Wall clock time and date at job start Tue Mar 31 2020 00:38:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.32995 * 119.99768 * 2 1 4 4 C 1.47102 * 120.00354 * 352.68645 * 3 2 1 5 5 O 1.21620 * 119.99940 * 353.16312 * 4 3 2 6 6 N 1.34775 * 120.00663 * 173.16584 * 4 3 2 7 7 C 1.46935 * 120.62440 * 356.30489 * 6 4 3 8 8 C 1.53194 * 108.77113 * 126.41844 * 7 6 4 9 9 C 1.53033 * 109.31417 * 54.63183 * 8 7 6 10 10 C 1.53041 * 109.54219 * 298.63727 * 9 8 7 11 11 H 1.09002 * 109.49309 * 301.41061 * 10 9 8 12 12 N 1.46500 * 109.52496 * 181.33404 * 10 9 8 13 13 C 1.36930 * 119.99770 * 155.07897 * 12 10 9 14 14 H 1.08005 * 120.00549 * 359.97438 * 13 12 10 15 15 C 1.38814 * 119.99948 * 179.97438 * 13 12 10 16 16 N 1.31622 * 120.00152 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 120.00296 * 180.02562 * 15 13 12 18 18 H 1.48496 * 109.47738 * 89.99738 * 17 15 13 19 19 H 1.48502 * 109.47212 * 209.99962 * 17 15 13 20 20 H 1.48501 * 109.47047 * 329.99422 * 17 15 13 21 21 C 1.46922 * 120.63381 * 176.33194 * 6 4 3 22 22 C 1.50701 * 120.00164 * 179.97438 * 2 1 3 23 23 C 1.52996 * 117.49728 * 8.62163 * 22 2 1 24 24 C 1.52999 * 117.49820 * 299.99800 * 22 2 1 25 25 H 1.08995 * 109.47225 * 83.99184 * 1 2 3 26 26 H 1.08999 * 109.46680 * 203.99116 * 1 2 3 27 27 H 1.09003 * 109.46808 * 323.98914 * 1 2 3 28 28 H 1.08004 * 120.00163 * 172.69212 * 3 2 1 29 29 H 1.08996 * 109.58477 * 246.20590 * 7 6 4 30 30 H 1.08997 * 109.58453 * 6.62819 * 7 6 4 31 31 H 1.09001 * 109.49543 * 174.59074 * 8 7 6 32 32 H 1.09005 * 109.49542 * 294.64850 * 8 7 6 33 33 H 1.08997 * 109.46032 * 178.61181 * 9 8 7 34 34 H 1.09003 * 109.46012 * 58.65439 * 9 8 7 35 35 H 0.96999 * 119.99893 * 335.07357 * 12 10 9 36 36 H 0.96991 * 120.00361 * 180.02562 * 16 15 13 37 37 H 1.09004 * 109.58381 * 113.79789 * 21 6 4 38 38 H 1.08995 * 109.58700 * 353.37241 * 21 6 4 39 39 H 1.08997 * 115.54824 * 154.32697 * 22 2 1 40 40 H 1.09005 * 117.50256 * 359.97438 * 23 22 2 41 41 H 1.09004 * 117.49844 * 145.01755 * 23 22 2 42 42 H 1.08995 * 117.49874 * 214.97612 * 24 22 2 43 43 H 1.09001 * 117.49587 * 0.02562 * 24 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1720 1.1518 0.0000 4 6 1.4455 2.4206 -0.1622 5 8 0.2570 2.4121 -0.4201 6 7 2.0968 3.5925 -0.0250 7 6 3.5129 3.6205 0.3657 8 6 4.2913 4.4491 -0.6611 9 6 3.6471 5.8313 -0.7892 10 6 2.2061 5.6809 -1.2823 11 1 2.2023 5.1660 -2.2431 12 7 1.6000 7.0058 -1.4351 13 6 0.5601 7.1864 -2.3075 14 1 0.1869 6.3523 -2.8831 15 6 -0.0146 8.4417 -2.4519 16 7 0.4398 9.4583 -1.7500 17 14 -1.4337 8.6881 -3.6414 18 1 -2.7185 8.4550 -2.9343 19 1 -1.4031 10.0764 -4.1677 20 1 -1.3075 7.7289 -4.7680 21 6 1.4041 4.8662 -0.2625 22 6 2.2606 -1.3051 0.0006 23 6 1.4518 -2.5878 -0.2023 24 6 2.0262 -2.2556 1.1764 25 1 -0.3633 0.1076 -1.0220 26 1 -0.3633 -0.9389 0.4179 27 1 -0.3633 0.8313 0.6042 28 1 3.2454 1.1557 0.1190 29 1 3.6110 4.0746 1.3517 30 1 3.9058 2.6041 0.3885 31 1 5.3248 4.5584 -0.3323 32 1 4.2683 3.9456 -1.6276 33 1 4.2137 6.4315 -1.5010 34 1 3.6485 6.3241 0.1831 35 1 1.9353 7.7551 -0.9183 36 1 0.0380 10.3353 -1.8507 37 1 1.3303 5.4219 0.6723 38 1 0.4057 4.6717 -0.6542 39 1 3.2632 -1.2692 -0.4255 40 1 0.3746 -2.4879 -0.3358 41 1 1.9222 -3.3962 -0.7621 42 1 2.8745 -2.8454 1.5235 43 1 1.3266 -1.9371 1.9492 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000998630624.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:38:39 Heat of formation + Delta-G solvation = 17.903840 kcal Electronic energy + Delta-G solvation = -21769.996836 eV Core-core repulsion = 18623.562046 eV Total energy + Delta-G solvation = -3146.434789 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.01554 -38.34874 -37.16290 -34.43539 -33.23876 -32.24619 -31.10996 -28.64282 -27.56033 -25.36267 -24.06240 -23.39439 -22.65966 -21.84548 -20.39454 -19.10982 -18.01364 -17.22470 -17.05942 -16.16330 -15.38468 -14.94509 -14.68872 -14.49778 -14.12740 -13.88638 -13.45434 -13.26009 -13.17088 -12.94513 -12.61576 -12.38538 -12.13248 -12.02792 -11.70268 -11.53593 -11.21324 -11.11709 -10.97922 -10.81743 -10.71688 -10.56848 -10.52001 -10.17896 -9.79178 -9.68391 -9.27470 -9.02492 -8.98764 -8.19612 -6.96842 -5.76542 -3.06089 1.35027 3.32017 3.41673 3.46882 3.51947 3.53705 3.69084 4.29221 4.55896 4.60303 4.63763 4.75736 4.89637 4.95036 5.13729 5.17719 5.29714 5.30602 5.49571 5.51588 5.59050 5.61085 5.71949 5.75532 5.77712 5.82996 5.87723 5.93873 6.07451 6.10512 6.20932 6.26920 6.38803 6.45839 6.47099 6.58921 6.83402 6.87976 7.07754 7.73909 7.80083 8.41526 8.53853 9.53519 10.07965 10.43366 11.45861 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.023569 B = 0.003807 C = 0.003387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1187.725667 B = 7353.617619 C = 8265.141077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.009 4.009 3 C -0.224 4.224 4 C 0.541 3.459 5 O -0.543 6.543 6 N -0.604 5.604 7 C 0.107 3.893 8 C -0.131 4.131 9 C -0.126 4.126 10 C 0.168 3.832 11 H 0.050 0.950 12 N -0.719 5.719 13 C -0.241 4.241 14 H 0.071 0.929 15 C -0.011 4.011 16 N -0.933 5.933 17 Si 0.907 3.093 18 H -0.289 1.289 19 H -0.291 1.291 20 H -0.281 1.281 21 C 0.093 3.907 22 C -0.131 4.131 23 C -0.173 4.173 24 C -0.168 4.168 25 H 0.080 0.920 26 H 0.052 0.948 27 H 0.090 0.910 28 H 0.127 0.873 29 H 0.066 0.934 30 H 0.081 0.919 31 H 0.070 0.930 32 H 0.065 0.935 33 H 0.066 0.934 34 H 0.060 0.940 35 H 0.385 0.615 36 H 0.255 0.745 37 H 0.059 0.941 38 H 0.090 0.910 39 H 0.115 0.885 40 H 0.102 0.898 41 H 0.098 0.902 42 H 0.098 0.902 43 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.728 -21.348 6.491 23.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.011 4.011 3 C -0.245 4.245 4 C 0.332 3.668 5 O -0.423 6.423 6 N -0.336 5.336 7 C -0.017 4.017 8 C -0.169 4.169 9 C -0.164 4.164 10 C 0.057 3.943 11 H 0.068 0.932 12 N -0.359 5.359 13 C -0.372 4.372 14 H 0.089 0.911 15 C -0.207 4.207 16 N -0.581 5.581 17 Si 0.738 3.262 18 H -0.216 1.216 19 H -0.218 1.218 20 H -0.207 1.207 21 C -0.031 4.031 22 C -0.149 4.149 23 C -0.210 4.210 24 C -0.205 4.205 25 H 0.098 0.902 26 H 0.071 0.929 27 H 0.108 0.892 28 H 0.145 0.855 29 H 0.084 0.916 30 H 0.099 0.901 31 H 0.089 0.911 32 H 0.084 0.916 33 H 0.085 0.915 34 H 0.079 0.921 35 H 0.219 0.781 36 H 0.065 0.935 37 H 0.078 0.922 38 H 0.108 0.892 39 H 0.133 0.867 40 H 0.120 0.880 41 H 0.116 0.884 42 H 0.117 0.883 43 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 7.963 -21.293 6.207 23.565 hybrid contribution -0.446 0.564 -0.414 0.830 sum 7.517 -20.728 5.793 22.797 Atomic orbital electron populations 1.21134 0.90830 1.02031 1.03871 1.21749 0.96140 0.92215 0.90954 1.22446 1.00276 0.92132 1.09617 1.18472 0.86749 0.84053 0.77550 1.90757 1.15169 1.87216 1.49158 1.48159 1.11222 1.06615 1.67634 1.21782 0.81091 1.00784 0.98011 1.21895 0.98710 0.96824 0.99512 1.21817 0.97189 0.95737 1.01681 1.20495 0.90097 0.87945 0.95749 0.93218 1.42375 1.39431 1.04434 1.49687 1.19277 1.08009 0.94396 1.15543 0.91069 1.24743 0.99973 0.95790 1.00234 1.69660 1.44050 1.00278 1.44137 0.86185 0.82446 0.76925 0.80647 1.21607 1.21781 1.20683 1.22731 0.98484 0.81788 1.00102 1.21268 1.00126 0.88862 1.04618 1.23068 1.00582 0.97698 0.99612 1.22979 1.03667 1.02099 0.91743 0.90162 0.92932 0.89177 0.85531 0.91589 0.90065 0.91116 0.91616 0.91479 0.92079 0.78096 0.93485 0.92245 0.89197 0.86711 0.87960 0.88352 0.88317 0.88419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.51 7.90 36.01 0.28 -1.23 16 2 C -0.01 -0.10 5.81 -101.16 -0.59 -0.69 16 3 C -0.22 -2.81 8.97 -37.81 -0.34 -3.15 16 4 C 0.54 8.98 7.48 -12.67 -0.09 8.89 16 5 O -0.54 -10.84 12.74 5.26 0.07 -10.77 16 6 N -0.60 -9.71 2.97 -174.16 -0.52 -10.23 16 7 C 0.11 1.28 6.35 -3.70 -0.02 1.26 16 8 C -0.13 -1.60 6.08 -26.61 -0.16 -1.77 16 9 C -0.13 -2.02 5.36 -26.69 -0.14 -2.17 16 10 C 0.17 3.43 2.92 -67.81 -0.20 3.23 16 11 H 0.05 1.09 8.08 -51.93 -0.42 0.67 16 12 N -0.72 -18.19 5.13 -53.31 -0.27 -18.46 16 13 C -0.24 -6.84 9.93 -15.06 -0.15 -6.99 16 14 H 0.07 2.01 7.83 -52.48 -0.41 1.60 16 15 C -0.01 -0.33 5.50 -17.43 -0.10 -0.43 16 16 N -0.93 -28.36 13.06 55.49 0.72 -27.64 16 17 Si 0.91 22.94 29.55 -169.99 -5.02 17.92 16 18 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 19 H -0.29 -7.37 7.11 56.52 0.40 -6.96 16 20 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 21 C 0.09 1.83 6.01 -3.72 -0.02 1.81 16 22 C -0.13 -1.12 6.01 -91.77 -0.55 -1.67 16 23 C -0.17 -1.26 9.76 -26.73 -0.26 -1.52 16 24 C -0.17 -1.19 10.11 -26.73 -0.27 -1.46 16 25 H 0.08 1.08 8.01 -51.93 -0.42 0.66 16 26 H 0.05 0.52 6.28 -51.93 -0.33 0.19 16 27 H 0.09 1.33 6.21 -51.93 -0.32 1.01 16 28 H 0.13 1.25 5.90 -52.48 -0.31 0.94 16 29 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.08 0.77 5.31 -51.93 -0.28 0.49 16 31 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 34 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.39 10.22 7.80 -40.82 -0.32 9.90 16 36 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 37 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 38 H 0.09 2.05 7.02 -51.93 -0.36 1.69 16 39 H 0.11 0.87 8.14 -51.93 -0.42 0.44 16 40 H 0.10 0.77 6.41 -51.93 -0.33 0.43 16 41 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 LS Contribution 341.52 15.07 5.15 5.15 Total: -1.00 -32.23 341.52 -9.35 -41.57 By element: Atomic # 1 Polarization: 15.21 SS G_CDS: -6.86 Total: 8.35 kcal Atomic # 6 Polarization: -3.27 SS G_CDS: -2.61 Total: -5.89 kcal Atomic # 7 Polarization: -56.26 SS G_CDS: -0.07 Total: -56.32 kcal Atomic # 8 Polarization: -10.84 SS G_CDS: 0.07 Total: -10.77 kcal Atomic # 14 Polarization: 22.94 SS G_CDS: -5.02 Total: 17.92 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -32.23 -9.35 -41.57 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000998630624.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.478 kcal (2) G-P(sol) polarization free energy of solvation -32.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.574 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds