Wall clock time and date at job start Tue Mar 31 2020 00:04:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47453 * 2 1 4 4 C 1.52999 * 109.47064 * 120.00397 * 2 1 3 5 5 H 1.09000 * 115.56070 * 325.67949 * 4 2 1 6 6 C 1.52998 * 117.50096 * 111.37512 * 4 2 1 7 7 C 1.52999 * 117.49718 * 179.97438 * 4 2 1 8 8 H 1.08995 * 117.52186 * 359.97438 * 7 4 2 9 9 C 1.50706 * 117.49661 * 145.01983 * 7 4 2 10 10 O 1.21270 * 120.00233 * 0.02562 * 9 7 4 11 11 N 1.34775 * 119.99680 * 180.02562 * 9 7 4 12 12 C 1.46496 * 119.99922 * 179.97438 * 11 9 7 13 13 H 1.08997 * 115.49786 * 9.61639 * 12 11 9 14 14 C 1.53005 * 117.44242 * 224.23642 * 12 11 9 15 15 H 1.08999 * 120.26245 * 3.83206 * 14 12 11 16 16 C 1.54387 * 118.12279 * 160.80857 * 14 12 11 17 17 N 1.48138 * 104.61989 * 87.19159 * 16 14 12 18 18 C 1.36938 * 127.84208 * 140.41512 * 17 16 14 19 19 H 1.08004 * 120.00288 * 195.57573 * 18 17 16 20 20 C 1.38812 * 119.99830 * 15.56928 * 18 17 16 21 21 N 1.31624 * 119.99900 * 9.10372 * 20 18 17 22 22 Si 1.86805 * 120.00196 * 189.09920 * 20 18 17 23 23 H 1.48499 * 109.46586 * 60.00261 * 22 20 18 24 24 H 1.48498 * 109.47239 * 180.02562 * 22 20 18 25 25 H 1.48504 * 109.47044 * 300.00533 * 22 20 18 26 26 C 1.48151 * 104.32448 * 320.41632 * 17 16 14 27 27 C 1.53004 * 117.44609 * 154.99964 * 12 11 9 28 28 H 1.09005 * 120.26130 * 356.16803 * 27 12 11 29 29 H 1.08995 * 109.47713 * 180.02562 * 1 2 3 30 30 H 1.09007 * 109.46783 * 300.00490 * 1 2 3 31 31 H 1.09004 * 109.47187 * 59.99638 * 1 2 3 32 32 H 1.09001 * 109.46912 * 239.99953 * 2 1 3 33 33 H 1.08999 * 109.47059 * 180.02562 * 3 2 1 34 34 H 1.09001 * 109.46755 * 300.00168 * 3 2 1 35 35 H 1.08995 * 109.47239 * 59.99660 * 3 2 1 36 36 H 1.08991 * 117.50068 * 359.97438 * 6 4 2 37 37 H 1.09004 * 117.51663 * 214.96862 * 6 4 2 38 38 H 0.97003 * 119.99965 * 359.97438 * 11 9 7 39 39 H 1.09007 * 110.40927 * 328.40359 * 16 14 12 40 40 H 1.08998 * 110.40786 * 205.97812 * 16 14 12 41 41 H 0.96999 * 119.99596 * 179.97438 * 21 20 18 42 42 H 1.09002 * 110.40291 * 280.79957 * 26 17 16 43 43 H 1.08998 * 110.50893 * 158.41815 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.4310 -0.5983 2.1448 6 6 2.7418 -2.0664 1.0513 7 6 3.5550 -0.8287 1.4339 8 1 4.1886 -0.3860 0.6655 9 6 4.0913 -0.7559 2.8404 10 8 3.3293 -0.6177 3.7736 11 7 5.4179 -0.8446 3.0611 12 6 5.9394 -0.7733 4.4282 13 1 5.1902 -0.8128 5.2188 14 6 7.1721 0.1009 4.6680 15 1 7.5935 0.6912 3.8545 16 6 7.4711 0.5567 6.1125 17 7 8.2792 -0.5416 6.6914 18 6 9.3619 -0.4395 7.5236 19 1 10.0105 -1.2901 7.6729 20 6 9.6259 0.7574 8.1752 21 7 8.7453 1.7350 8.1383 22 14 11.2309 0.9808 9.1045 23 1 12.3717 0.8235 8.1668 24 1 11.2689 2.3371 9.7080 25 1 11.3278 -0.0410 10.1777 26 6 7.6504 -1.7758 6.1657 27 6 7.2903 -1.4370 4.7032 28 1 7.7999 -1.9924 3.9157 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 3.1300 1.4424 -0.0005 34 1 1.6767 1.9562 -0.8900 35 1 1.6767 1.9563 0.8899 36 1 2.8398 -2.4376 0.0312 37 1 2.5949 -2.8285 1.8166 38 1 6.0274 -0.9555 2.3146 39 1 6.5436 0.6815 6.6714 40 1 8.0408 1.4859 6.1075 41 1 8.9297 2.5712 8.5939 42 1 6.7509 -2.0153 6.7330 43 1 8.3538 -2.6077 6.2010 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026128731.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:04:11 Heat of formation + Delta-G solvation = 33.423853 kcal Electronic energy + Delta-G solvation = -21227.105178 eV Core-core repulsion = 18081.343387 eV Total energy + Delta-G solvation = -3145.761791 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.16387 -38.76306 -37.37226 -34.43247 -33.54384 -32.56563 -30.24586 -27.43483 -27.14539 -25.98844 -24.52081 -23.11071 -21.62019 -20.49030 -20.18662 -19.68189 -19.25978 -17.25992 -16.85886 -16.30516 -15.36275 -15.04409 -14.71069 -14.44175 -14.23679 -13.64969 -13.38031 -13.25117 -12.88355 -12.75780 -12.63277 -12.42813 -12.20285 -11.60315 -11.55381 -11.46641 -11.38023 -10.99299 -10.92909 -10.81257 -10.49314 -10.39118 -10.27117 -10.20065 -10.16928 -9.75995 -9.70633 -9.15737 -8.73580 -8.31258 -6.86522 -5.78912 -3.13586 2.50295 3.08727 3.39337 3.43507 3.45027 3.63674 4.30869 4.33171 4.47843 4.52138 4.58978 4.77983 4.97279 5.02494 5.08102 5.16794 5.32675 5.37853 5.40157 5.41332 5.46952 5.57525 5.60981 5.63501 5.72572 5.83597 5.83955 5.90619 5.90888 6.04211 6.17013 6.19486 6.27062 6.52351 6.68652 6.83630 6.89239 7.37232 7.54184 7.62314 7.71970 8.21205 8.33181 9.11242 9.74047 10.51212 11.35312 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.043058 B = 0.002891 C = 0.002800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 650.126627 B = 9683.697932 C = 9996.682958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.066 4.066 3 C -0.148 4.148 4 C -0.112 4.112 5 H 0.118 0.882 6 C -0.149 4.149 7 C -0.187 4.187 8 H 0.122 0.878 9 C 0.544 3.456 10 O -0.539 6.539 11 N -0.694 5.694 12 C 0.100 3.900 13 H 0.131 0.869 14 C -0.182 4.182 15 H 0.102 0.898 16 C 0.185 3.815 17 N -0.593 5.593 18 C -0.229 4.229 19 H 0.077 0.923 20 C -0.005 4.005 21 N -0.915 5.915 22 Si 0.914 3.086 23 H -0.284 1.284 24 H -0.290 1.290 25 H -0.283 1.283 26 C 0.156 3.844 27 C -0.184 4.184 28 H 0.103 0.897 29 H 0.056 0.944 30 H 0.057 0.943 31 H 0.055 0.945 32 H 0.070 0.930 33 H 0.055 0.945 34 H 0.054 0.946 35 H 0.058 0.942 36 H 0.103 0.897 37 H 0.099 0.901 38 H 0.399 0.601 39 H 0.026 0.974 40 H 0.091 0.909 41 H 0.255 0.745 42 H 0.027 0.973 43 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.089 -4.847 -18.851 22.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.085 4.085 3 C -0.205 4.205 4 C -0.131 4.131 5 H 0.136 0.864 6 C -0.187 4.187 7 C -0.209 4.209 8 H 0.140 0.860 9 C 0.330 3.670 10 O -0.416 6.416 11 N -0.342 5.342 12 C -0.006 4.006 13 H 0.149 0.851 14 C -0.204 4.204 15 H 0.120 0.880 16 C 0.059 3.941 17 N -0.316 5.316 18 C -0.357 4.357 19 H 0.094 0.906 20 C -0.203 4.203 21 N -0.561 5.561 22 Si 0.744 3.256 23 H -0.211 1.211 24 H -0.215 1.215 25 H -0.210 1.210 26 C 0.029 3.971 27 C -0.206 4.206 28 H 0.121 0.879 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.074 0.926 32 H 0.089 0.911 33 H 0.074 0.926 34 H 0.073 0.927 35 H 0.077 0.923 36 H 0.121 0.879 37 H 0.118 0.882 38 H 0.233 0.767 39 H 0.044 0.956 40 H 0.109 0.891 41 H 0.065 0.935 42 H 0.044 0.956 43 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -12.490 -4.569 -17.968 22.355 hybrid contribution 1.374 0.127 -0.019 1.380 sum -11.116 -4.442 -17.987 21.606 Atomic orbital electron populations 1.21804 0.94592 1.01884 1.01920 1.20741 0.96017 0.96062 0.95657 1.21832 1.01180 0.95579 1.01895 1.22481 0.91945 0.98318 1.00347 0.86371 1.23078 1.01788 0.90973 1.02832 1.22253 0.96358 1.06330 0.95917 0.86031 1.19605 0.82004 0.75727 0.89626 1.90698 1.57172 1.49039 1.44646 1.45316 1.07005 1.73396 1.08498 1.21837 0.90819 1.03717 0.84225 0.85134 1.24723 0.99733 0.93528 1.02391 0.88023 1.21061 0.94554 0.93777 0.84738 1.45176 1.32827 0.99440 1.54192 1.18945 1.00133 0.98182 1.18420 0.90574 1.24914 0.98640 0.97374 0.99342 1.69895 1.33862 1.05445 1.46870 0.86180 0.82914 0.77020 0.79515 1.21095 1.21529 1.20956 1.21117 0.95866 0.91146 0.88993 1.24313 0.98369 0.97453 1.00415 0.87877 0.92518 0.92373 0.92618 0.91126 0.92603 0.92699 0.92274 0.87913 0.88228 0.76749 0.95624 0.89112 0.93456 0.95564 0.92974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.00 9.18 37.16 0.34 -0.66 16 2 C -0.07 -0.50 3.07 -90.62 -0.28 -0.78 16 3 C -0.15 -1.16 9.03 37.16 0.34 -0.83 16 4 C -0.11 -1.08 4.66 -90.62 -0.42 -1.50 16 5 H 0.12 1.38 7.64 -51.93 -0.40 0.98 16 6 C -0.15 -1.28 9.88 -26.76 -0.26 -1.54 16 7 C -0.19 -1.90 5.39 -91.79 -0.49 -2.39 16 8 H 0.12 0.98 7.61 -51.93 -0.40 0.59 16 9 C 0.54 7.83 7.61 -10.98 -0.08 7.75 16 10 O -0.54 -10.03 15.82 5.57 0.09 -9.94 16 11 N -0.69 -9.57 5.56 -53.81 -0.30 -9.87 16 12 C 0.10 1.73 5.98 -67.93 -0.41 1.32 16 13 H 0.13 2.58 7.40 -51.93 -0.38 2.20 16 14 C -0.18 -3.53 7.06 -89.22 -0.63 -4.16 16 15 H 0.10 1.83 8.14 -51.93 -0.42 1.41 16 16 C 0.18 4.55 5.70 -2.41 -0.01 4.54 16 17 N -0.59 -15.40 3.38 -168.86 -0.57 -15.97 16 18 C -0.23 -6.42 10.35 -15.06 -0.16 -6.57 16 19 H 0.08 2.05 7.85 -52.48 -0.41 1.64 16 20 C -0.01 -0.15 5.40 -17.43 -0.09 -0.25 16 21 N -0.91 -27.09 10.86 55.49 0.60 -26.49 16 22 Si 0.91 22.02 29.56 -169.99 -5.03 16.99 16 23 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 24 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 25 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 26 C 0.16 3.32 7.04 -2.41 -0.02 3.30 16 27 C -0.18 -3.30 7.05 -89.22 -0.63 -3.93 16 28 H 0.10 1.62 8.14 -51.93 -0.42 1.19 16 29 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.07 0.47 7.90 -51.93 -0.41 0.06 16 33 H 0.05 0.45 7.29 -51.93 -0.38 0.07 16 34 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 35 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 36 H 0.10 0.66 8.05 -51.93 -0.42 0.24 16 37 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 38 H 0.40 4.29 8.83 -40.82 -0.36 3.93 16 39 H 0.03 0.68 8.14 -51.92 -0.42 0.25 16 40 H 0.09 2.47 6.51 -51.93 -0.34 2.14 16 41 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 42 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 LS Contribution 350.86 15.07 5.29 5.29 Total: -1.00 -32.08 350.86 -10.01 -42.09 By element: Atomic # 1 Polarization: 10.89 SS G_CDS: -7.28 Total: 3.61 kcal Atomic # 6 Polarization: -2.89 SS G_CDS: -2.81 Total: -5.70 kcal Atomic # 7 Polarization: -52.07 SS G_CDS: -0.27 Total: -52.33 kcal Atomic # 8 Polarization: -10.03 SS G_CDS: 0.09 Total: -9.94 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.03 Total: 16.99 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -32.08 -10.01 -42.09 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026128731.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.517 kcal (2) G-P(sol) polarization free energy of solvation -32.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.093 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds