Wall clock time and date at job start Tue Mar 31 2020 00:47:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.47245 * 2 1 4 4 H 1.08998 * 115.55632 * 29.31365 * 3 2 1 5 5 C 1.52997 * 117.49714 * 243.62445 * 3 2 1 6 6 C 1.52999 * 117.49923 * 175.00223 * 3 2 1 7 7 H 1.08999 * 117.51822 * 0.02562 * 6 3 2 8 8 C 1.50696 * 117.49774 * 214.97888 * 6 3 2 9 9 O 1.21289 * 120.00076 * 359.97438 * 8 6 3 10 10 N 1.34776 * 120.00153 * 179.97438 * 8 6 3 11 11 C 1.46501 * 120.00254 * 180.02562 * 10 8 6 12 12 C 1.50696 * 109.46953 * 180.02562 * 11 10 8 13 13 C 1.29213 * 117.50453 * 95.18605 * 12 11 10 14 14 C 1.50324 * 123.57452 * 181.03540 * 13 12 11 15 15 N 1.47002 * 109.16491 * 348.83294 * 14 13 12 16 16 C 1.36937 * 121.37535 * 222.96910 * 15 14 13 17 17 H 1.07996 * 120.00272 * 155.95667 * 16 15 14 18 18 C 1.38817 * 120.00053 * 335.96059 * 16 15 14 19 19 N 1.31614 * 119.99757 * 344.52631 * 18 16 15 20 20 Si 1.86798 * 120.00074 * 164.52742 * 18 16 15 21 21 H 1.48493 * 109.47156 * 89.99850 * 20 18 16 22 22 H 1.48506 * 109.47003 * 210.00056 * 20 18 16 23 23 H 1.48502 * 109.46882 * 329.99759 * 20 18 16 24 24 C 1.47336 * 117.25304 * 42.95003 * 15 14 13 25 25 C 1.49970 * 117.69816 * 275.00088 * 12 11 10 26 26 H 1.08997 * 109.47031 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46935 * 299.99610 * 1 2 3 28 28 H 1.08996 * 109.47262 * 59.99659 * 1 2 3 29 29 H 1.09003 * 109.46762 * 239.99886 * 2 1 3 30 30 H 1.08996 * 109.47262 * 120.00341 * 2 1 3 31 31 H 1.09002 * 117.49497 * 145.01758 * 5 3 2 32 32 H 1.08999 * 117.50086 * 0.02562 * 5 3 2 33 33 H 0.97008 * 119.99602 * 0.02562 * 10 8 6 34 34 H 1.08995 * 109.46825 * 60.00545 * 11 10 8 35 35 H 1.08993 * 109.46964 * 300.00464 * 11 10 8 36 36 H 1.08002 * 118.25056 * 0.84540 * 13 12 11 37 37 H 1.09005 * 109.51904 * 228.92989 * 14 13 12 38 38 H 1.08994 * 109.52448 * 108.74439 * 14 13 12 39 39 H 0.97002 * 119.99923 * 180.02562 * 19 18 16 40 40 H 1.08996 * 109.78331 * 178.61791 * 24 15 14 41 41 H 1.09008 * 109.77501 * 57.80432 * 24 15 14 42 42 H 1.08999 * 109.31380 * 40.69407 * 25 12 11 43 43 H 1.09007 * 109.31421 * 281.07856 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.3884 2.1716 0.4814 5 6 2.8440 1.9075 -1.2159 6 6 3.5502 1.6579 0.1182 7 1 4.1807 0.7721 0.1956 8 6 4.0229 2.8619 0.8913 9 8 3.2158 3.6169 1.3910 10 7 5.3425 3.0999 1.0275 11 6 5.8020 4.2701 1.7795 12 6 7.3086 4.3061 1.7815 13 6 7.8894 5.0280 0.8809 14 6 9.3819 5.1440 0.7437 15 7 10.0228 4.5477 1.9246 16 6 11.0821 5.1554 2.5441 17 1 11.2921 4.9475 3.5828 18 6 11.8860 6.0390 1.8369 19 7 11.8336 6.0681 0.5221 20 14 13.0422 7.1864 2.7513 21 1 14.3581 6.5225 2.9319 22 1 13.2212 8.4356 1.9684 23 1 12.4661 7.5134 4.0804 24 6 9.4782 3.2694 2.4146 25 6 8.0236 3.5061 2.8293 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 1.8933 -0.5139 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 2.7212 2.9427 -1.5343 32 1 3.0092 1.1859 -2.0160 33 1 5.9879 2.4962 0.6275 34 1 5.4384 4.2086 2.8052 35 1 5.4179 5.1765 1.3116 36 1 7.2694 5.5758 0.1867 37 1 9.6602 6.1954 0.6702 38 1 9.7074 4.6166 -0.1528 39 1 12.3957 6.6852 0.0279 40 1 10.0556 2.9274 3.2734 41 1 9.5186 2.5230 1.6211 42 1 7.5232 2.5458 2.9536 43 1 8.0020 4.0489 3.7744 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001001173932.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:47:17 Heat of formation + Delta-G solvation = 11.001530 kcal Electronic energy + Delta-G solvation = -21138.090283 eV Core-core repulsion = 17991.356187 eV Total energy + Delta-G solvation = -3146.734096 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -40.05409 -38.05057 -37.07380 -34.89519 -32.91372 -32.28469 -30.90009 -29.75542 -27.27450 -24.97238 -24.09391 -23.28386 -22.69861 -21.11272 -20.75893 -20.09197 -17.77689 -17.39380 -16.07895 -15.75582 -15.27841 -15.11182 -14.87949 -14.56105 -14.30511 -13.88299 -13.65081 -13.45637 -13.05626 -12.73221 -12.65013 -12.38041 -12.26240 -12.05211 -11.63053 -11.57008 -11.38950 -11.30069 -10.93696 -10.74530 -10.51071 -10.42528 -10.34471 -10.26677 -9.86891 -9.84820 -9.60605 -8.95345 -8.70726 -8.09064 -6.77498 -5.82594 -3.21298 2.49060 2.58113 3.36280 3.43332 3.44414 3.45884 3.67099 4.42538 4.47238 4.54047 4.61834 4.89809 4.98587 5.05402 5.12563 5.18803 5.33364 5.37889 5.41093 5.51466 5.56931 5.65222 5.72107 5.80986 5.81320 5.85725 5.93864 6.05183 6.11957 6.14700 6.30928 6.45096 6.53562 6.70762 6.84010 7.14022 7.23219 7.30236 7.61157 7.70557 7.79866 8.27810 8.35228 9.16656 9.79416 10.37310 11.27969 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.048363 B = 0.002798 C = 0.002780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 578.815089 B =10004.459656 C =10070.046689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.095 4.095 3 C -0.119 4.119 4 H 0.117 0.883 5 C -0.149 4.149 6 C -0.190 4.190 7 H 0.123 0.877 8 C 0.539 3.461 9 O -0.549 6.549 10 N -0.716 5.716 11 C 0.157 3.843 12 C -0.166 4.166 13 C -0.124 4.124 14 C 0.194 3.806 15 N -0.595 5.595 16 C -0.246 4.246 17 H 0.069 0.931 18 C -0.002 4.002 19 N -0.910 5.910 20 Si 0.905 3.095 21 H -0.287 1.287 22 H -0.289 1.289 23 H -0.280 1.280 24 C 0.144 3.856 25 C -0.090 4.090 26 H 0.054 0.946 27 H 0.056 0.944 28 H 0.056 0.944 29 H 0.065 0.935 30 H 0.067 0.933 31 H 0.098 0.902 32 H 0.103 0.897 33 H 0.402 0.598 34 H 0.065 0.935 35 H 0.064 0.936 36 H 0.094 0.906 37 H 0.093 0.907 38 H 0.041 0.959 39 H 0.254 0.746 40 H 0.057 0.943 41 H 0.023 0.977 42 H 0.053 0.947 43 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.251 -10.960 -2.945 20.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.132 4.132 3 C -0.138 4.138 4 H 0.135 0.865 5 C -0.186 4.186 6 C -0.211 4.211 7 H 0.141 0.859 8 C 0.325 3.675 9 O -0.427 6.427 10 N -0.366 5.366 11 C 0.034 3.966 12 C -0.166 4.166 13 C -0.145 4.145 14 C 0.069 3.931 15 N -0.318 5.318 16 C -0.375 4.375 17 H 0.086 0.914 18 C -0.200 4.200 19 N -0.555 5.555 20 Si 0.735 3.265 21 H -0.214 1.214 22 H -0.216 1.216 23 H -0.205 1.205 24 C 0.017 3.983 25 C -0.129 4.129 26 H 0.073 0.927 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.083 0.917 30 H 0.086 0.914 31 H 0.117 0.883 32 H 0.122 0.878 33 H 0.237 0.763 34 H 0.083 0.917 35 H 0.082 0.918 36 H 0.112 0.888 37 H 0.111 0.889 38 H 0.059 0.941 39 H 0.064 0.936 40 H 0.076 0.924 41 H 0.041 0.959 42 H 0.071 0.929 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -17.697 -10.279 -2.662 20.638 hybrid contribution 1.039 0.431 0.183 1.139 sum -16.658 -9.848 -2.479 19.509 Atomic orbital electron populations 1.21740 0.95214 1.01584 1.02156 1.21158 0.96245 0.93686 1.02152 1.22469 0.91485 0.98637 1.01172 0.86486 1.23095 1.02041 1.03163 0.90323 1.22319 0.97616 0.99111 1.02100 0.85946 1.19679 0.82406 0.85535 0.79898 1.90680 1.54075 1.48886 1.49082 1.46129 1.06621 1.28736 1.55147 1.20473 0.92557 0.87571 0.95992 1.20431 0.92458 1.03492 1.00257 1.23223 1.00198 0.95370 0.95715 1.19762 0.83766 1.00306 0.89291 1.44125 1.35069 1.19785 1.32868 1.19171 1.03828 1.21285 0.93261 0.91371 1.24993 0.98023 1.01651 0.95282 1.70004 1.41954 1.38801 1.04750 0.86254 0.80727 0.80527 0.79032 1.21418 1.21550 1.20526 1.20954 0.91351 0.88779 0.97189 1.20760 0.97715 0.97445 0.96990 0.92656 0.92500 0.92531 0.91651 0.91415 0.88323 0.87823 0.76331 0.91654 0.91751 0.88784 0.88885 0.94092 0.93589 0.92435 0.95937 0.92857 0.91712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 9.87 37.16 0.37 -0.62 16 2 C -0.10 -0.69 6.22 -26.73 -0.17 -0.85 16 3 C -0.12 -1.12 5.25 -90.62 -0.48 -1.59 16 4 H 0.12 1.31 7.60 -51.93 -0.39 0.91 16 5 C -0.15 -1.31 9.88 -26.73 -0.26 -1.57 16 6 C -0.19 -1.93 5.91 -91.77 -0.54 -2.47 16 7 H 0.12 1.00 8.14 -51.93 -0.42 0.58 16 8 C 0.54 7.42 7.61 -10.99 -0.08 7.34 16 9 O -0.55 -9.60 16.26 5.55 0.09 -9.51 16 10 N -0.72 -9.48 5.55 -61.48 -0.34 -9.82 16 11 C 0.16 2.39 5.66 -5.20 -0.03 2.36 16 12 C -0.17 -2.83 5.21 -100.93 -0.53 -3.35 16 13 C -0.12 -2.35 9.46 -35.72 -0.34 -2.68 16 14 C 0.19 4.53 5.23 -5.10 -0.03 4.50 16 15 N -0.60 -14.71 3.01 -173.68 -0.52 -15.23 16 16 C -0.25 -6.69 9.71 -15.06 -0.15 -6.83 16 17 H 0.07 1.82 7.88 -52.49 -0.41 1.40 16 18 C 0.00 -0.05 5.01 -17.43 -0.09 -0.13 16 19 N -0.91 -25.99 11.08 55.49 0.61 -25.37 16 20 Si 0.90 21.59 29.58 -169.99 -5.03 16.57 16 21 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 22 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 23 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 24 C 0.14 2.92 6.58 -3.53 -0.02 2.90 16 25 C -0.09 -1.55 5.96 -28.18 -0.17 -1.72 16 26 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 27 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.06 0.41 7.88 -51.93 -0.41 0.00 16 30 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.10 0.71 8.03 -51.93 -0.42 0.29 16 33 H 0.40 4.64 8.46 -40.82 -0.35 4.29 16 34 H 0.07 1.02 8.11 -51.93 -0.42 0.60 16 35 H 0.06 1.02 7.76 -51.93 -0.40 0.62 16 36 H 0.09 1.60 7.72 -52.49 -0.41 1.20 16 37 H 0.09 2.43 6.41 -51.93 -0.33 2.10 16 38 H 0.04 1.02 8.14 -51.93 -0.42 0.60 16 39 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 40 H 0.06 1.14 7.96 -51.93 -0.41 0.73 16 41 H 0.02 0.45 8.14 -51.92 -0.42 0.03 16 42 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 43 H 0.06 1.16 8.14 -51.92 -0.42 0.74 16 LS Contribution 351.87 15.07 5.30 5.30 Total: -1.00 -30.72 351.87 -9.71 -40.43 By element: Atomic # 1 Polarization: 9.68 SS G_CDS: -7.32 Total: 2.36 kcal Atomic # 6 Polarization: -2.22 SS G_CDS: -2.51 Total: -4.73 kcal Atomic # 7 Polarization: -50.17 SS G_CDS: -0.25 Total: -50.42 kcal Atomic # 8 Polarization: -9.60 SS G_CDS: 0.09 Total: -9.51 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.03 Total: 16.57 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -30.72 -9.71 -40.43 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001001173932.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.436 kcal (2) G-P(sol) polarization free energy of solvation -30.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.435 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds