Wall clock time and date at job start Tue Mar 31 2020 00:38:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.32995 * 119.99768 * 2 1 4 4 C 1.47102 * 120.00354 * 352.68645 * 3 2 1 5 5 O 1.21620 * 119.99940 * 353.16312 * 4 3 2 6 6 N 1.34775 * 120.00663 * 173.16584 * 4 3 2 7 7 C 1.46935 * 120.62440 * 356.30489 * 6 4 3 8 8 C 1.53194 * 108.77113 * 126.41844 * 7 6 4 9 9 C 1.53033 * 109.31417 * 54.63183 * 8 7 6 10 10 C 1.53041 * 109.54219 * 298.63727 * 9 8 7 11 11 H 1.09002 * 109.49309 * 301.41061 * 10 9 8 12 12 N 1.46500 * 109.52496 * 181.33404 * 10 9 8 13 13 C 1.36930 * 119.99770 * 155.07897 * 12 10 9 14 14 H 1.08005 * 120.00549 * 359.97438 * 13 12 10 15 15 C 1.38814 * 119.99948 * 179.97438 * 13 12 10 16 16 N 1.31622 * 120.00152 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 120.00296 * 180.02562 * 15 13 12 18 18 H 1.48496 * 109.47738 * 89.99738 * 17 15 13 19 19 H 1.48502 * 109.47212 * 209.99962 * 17 15 13 20 20 H 1.48501 * 109.47047 * 329.99422 * 17 15 13 21 21 C 1.46922 * 120.63381 * 176.33194 * 6 4 3 22 22 C 1.50701 * 120.00164 * 179.97438 * 2 1 3 23 23 C 1.52996 * 117.49728 * 8.62163 * 22 2 1 24 24 C 1.52999 * 117.49820 * 299.99800 * 22 2 1 25 25 H 1.08995 * 109.47225 * 83.99184 * 1 2 3 26 26 H 1.08999 * 109.46680 * 203.99116 * 1 2 3 27 27 H 1.09003 * 109.46808 * 323.98914 * 1 2 3 28 28 H 1.08004 * 120.00163 * 172.69212 * 3 2 1 29 29 H 1.08996 * 109.58477 * 246.20590 * 7 6 4 30 30 H 1.08997 * 109.58453 * 6.62819 * 7 6 4 31 31 H 1.09001 * 109.49543 * 174.59074 * 8 7 6 32 32 H 1.09005 * 109.49542 * 294.64850 * 8 7 6 33 33 H 1.08997 * 109.46032 * 178.61181 * 9 8 7 34 34 H 1.09003 * 109.46012 * 58.65439 * 9 8 7 35 35 H 0.96999 * 119.99893 * 335.07357 * 12 10 9 36 36 H 0.96991 * 120.00361 * 180.02562 * 16 15 13 37 37 H 1.09004 * 109.58381 * 113.79789 * 21 6 4 38 38 H 1.08995 * 109.58700 * 353.37241 * 21 6 4 39 39 H 1.08997 * 115.54824 * 154.32697 * 22 2 1 40 40 H 1.09005 * 117.50256 * 359.97438 * 23 22 2 41 41 H 1.09004 * 117.49844 * 145.01755 * 23 22 2 42 42 H 1.08995 * 117.49874 * 214.97612 * 24 22 2 43 43 H 1.09001 * 117.49587 * 0.02562 * 24 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1720 1.1518 0.0000 4 6 1.4455 2.4206 -0.1622 5 8 0.2570 2.4121 -0.4201 6 7 2.0968 3.5925 -0.0250 7 6 3.5129 3.6205 0.3657 8 6 4.2913 4.4491 -0.6611 9 6 3.6471 5.8313 -0.7892 10 6 2.2061 5.6809 -1.2823 11 1 2.2023 5.1660 -2.2431 12 7 1.6000 7.0058 -1.4351 13 6 0.5601 7.1864 -2.3075 14 1 0.1869 6.3523 -2.8831 15 6 -0.0146 8.4417 -2.4519 16 7 0.4398 9.4583 -1.7500 17 14 -1.4337 8.6881 -3.6414 18 1 -2.7185 8.4550 -2.9343 19 1 -1.4031 10.0764 -4.1677 20 1 -1.3075 7.7289 -4.7680 21 6 1.4041 4.8662 -0.2625 22 6 2.2606 -1.3051 0.0006 23 6 1.4518 -2.5878 -0.2023 24 6 2.0262 -2.2556 1.1764 25 1 -0.3633 0.1076 -1.0220 26 1 -0.3633 -0.9389 0.4179 27 1 -0.3633 0.8313 0.6042 28 1 3.2454 1.1557 0.1190 29 1 3.6110 4.0746 1.3517 30 1 3.9058 2.6041 0.3885 31 1 5.3248 4.5584 -0.3323 32 1 4.2683 3.9456 -1.6276 33 1 4.2137 6.4315 -1.5010 34 1 3.6485 6.3241 0.1831 35 1 1.9353 7.7551 -0.9183 36 1 0.0380 10.3353 -1.8507 37 1 1.3303 5.4219 0.6723 38 1 0.4057 4.6717 -0.6542 39 1 3.2632 -1.2692 -0.4255 40 1 0.3746 -2.4879 -0.3358 41 1 1.9222 -3.3962 -0.7621 42 1 2.8745 -2.8454 1.5235 43 1 1.3266 -1.9371 1.9492 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000998630624.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:38:39 Heat of formation + Delta-G solvation = -1.812948 kcal Electronic energy + Delta-G solvation = -21770.851820 eV Core-core repulsion = 18623.562046 eV Total energy + Delta-G solvation = -3147.289773 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.27636 -39.28321 -38.37366 -36.21847 -34.21445 -33.85766 -32.71003 -30.28403 -28.75518 -26.58906 -25.89668 -24.47564 -23.25319 -23.18097 -21.74398 -20.31893 -19.19813 -18.97128 -18.36813 -17.05303 -16.87958 -16.30274 -16.12695 -15.63945 -15.45664 -15.35476 -15.16757 -14.63630 -14.28996 -14.01942 -13.85738 -13.70838 -13.58150 -13.12634 -12.92547 -12.80600 -12.55469 -12.41184 -12.25275 -12.19181 -11.96208 -11.89625 -11.82403 -11.58285 -11.35217 -11.28548 -11.11993 -10.51805 -9.98130 -9.57960 -9.00877 -8.00689 -5.30068 0.35369 1.42358 1.44605 1.52762 2.07773 2.27291 2.52052 3.03729 3.32394 3.47402 3.73580 3.86380 3.93010 3.96959 4.05779 4.08086 4.16346 4.22528 4.32729 4.36656 4.38421 4.60720 4.68910 4.74229 4.76892 4.83734 4.87514 4.91320 5.02129 5.03357 5.11819 5.16545 5.17802 5.28470 5.37642 5.41537 5.46743 5.51703 5.54406 5.66515 6.22229 6.56714 7.26069 7.28485 8.00780 8.26351 9.22104 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.023569 B = 0.003807 C = 0.003387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1187.725667 B = 7353.617619 C = 8265.141077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.003 3.997 3 C -0.234 4.234 4 C 0.529 3.471 5 O -0.591 6.591 6 N -0.605 5.605 7 C 0.101 3.899 8 C -0.121 4.121 9 C -0.118 4.118 10 C 0.168 3.832 11 H 0.030 0.970 12 N -0.730 5.730 13 C -0.246 4.246 14 H 0.064 0.936 15 C -0.068 4.068 16 N -0.964 5.964 17 Si 0.969 3.031 18 H -0.289 1.289 19 H -0.288 1.288 20 H -0.273 1.273 21 C 0.109 3.891 22 C -0.142 4.142 23 C -0.172 4.172 24 C -0.157 4.157 25 H 0.063 0.937 26 H 0.077 0.923 27 H 0.060 0.940 28 H 0.163 0.837 29 H 0.080 0.920 30 H 0.119 0.881 31 H 0.111 0.889 32 H 0.063 0.937 33 H 0.061 0.939 34 H 0.065 0.935 35 H 0.377 0.623 36 H 0.253 0.747 37 H 0.053 0.947 38 H 0.046 0.954 39 H 0.134 0.866 40 H 0.095 0.905 41 H 0.116 0.884 42 H 0.120 0.880 43 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.022 -23.999 7.030 27.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.001 3.999 3 C -0.254 4.254 4 C 0.322 3.678 5 O -0.475 6.475 6 N -0.337 5.337 7 C -0.020 4.020 8 C -0.159 4.159 9 C -0.157 4.157 10 C 0.058 3.942 11 H 0.048 0.952 12 N -0.370 5.370 13 C -0.378 4.378 14 H 0.082 0.918 15 C -0.261 4.261 16 N -0.614 5.614 17 Si 0.798 3.202 18 H -0.216 1.216 19 H -0.214 1.214 20 H -0.198 1.198 21 C -0.017 4.017 22 C -0.160 4.160 23 C -0.209 4.209 24 C -0.193 4.193 25 H 0.082 0.918 26 H 0.096 0.904 27 H 0.079 0.921 28 H 0.180 0.820 29 H 0.098 0.902 30 H 0.136 0.864 31 H 0.130 0.870 32 H 0.082 0.918 33 H 0.080 0.920 34 H 0.084 0.916 35 H 0.210 0.790 36 H 0.062 0.938 37 H 0.072 0.928 38 H 0.065 0.935 39 H 0.151 0.849 40 H 0.114 0.886 41 H 0.134 0.866 42 H 0.138 0.862 43 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 10.305 -23.992 6.756 26.971 hybrid contribution -1.193 1.281 -0.551 1.835 sum 9.112 -22.712 6.206 25.246 Atomic orbital electron populations 1.21048 0.92247 1.02091 1.02417 1.22019 0.95515 0.93724 0.88667 1.22418 1.01552 0.89895 1.11565 1.19293 0.86507 0.85413 0.76574 1.90740 1.17476 1.87941 1.51316 1.48210 1.12957 1.05018 1.67497 1.22151 0.78228 1.03192 0.98413 1.21882 1.00409 0.93830 0.99815 1.21738 0.93916 0.98644 1.01373 1.20650 0.92812 0.85567 0.95176 0.95200 1.42516 1.39115 1.06161 1.49222 1.19516 1.08559 0.94208 1.15526 0.91791 1.25497 1.02641 0.95646 1.02289 1.69789 1.45429 1.00465 1.45748 0.85213 0.79313 0.76896 0.78804 1.21576 1.21405 1.19825 1.22144 0.96686 0.83731 0.99134 1.21320 1.00742 0.87422 1.06498 1.23175 1.00296 0.97283 1.00158 1.23077 1.04090 1.00944 0.91228 0.91847 0.90439 0.92117 0.82024 0.90162 0.86359 0.87044 0.91801 0.92034 0.91613 0.79027 0.93770 0.92825 0.93546 0.84865 0.88617 0.86606 0.86218 0.88909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.04 7.90 71.24 0.56 -2.48 16 2 C 0.00 0.06 5.81 -17.61 -0.10 -0.04 16 3 C -0.23 -5.40 8.97 23.43 0.21 -5.19 16 4 C 0.53 17.69 7.48 86.57 0.65 18.34 16 5 O -0.59 -25.01 12.74 -4.10 -0.05 -25.06 16 6 N -0.60 -19.27 2.97 -823.17 -2.45 -21.72 16 7 C 0.10 2.11 6.35 86.36 0.55 2.66 16 8 C -0.12 -2.58 6.08 30.67 0.19 -2.39 16 9 C -0.12 -3.69 5.36 30.62 0.16 -3.53 16 10 C 0.17 7.03 2.92 45.07 0.13 7.16 16 11 H 0.03 1.36 8.08 -2.39 -0.02 1.34 16 12 N -0.73 -38.36 5.13 -322.57 -1.65 -40.01 16 13 C -0.25 -14.46 9.93 84.04 0.83 -13.63 16 14 H 0.06 3.77 7.83 -2.91 -0.02 3.74 16 15 C -0.07 -4.05 5.50 84.86 0.47 -3.58 16 16 N -0.96 -60.01 13.06 21.65 0.28 -59.73 16 17 Si 0.97 48.22 29.55 68.60 2.03 50.25 16 18 H -0.29 -14.26 7.11 99.48 0.71 -13.55 16 19 H -0.29 -14.07 7.11 99.48 0.71 -13.37 16 20 H -0.27 -13.08 7.11 99.48 0.71 -12.38 16 21 C 0.11 4.47 6.01 86.36 0.52 4.98 16 22 C -0.14 -1.95 6.01 -11.54 -0.07 -2.02 16 23 C -0.17 -1.97 9.76 30.59 0.30 -1.68 16 24 C -0.16 -1.65 10.11 30.59 0.31 -1.34 16 25 H 0.06 1.79 8.01 -2.39 -0.02 1.77 16 26 H 0.08 1.47 6.28 -2.39 -0.01 1.46 16 27 H 0.06 1.89 6.21 -2.39 -0.01 1.88 16 28 H 0.16 2.48 5.90 -2.91 -0.02 2.46 16 29 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 30 H 0.12 1.64 5.31 -2.39 -0.01 1.63 16 31 H 0.11 1.60 8.14 -2.39 -0.02 1.58 16 32 H 0.06 1.43 8.14 -2.38 -0.02 1.41 16 33 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 34 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 35 H 0.38 20.73 7.80 -92.71 -0.72 20.00 16 36 H 0.25 15.22 8.31 -92.71 -0.77 14.45 16 37 H 0.05 2.22 8.14 -2.38 -0.02 2.20 16 38 H 0.05 2.28 7.02 -2.39 -0.02 2.26 16 39 H 0.13 1.40 8.14 -2.39 -0.02 1.38 16 40 H 0.10 1.22 6.41 -2.38 -0.02 1.21 16 41 H 0.12 0.95 8.14 -2.38 -0.02 0.93 16 42 H 0.12 0.81 8.14 -2.39 -0.02 0.79 16 43 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 Total: -1.00 -74.45 341.52 3.14 -71.30 By element: Atomic # 1 Polarization: 27.42 SS G_CDS: 0.28 Total: 27.70 kcal Atomic # 6 Polarization: -7.44 SS G_CDS: 4.71 Total: -2.73 kcal Atomic # 7 Polarization: -117.64 SS G_CDS: -3.82 Total: -121.46 kcal Atomic # 8 Polarization: -25.01 SS G_CDS: -0.05 Total: -25.06 kcal Atomic # 14 Polarization: 48.22 SS G_CDS: 2.03 Total: 50.25 kcal Total: -74.45 3.14 -71.30 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000998630624.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.488 kcal (2) G-P(sol) polarization free energy of solvation -74.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.301 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds