Wall clock time and date at job start Tue Mar 31 2020 00:37:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.32990 * 120.00364 * 2 1 4 4 C 1.47109 * 119.99862 * 352.66934 * 3 2 1 5 5 O 1.21618 * 119.99482 * 352.67274 * 4 3 2 6 6 N 1.34773 * 120.00080 * 172.94183 * 4 3 2 7 7 C 1.46929 * 120.63135 * 4.65691 * 6 4 3 8 8 C 1.52756 * 109.01027 * 233.58241 * 7 6 4 9 9 C 1.53043 * 109.38438 * 305.59226 * 8 7 6 10 10 N 1.46494 * 109.44809 * 181.25481 * 9 8 7 11 11 C 1.36935 * 120.00359 * 84.93906 * 10 9 8 12 12 H 1.08002 * 120.00072 * 359.97438 * 11 10 9 13 13 C 1.38814 * 120.00267 * 179.97438 * 11 10 9 14 14 N 1.31617 * 119.99815 * 359.97438 * 13 11 10 15 15 Si 1.86804 * 120.00027 * 179.97438 * 13 11 10 16 16 H 1.48497 * 109.47088 * 359.97438 * 15 13 11 17 17 H 1.48499 * 109.46882 * 119.99915 * 15 13 11 18 18 H 1.48496 * 109.46963 * 240.00032 * 15 13 11 19 19 C 1.53037 * 109.53798 * 61.23658 * 9 8 7 20 20 C 1.46923 * 120.62947 * 184.93877 * 6 4 3 21 21 C 1.50700 * 119.99730 * 179.97438 * 2 1 3 22 22 C 1.53003 * 117.50205 * 8.74976 * 21 2 1 23 23 C 1.53002 * 117.50283 * 300.08747 * 21 2 1 24 24 H 1.09006 * 109.46458 * 84.48825 * 1 2 3 25 25 H 1.09001 * 109.47238 * 204.48208 * 1 2 3 26 26 H 1.08995 * 109.46942 * 324.48584 * 1 2 3 27 27 H 1.07992 * 120.00476 * 172.67555 * 3 2 1 28 28 H 1.09000 * 109.58261 * 353.42022 * 7 6 4 29 29 H 1.09005 * 109.58327 * 113.83992 * 7 6 4 30 30 H 1.08997 * 109.56594 * 185.55365 * 8 7 6 31 31 H 1.09007 * 109.35922 * 65.49633 * 8 7 6 32 32 H 1.09001 * 109.45517 * 301.21651 * 9 8 7 33 33 H 0.97003 * 120.00252 * 264.93325 * 10 9 8 34 34 H 0.97001 * 120.00156 * 180.02562 * 14 13 11 35 35 H 1.09004 * 109.49513 * 178.68392 * 19 9 8 36 36 H 1.09000 * 109.49636 * 58.59016 * 19 9 8 37 37 H 1.09003 * 109.58655 * 246.15961 * 20 6 4 38 38 H 1.09005 * 109.59099 * 6.43782 * 20 6 4 39 39 H 1.09003 * 115.54748 * 154.42500 * 21 2 1 40 40 H 1.08999 * 117.49378 * 0.02562 * 22 21 2 41 41 H 1.09001 * 117.49381 * 145.01579 * 22 21 2 42 42 H 1.08991 * 117.50448 * 214.98331 * 23 21 2 43 43 H 1.09005 * 117.49808 * 359.97438 * 23 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1721 1.1517 0.0000 4 6 1.4456 2.4205 -0.1626 5 8 0.2591 2.4119 -0.4296 6 7 2.0960 3.5924 -0.0209 7 6 3.5491 3.6208 0.1948 8 6 3.8503 4.4423 1.4470 9 6 3.2070 5.8246 1.3145 10 7 3.5201 6.6241 2.5014 11 6 4.6969 7.3212 2.5665 12 1 5.3945 7.2813 1.7430 13 6 4.9934 8.0792 3.6910 14 7 4.1431 8.1283 4.6944 15 14 6.5991 9.0296 3.7801 16 1 7.3745 8.8094 2.5329 17 1 6.3092 10.4778 3.9342 18 1 7.3903 8.5565 4.9443 19 6 1.6894 5.6729 1.1876 20 6 1.3646 4.8655 -0.0731 21 6 2.2605 -1.3051 0.0006 22 6 1.4521 -2.5877 -0.2053 23 6 2.0245 -2.2567 1.1753 24 1 -0.3632 0.0987 -1.0230 25 1 -0.3634 -0.9353 0.4259 26 1 -0.3633 0.8365 0.5970 27 1 3.2454 1.1555 0.1192 28 1 3.9185 2.6040 0.3289 29 1 4.0373 4.0787 -0.6655 30 1 4.9287 4.5522 1.5607 31 1 3.4418 3.9332 2.3201 32 1 3.5975 6.3233 0.4274 33 1 2.8938 6.6598 3.2413 34 1 4.3500 8.6582 5.4801 35 1 1.2299 6.6588 1.1168 36 1 1.3015 5.1522 2.0631 37 1 1.6710 5.4271 -0.9557 38 1 0.2932 4.6700 -0.1183 39 1 3.2638 -1.2689 -0.4240 40 1 0.3753 -2.4874 -0.3416 41 1 1.9237 -3.3954 -0.7651 42 1 2.8723 -2.8467 1.5232 43 1 1.3246 -1.9385 1.9480 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000990033754.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:37:54 Heat of formation + Delta-G solvation = -0.512942 kcal Electronic energy + Delta-G solvation = -21618.563323 eV Core-core repulsion = 18471.329922 eV Total energy + Delta-G solvation = -3147.233401 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.29411 -39.29106 -38.41861 -36.14654 -34.24806 -33.79802 -32.10629 -31.05506 -28.76887 -26.67693 -25.24713 -24.37379 -23.62973 -23.19275 -21.72221 -20.36818 -19.15641 -18.95205 -18.39644 -16.99294 -16.73625 -16.39184 -16.25588 -15.54104 -15.41919 -15.33519 -14.98371 -14.73667 -14.46011 -14.01377 -13.80251 -13.59612 -13.29457 -13.18501 -12.88038 -12.82305 -12.59058 -12.43424 -12.23301 -12.15167 -12.09167 -11.95671 -11.81976 -11.65939 -11.31875 -11.30799 -10.92001 -10.51710 -9.98627 -9.48841 -9.00702 -7.93151 -5.22053 0.34310 1.48584 1.48970 1.58990 2.06507 2.26117 2.57139 3.02437 3.40007 3.45522 3.80847 3.82203 3.87513 3.95434 4.04759 4.08982 4.16624 4.20473 4.27282 4.39538 4.43118 4.62155 4.67769 4.75958 4.80983 4.83312 4.84446 4.87390 4.99746 5.01669 5.06602 5.13494 5.16813 5.26870 5.31715 5.49249 5.53085 5.54510 5.56286 5.68250 6.28589 6.49431 7.21223 7.34417 8.09989 8.33224 9.30830 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.027921 B = 0.003331 C = 0.003139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1002.595877 B = 8403.509748 C = 8916.769334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.005 3.995 3 C -0.244 4.244 4 C 0.540 3.460 5 O -0.580 6.580 6 N -0.607 5.607 7 C 0.115 3.885 8 C -0.141 4.141 9 C 0.173 3.827 10 N -0.739 5.739 11 C -0.233 4.233 12 H 0.080 0.920 13 C -0.080 4.080 14 N -0.973 5.973 15 Si 0.972 3.028 16 H -0.263 1.263 17 H -0.297 1.297 18 H -0.296 1.296 19 C -0.127 4.127 20 C 0.124 3.876 21 C -0.145 4.145 22 C -0.165 4.165 23 C -0.164 4.164 24 H 0.073 0.927 25 H 0.074 0.926 26 H 0.063 0.937 27 H 0.150 0.850 28 H 0.107 0.893 29 H 0.084 0.916 30 H 0.067 0.933 31 H 0.043 0.957 32 H 0.050 0.950 33 H 0.370 0.630 34 H 0.249 0.751 35 H 0.072 0.928 36 H 0.048 0.952 37 H 0.081 0.919 38 H 0.083 0.917 39 H 0.129 0.871 40 H 0.101 0.899 41 H 0.116 0.884 42 H 0.115 0.885 43 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.082 -20.776 -12.170 24.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.003 3.997 3 C -0.264 4.264 4 C 0.334 3.666 5 O -0.463 6.463 6 N -0.338 5.338 7 C -0.008 4.008 8 C -0.181 4.181 9 C 0.065 3.935 10 N -0.378 5.378 11 C -0.365 4.365 12 H 0.098 0.902 13 C -0.272 4.272 14 N -0.624 5.624 15 Si 0.801 3.199 16 H -0.187 1.187 17 H -0.224 1.224 18 H -0.223 1.223 19 C -0.166 4.166 20 C 0.001 3.999 21 C -0.163 4.163 22 C -0.201 4.201 23 C -0.201 4.201 24 H 0.091 0.909 25 H 0.093 0.907 26 H 0.082 0.918 27 H 0.167 0.833 28 H 0.125 0.875 29 H 0.102 0.898 30 H 0.086 0.914 31 H 0.062 0.938 32 H 0.068 0.932 33 H 0.201 0.799 34 H 0.058 0.942 35 H 0.090 0.910 36 H 0.066 0.934 37 H 0.099 0.901 38 H 0.101 0.899 39 H 0.147 0.853 40 H 0.119 0.881 41 H 0.134 0.866 42 H 0.133 0.867 43 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -3.507 -20.669 -12.386 24.350 hybrid contribution 0.552 1.157 0.953 1.597 sum -2.955 -19.513 -11.434 22.808 Atomic orbital electron populations 1.21070 0.91517 1.02217 1.02867 1.22020 0.95914 0.93365 0.88430 1.22443 1.01458 0.90764 1.11766 1.18965 0.86367 0.84977 0.76333 1.90708 1.16970 1.87839 1.50811 1.48110 1.09198 1.05721 1.70810 1.21849 0.78890 1.02291 0.97735 1.22377 1.01314 0.97144 0.97311 1.20413 0.92935 0.90573 0.89590 1.42684 1.21214 1.55786 1.18124 1.19676 0.96281 1.19793 1.00749 0.90227 1.25570 1.01893 1.02858 0.96834 1.69835 1.38088 1.46468 1.08010 0.85090 0.79521 0.77674 0.77605 1.18674 1.22405 1.22298 1.22054 0.96693 1.00080 0.97781 1.21471 0.97554 0.83491 0.97391 1.21345 1.00782 0.87862 1.06345 1.23182 1.00438 0.97008 0.99492 1.23082 1.04156 1.01339 0.91537 0.90860 0.90689 0.91831 0.83263 0.87476 0.89821 0.91424 0.93801 0.93241 0.79904 0.94190 0.90968 0.93355 0.90079 0.89900 0.85304 0.88100 0.86595 0.86703 0.88992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.63 7.89 71.24 0.56 -2.06 16 2 C 0.00 0.09 5.81 -17.62 -0.10 -0.01 16 3 C -0.24 -5.52 8.98 23.43 0.21 -5.31 16 4 C 0.54 15.69 7.47 86.57 0.65 16.34 16 5 O -0.58 -19.87 12.76 -4.09 -0.05 -19.92 16 6 N -0.61 -16.92 2.98 -823.99 -2.45 -19.37 16 7 C 0.11 2.81 6.32 86.22 0.54 3.36 16 8 C -0.14 -4.61 5.64 30.53 0.17 -4.44 16 9 C 0.17 6.60 2.73 45.02 0.12 6.73 16 10 N -0.74 -36.87 5.12 -322.82 -1.65 -38.52 16 11 C -0.23 -12.67 9.93 84.03 0.83 -11.83 16 12 H 0.08 4.10 7.83 -2.91 -0.02 4.08 16 13 C -0.08 -4.54 5.50 84.86 0.47 -4.08 16 14 N -0.97 -59.80 13.06 21.65 0.28 -59.51 16 15 Si 0.97 45.70 29.55 68.60 2.03 47.73 16 16 H -0.26 -11.43 7.11 99.48 0.71 -10.72 16 17 H -0.30 -14.07 7.11 99.48 0.71 -13.36 16 18 H -0.30 -13.96 7.11 99.48 0.71 -13.26 16 19 C -0.13 -4.30 5.55 30.67 0.17 -4.13 16 20 C 0.12 3.58 6.42 86.36 0.55 4.14 16 21 C -0.15 -2.07 6.00 -11.54 -0.07 -2.14 16 22 C -0.16 -1.82 9.77 30.62 0.30 -1.52 16 23 C -0.16 -1.98 10.10 30.62 0.31 -1.67 16 24 H 0.07 1.68 8.02 -2.38 -0.02 1.66 16 25 H 0.07 1.26 6.31 -2.39 -0.02 1.25 16 26 H 0.06 1.75 6.19 -2.39 -0.01 1.74 16 27 H 0.15 2.67 5.89 -2.91 -0.02 2.65 16 28 H 0.11 2.07 5.31 -2.39 -0.01 2.06 16 29 H 0.08 1.81 8.14 -2.38 -0.02 1.79 16 30 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 31 H 0.04 1.57 8.14 -2.38 -0.02 1.55 16 32 H 0.05 1.88 8.08 -2.39 -0.02 1.86 16 33 H 0.37 20.23 7.80 -92.71 -0.72 19.51 16 34 H 0.25 14.88 8.31 -92.71 -0.77 14.11 16 35 H 0.07 2.47 8.14 -2.38 -0.02 2.45 16 36 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 37 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 38 H 0.08 2.50 7.03 -2.38 -0.02 2.49 16 39 H 0.13 1.52 8.14 -2.39 -0.02 1.50 16 40 H 0.10 1.13 6.42 -2.39 -0.02 1.12 16 41 H 0.12 0.91 8.14 -2.39 -0.02 0.89 16 42 H 0.11 1.05 8.14 -2.39 -0.02 1.03 16 43 H 0.09 1.24 8.14 -2.38 -0.02 1.22 16 Total: -1.00 -67.67 341.51 3.15 -64.51 By element: Atomic # 1 Polarization: 31.43 SS G_CDS: 0.28 Total: 31.71 kcal Atomic # 6 Polarization: -11.34 SS G_CDS: 4.72 Total: -6.62 kcal Atomic # 7 Polarization: -113.59 SS G_CDS: -3.82 Total: -117.41 kcal Atomic # 8 Polarization: -19.87 SS G_CDS: -0.05 Total: -19.92 kcal Atomic # 14 Polarization: 45.70 SS G_CDS: 2.03 Total: 47.73 kcal Total: -67.67 3.15 -64.51 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000990033754.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.002 kcal (2) G-P(sol) polarization free energy of solvation -67.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds