017 8 C -0.193 4.193 9 C 0.069 3.931 10 N -0.365 5.365 11 C -0.370 4.370 12 H 0.089 0.911 13 C -0.210 4.210 14 N -0.581 5.581 15 Si 0.737 3.263 16 H -0.205 1.205 17 H -0.219 1.219 18 H -0.219 1.219 19 C -0.178 4.178 20 C -0.006 4.006 21 C -0.150 4.150 22 C -0.210 4.210 23 C -0.204 4.204 24 H 0.097 0.903 25 H 0.072 0.928 26 H 0.108 0.892 27 H 0.147 0.853 28 H 0.098 0.902 29 H 0.084 0.916 30 H 0.093 0.907 31 H 0.078 0.922 32 H 0.066 0.934 33 H 0.217 0.783 34 H 0.064 0.936 35 H 0.094 0.906 36 H 0.081 0.919 37 H 0.083 0.917 38 H 0.105 0.895 39 H 0.134 0.866 40 H 0.120 0.880 41 H 0.117 0.883 42 H 0.118 0.882 43 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -4.826 -18.692 -10.756 22.099 hybrid contribution 1.057 0.639 0.504 1.335 sum -3.769 -18.053 -10.252 21.100 Atomic orbital electron populations 1.21134 0.90875 1.02226 1.03592 1.21750 0.96082 0.92282 0.90722 1.22430 1.00619 0.91884 1.09623 1.18453 0.86540 0.84131 0.77016 1.90719 1.15667 1.87406 1.49433 1.48036 1.08735 1.05895 1.70831 1.21831 0.79454 1.01214 0.99161 1.22600 1.02349 0.98436 0.95902 1.20162 0.91275 0.90025 0.91657 1.42449 1.22060 1.54989 1.16991 1.19280 0.95754 1.20922 1.01017 0.91120 1.24755 0.98510 1.00996 0.96748 1.69673 1.36035 1.44973 1.07377 0.86135 0.83203 0.79659 0.77300 1.20549 1.21881 1.21902 1.22205 0.98457 0.99967 0.97138 1.21584 0.97572 0.83263 0.98138 1.21278 1.00134 0.88769 1.04827 1.23074 1.00469 0.97673 0.99747 1.23000 1.03726 1.01962 0.91681 0.90316 0.92818 0.89199 0.85268 0.90239 0.91623 0.90679 0.92220 0.93444 0.78278 0.93550 0.90594 0.91904 0.91747 0.89451 0.86647 0.88026 0.88347 0.88208 0.88348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.38 7.89 36.01 0.28 -1.09 16 2 C -0.01 -0.07 5.81 -101.17 -0.59 -0.66 16 3 C -0.23 -2.75 8.98 -37.80 -0.34 -3.09 16 4 C 0.55 8.20 7.47 -12.66 -0.09 8.11 16 5 O -0.55 -9.44 12.76 5.26 0.07 -9.37 16 6 N -0.60 -8.82 2.98 -174.42 -0.52 -9.34 16 7 C 0.11 1.43 6.32 -3.93 -0.02 1.40 16 8 C -0.15 -2.56 5.64 -26.83 -0.15 -2.71 16 9 C 0.18 3.45 2.73 -67.89 -0.19 3.26 16 10 N -0.72 -17.86 5.12 -53.39 -0.27 -18.14 16 11 C -0.24 -6.49 9.93 -15.06 -0.15 -6.64 16 12 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 13 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 14 N -0.93 -28.03 13.06 55.49 0.72 -27.30 16 15 Si 0.91 22.14 29.55 -169.99 -5.02 17.11 16 16 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 17 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 18 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 19 C -0.14 -2.33 5.55 -26.61 -0.15 -2.48 16 20 C 0.12 1.74 6.42 -3.71 -0.02 1.72 16 21 C -0.13 -1.13 6.00 -91.77 -0.55 -1.68 16 22 C -0.17 -1.22 9.77 -26.69 -0.26 -1.48 16 23 C -0.17 -1.24 10.10 -26.69 -0.27 -1.51 16 24 H 0.08 0.92 8.02 -51.93 -0.42 0.50 16 25 H 0.05 0.49 6.31 -51.93 -0.33 0.16 16 26 H 0.09 1.22 6.19 -51.93 -0.32 0.90 16 27 H 0.13 1.35 5.89 -52.49 -0.31 1.04 16 28 H 0.08 0.90 5.31 -51.93 -0.28 0.62 16 29 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.07 1.34 8.14 -51.93 -0.42 0.91 16 31 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 32 H 0.05 0.93 8.08 -51.93 -0.42 0.51 16 33 H 0.38 10.18 7.80 -40.82 -0.32 9.86 16 34 H 0.25 7.41 8.31 -40.82 -0.34 7.07 16 35 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 36 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 37 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.09 1.33 7.03 -51.93 -0.37 0.96 16 39 H 0.12 0.88 8.14 -51.93 -0.42 0.46 16 40 H 0.10 0.71 6.42 -51.93 -0.33 0.37 16 41 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 341.51 15.07 5.15 5.15 Total: -1.00 -31.10 341.51 -9.34 -40.44 By element: Atomic # 1 Polarization: 15.65 SS G_CDS: -6.86 Total: 8.79 kcal Atomic # 6 Polarization: -4.75 SS G_CDS: -2.60 Total: -7.35 kcal Atomic # 7 Polarization: -54.71 SS G_CDS: -0.07 Total: -54.77 kcal Atomic # 8 Polarization: -9.44 SS G_CDS: 0.07 Total: -9.37 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -31.10 -9.34 -40.44 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000990033754.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.714 kcal (2) G-P(sol) polarization free energy of solvation -31.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.438 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds