Wall clock time and date at job start Tue Mar 31 2020 00:47:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.47245 * 2 1 4 4 H 1.08998 * 115.55632 * 29.31365 * 3 2 1 5 5 C 1.52997 * 117.49714 * 243.62445 * 3 2 1 6 6 C 1.52999 * 117.49923 * 175.00223 * 3 2 1 7 7 H 1.08999 * 117.51822 * 0.02562 * 6 3 2 8 8 C 1.50696 * 117.49774 * 214.97888 * 6 3 2 9 9 O 1.21289 * 120.00076 * 359.97438 * 8 6 3 10 10 N 1.34776 * 120.00153 * 179.97438 * 8 6 3 11 11 C 1.46501 * 120.00254 * 180.02562 * 10 8 6 12 12 C 1.50696 * 109.46953 * 180.02562 * 11 10 8 13 13 C 1.29213 * 117.50453 * 95.18605 * 12 11 10 14 14 C 1.50324 * 123.57452 * 181.03540 * 13 12 11 15 15 N 1.47002 * 109.16491 * 348.83294 * 14 13 12 16 16 C 1.36937 * 121.37535 * 222.96910 * 15 14 13 17 17 H 1.07996 * 120.00272 * 155.95667 * 16 15 14 18 18 C 1.38817 * 120.00053 * 335.96059 * 16 15 14 19 19 N 1.31614 * 119.99757 * 344.52631 * 18 16 15 20 20 Si 1.86798 * 120.00074 * 164.52742 * 18 16 15 21 21 H 1.48493 * 109.47156 * 89.99850 * 20 18 16 22 22 H 1.48506 * 109.47003 * 210.00056 * 20 18 16 23 23 H 1.48502 * 109.46882 * 329.99759 * 20 18 16 24 24 C 1.47336 * 117.25304 * 42.95003 * 15 14 13 25 25 C 1.49970 * 117.69816 * 275.00088 * 12 11 10 26 26 H 1.08997 * 109.47031 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46935 * 299.99610 * 1 2 3 28 28 H 1.08996 * 109.47262 * 59.99659 * 1 2 3 29 29 H 1.09003 * 109.46762 * 239.99886 * 2 1 3 30 30 H 1.08996 * 109.47262 * 120.00341 * 2 1 3 31 31 H 1.09002 * 117.49497 * 145.01758 * 5 3 2 32 32 H 1.08999 * 117.50086 * 0.02562 * 5 3 2 33 33 H 0.97008 * 119.99602 * 0.02562 * 10 8 6 34 34 H 1.08995 * 109.46825 * 60.00545 * 11 10 8 35 35 H 1.08993 * 109.46964 * 300.00464 * 11 10 8 36 36 H 1.08002 * 118.25056 * 0.84540 * 13 12 11 37 37 H 1.09005 * 109.51904 * 228.92989 * 14 13 12 38 38 H 1.08994 * 109.52448 * 108.74439 * 14 13 12 39 39 H 0.97002 * 119.99923 * 180.02562 * 19 18 16 40 40 H 1.08996 * 109.78331 * 178.61791 * 24 15 14 41 41 H 1.09008 * 109.77501 * 57.80432 * 24 15 14 42 42 H 1.08999 * 109.31380 * 40.69407 * 25 12 11 43 43 H 1.09007 * 109.31421 * 281.07856 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.3884 2.1716 0.4814 5 6 2.8440 1.9075 -1.2159 6 6 3.5502 1.6579 0.1182 7 1 4.1807 0.7721 0.1956 8 6 4.0229 2.8619 0.8913 9 8 3.2158 3.6169 1.3910 10 7 5.3425 3.0999 1.0275 11 6 5.8020 4.2701 1.7795 12 6 7.3086 4.3061 1.7815 13 6 7.8894 5.0280 0.8809 14 6 9.3819 5.1440 0.7437 15 7 10.0228 4.5477 1.9246 16 6 11.0821 5.1554 2.5441 17 1 11.2921 4.9475 3.5828 18 6 11.8860 6.0390 1.8369 19 7 11.8336 6.0681 0.5221 20 14 13.0422 7.1864 2.7513 21 1 14.3581 6.5225 2.9319 22 1 13.2212 8.4356 1.9684 23 1 12.4661 7.5134 4.0804 24 6 9.4782 3.2694 2.4146 25 6 8.0236 3.5061 2.8293 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 1.8933 -0.5139 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 2.7212 2.9427 -1.5343 32 1 3.0092 1.1859 -2.0160 33 1 5.9879 2.4962 0.6275 34 1 5.4384 4.2086 2.8052 35 1 5.4179 5.1765 1.3116 36 1 7.2694 5.5758 0.1867 37 1 9.6602 6.1954 0.6702 38 1 9.7074 4.6166 -0.1528 39 1 12.3957 6.6852 0.0279 40 1 10.0556 2.9274 3.2734 41 1 9.5186 2.5230 1.6211 42 1 7.5232 2.5458 2.9536 43 1 8.0020 4.0489 3.7744 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001001173932.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:47:15 Heat of formation + Delta-G solvation = -6.804346 kcal Electronic energy + Delta-G solvation = -21138.862404 eV Core-core repulsion = 17991.356187 eV Total energy + Delta-G solvation = -3147.506217 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.10898 -39.50867 -38.04388 -36.36938 -34.54070 -32.98229 -32.53638 -31.44553 -28.81559 -26.45962 -24.91201 -24.52010 -24.14962 -22.75248 -21.52800 -21.05199 -19.50982 -18.53259 -17.41238 -17.18043 -16.93962 -16.30984 -15.94652 -15.56988 -15.43758 -15.26222 -15.20823 -14.92972 -14.46519 -13.98690 -13.68077 -13.50282 -13.33958 -13.28468 -12.97102 -12.92801 -12.80354 -12.59059 -12.25644 -12.18575 -12.10543 -11.90923 -11.72134 -11.32313 -11.23058 -11.06101 -10.82021 -10.68895 -10.12060 -9.67784 -8.75981 -7.89500 -5.30513 1.16822 1.46162 1.47629 1.48064 1.57265 2.36330 2.50513 2.87774 3.27869 3.60808 3.67502 3.78590 3.84688 3.89642 3.94833 4.20711 4.29845 4.41998 4.50518 4.51787 4.57450 4.64664 4.72330 4.79795 4.82361 4.90247 4.95692 5.00762 5.09292 5.17400 5.20194 5.24197 5.31288 5.35314 5.41125 5.46807 5.51861 5.60635 5.75125 6.14901 6.33071 6.55516 7.12580 7.21852 7.82598 8.36250 9.19186 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.048363 B = 0.002798 C = 0.002780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 578.815089 B =10004.459656 C =10070.046689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.090 4.090 3 C -0.121 4.121 4 H 0.092 0.908 5 C -0.138 4.138 6 C -0.195 4.195 7 H 0.149 0.851 8 C 0.536 3.464 9 O -0.591 6.591 10 N -0.708 5.708 11 C 0.166 3.834 12 C -0.138 4.138 13 C -0.142 4.142 14 C 0.205 3.795 15 N -0.616 5.616 16 C -0.257 4.257 17 H 0.070 0.930 18 C -0.055 4.055 19 N -0.939 5.939 20 Si 0.968 3.032 21 H -0.284 1.284 22 H -0.293 1.293 23 H -0.273 1.273 24 C 0.139 3.861 25 C -0.084 4.084 26 H 0.067 0.933 27 H 0.047 0.953 28 H 0.056 0.944 29 H 0.082 0.918 30 H 0.069 0.931 31 H 0.086 0.914 32 H 0.131 0.869 33 H 0.414 0.586 34 H 0.066 0.934 35 H 0.058 0.942 36 H 0.111 0.889 37 H 0.056 0.944 38 H 0.016 0.984 39 H 0.250 0.750 40 H 0.060 0.940 41 H 0.029 0.971 42 H 0.089 0.911 43 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.343 -12.732 -2.627 22.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.128 4.128 3 C -0.140 4.140 4 H 0.111 0.889 5 C -0.175 4.175 6 C -0.215 4.215 7 H 0.167 0.833 8 C 0.324 3.676 9 O -0.472 6.472 10 N -0.359 5.359 11 C 0.043 3.957 12 C -0.139 4.139 13 C -0.162 4.162 14 C 0.080 3.920 15 N -0.340 5.340 16 C -0.387 4.387 17 H 0.088 0.912 18 C -0.250 4.250 19 N -0.586 5.586 20 Si 0.796 3.204 21 H -0.210 1.210 22 H -0.220 1.220 23 H -0.198 1.198 24 C 0.013 3.987 25 C -0.122 4.122 26 H 0.086 0.914 27 H 0.066 0.934 28 H 0.075 0.925 29 H 0.100 0.900 30 H 0.088 0.912 31 H 0.104 0.896 32 H 0.149 0.851 33 H 0.250 0.750 34 H 0.085 0.915 35 H 0.077 0.923 36 H 0.129 0.871 37 H 0.075 0.925 38 H 0.033 0.967 39 H 0.059 0.941 40 H 0.078 0.922 41 H 0.047 0.953 42 H 0.107 0.893 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -18.793 -12.092 -2.339 22.469 hybrid contribution 1.332 0.923 0.119 1.625 sum -17.462 -11.169 -2.219 20.846 Atomic orbital electron populations 1.21748 0.95001 1.02265 1.01769 1.21164 0.96415 0.92135 1.03046 1.22484 0.90666 0.99518 1.01325 0.88940 1.23197 1.00671 1.03253 0.90427 1.22362 0.98396 0.98251 1.02523 0.83310 1.20306 0.81894 0.86040 0.79361 1.90665 1.55049 1.50615 1.50899 1.45990 1.06961 1.28169 1.54755 1.20232 0.90729 0.88377 0.96379 1.20531 0.93509 1.01314 0.98511 1.22891 0.97523 0.97783 0.98032 1.19403 0.86602 0.97763 0.88247 1.44410 1.34982 1.21529 1.33054 1.19502 1.04273 1.21384 0.93548 0.91210 1.25744 0.99954 1.03261 0.96014 1.70160 1.42937 1.39462 1.06022 0.85267 0.78865 0.78311 0.77969 1.21029 1.21964 1.19754 1.21146 0.93063 0.87122 0.97325 1.20701 0.95785 0.99229 0.96533 0.91412 0.93430 0.92466 0.89965 0.91220 0.89583 0.85078 0.75001 0.91539 0.92337 0.87089 0.92531 0.96680 0.94103 0.92189 0.95287 0.89291 0.91896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.71 9.87 71.98 0.71 -1.00 16 2 C -0.09 -1.07 6.22 30.60 0.19 -0.88 16 3 C -0.12 -2.06 5.25 -10.79 -0.06 -2.11 16 4 H 0.09 2.05 7.60 -2.39 -0.02 2.03 16 5 C -0.14 -2.09 9.88 30.59 0.30 -1.79 16 6 C -0.19 -3.44 5.91 -11.54 -0.07 -3.51 16 7 H 0.15 1.85 8.14 -2.39 -0.02 1.83 16 8 C 0.54 13.86 7.61 87.66 0.67 14.53 16 9 O -0.59 -20.33 16.26 -3.06 -0.05 -20.38 16 10 N -0.71 -17.08 5.55 -466.81 -2.59 -19.67 16 11 C 0.17 4.73 5.66 85.63 0.48 5.22 16 12 C -0.14 -4.46 5.21 -14.91 -0.08 -4.54 16 13 C -0.14 -5.29 9.46 27.34 0.26 -5.03 16 14 C 0.20 9.84 5.23 85.42 0.45 10.29 16 15 N -0.62 -30.64 3.01 -703.39 -2.12 -32.76 16 16 C -0.26 -14.09 9.71 84.03 0.82 -13.28 16 17 H 0.07 3.71 7.88 -2.91 -0.02 3.69 16 18 C -0.05 -3.07 5.01 84.86 0.43 -2.64 16 19 N -0.94 -55.22 11.08 21.65 0.24 -54.98 16 20 Si 0.97 44.95 29.58 68.60 2.03 46.98 16 21 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 22 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 23 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 24 C 0.14 5.46 6.58 86.25 0.57 6.02 16 25 C -0.08 -2.68 5.96 29.65 0.18 -2.50 16 26 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 27 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 28 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 29 H 0.08 0.72 7.88 -2.39 -0.02 0.70 16 30 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 32 H 0.13 1.28 8.03 -2.39 -0.02 1.26 16 33 H 0.41 8.27 8.46 -92.70 -0.78 7.48 16 34 H 0.07 1.93 8.11 -2.39 -0.02 1.91 16 35 H 0.06 1.78 7.76 -2.39 -0.02 1.76 16 36 H 0.11 3.73 7.72 -2.91 -0.02 3.71 16 37 H 0.06 3.09 6.41 -2.38 -0.02 3.08 16 38 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 39 H 0.25 14.25 8.31 -92.71 -0.77 13.48 16 40 H 0.06 2.30 7.96 -2.39 -0.02 2.28 16 41 H 0.03 1.11 8.14 -2.38 -0.02 1.09 16 42 H 0.09 2.27 8.14 -2.39 -0.02 2.25 16 43 H 0.06 2.10 8.14 -2.38 -0.02 2.08 16 Total: -1.00 -67.72 351.87 2.55 -65.17 By element: Atomic # 1 Polarization: 16.66 SS G_CDS: 0.20 Total: 16.85 kcal Atomic # 6 Polarization: -6.07 SS G_CDS: 4.84 Total: -1.23 kcal Atomic # 7 Polarization: -102.93 SS G_CDS: -4.47 Total: -107.40 kcal Atomic # 8 Polarization: -20.33 SS G_CDS: -0.05 Total: -20.38 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 2.03 Total: 46.98 kcal Total: -67.72 2.55 -65.17 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001001173932.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.365 kcal (2) G-P(sol) polarization free energy of solvation -67.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.169 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds