Wall clock time and date at job start Tue Mar 31 2020 00:04:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47453 * 2 1 4 4 C 1.52999 * 109.47064 * 120.00397 * 2 1 3 5 5 H 1.09000 * 115.56070 * 325.67949 * 4 2 1 6 6 C 1.52998 * 117.50096 * 111.37512 * 4 2 1 7 7 C 1.52999 * 117.49718 * 179.97438 * 4 2 1 8 8 H 1.08995 * 117.52186 * 359.97438 * 7 4 2 9 9 C 1.50706 * 117.49661 * 145.01983 * 7 4 2 10 10 O 1.21270 * 120.00233 * 0.02562 * 9 7 4 11 11 N 1.34775 * 119.99680 * 180.02562 * 9 7 4 12 12 C 1.46496 * 119.99922 * 179.97438 * 11 9 7 13 13 H 1.08997 * 115.49786 * 9.61639 * 12 11 9 14 14 C 1.53005 * 117.44242 * 224.23642 * 12 11 9 15 15 H 1.08999 * 120.26245 * 3.83206 * 14 12 11 16 16 C 1.54387 * 118.12279 * 160.80857 * 14 12 11 17 17 N 1.48138 * 104.61989 * 87.19159 * 16 14 12 18 18 C 1.36938 * 127.84208 * 140.41512 * 17 16 14 19 19 H 1.08004 * 120.00288 * 195.57573 * 18 17 16 20 20 C 1.38812 * 119.99830 * 15.56928 * 18 17 16 21 21 N 1.31624 * 119.99900 * 9.10372 * 20 18 17 22 22 Si 1.86805 * 120.00196 * 189.09920 * 20 18 17 23 23 H 1.48499 * 109.46586 * 60.00261 * 22 20 18 24 24 H 1.48498 * 109.47239 * 180.02562 * 22 20 18 25 25 H 1.48504 * 109.47044 * 300.00533 * 22 20 18 26 26 C 1.48151 * 104.32448 * 320.41632 * 17 16 14 27 27 C 1.53004 * 117.44609 * 154.99964 * 12 11 9 28 28 H 1.09005 * 120.26130 * 356.16803 * 27 12 11 29 29 H 1.08995 * 109.47713 * 180.02562 * 1 2 3 30 30 H 1.09007 * 109.46783 * 300.00490 * 1 2 3 31 31 H 1.09004 * 109.47187 * 59.99638 * 1 2 3 32 32 H 1.09001 * 109.46912 * 239.99953 * 2 1 3 33 33 H 1.08999 * 109.47059 * 180.02562 * 3 2 1 34 34 H 1.09001 * 109.46755 * 300.00168 * 3 2 1 35 35 H 1.08995 * 109.47239 * 59.99660 * 3 2 1 36 36 H 1.08991 * 117.50068 * 359.97438 * 6 4 2 37 37 H 1.09004 * 117.51663 * 214.96862 * 6 4 2 38 38 H 0.97003 * 119.99965 * 359.97438 * 11 9 7 39 39 H 1.09007 * 110.40927 * 328.40359 * 16 14 12 40 40 H 1.08998 * 110.40786 * 205.97812 * 16 14 12 41 41 H 0.96999 * 119.99596 * 179.97438 * 21 20 18 42 42 H 1.09002 * 110.40291 * 280.79957 * 26 17 16 43 43 H 1.08998 * 110.50893 * 158.41815 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.4310 -0.5983 2.1448 6 6 2.7418 -2.0664 1.0513 7 6 3.5550 -0.8287 1.4339 8 1 4.1886 -0.3860 0.6655 9 6 4.0913 -0.7559 2.8404 10 8 3.3293 -0.6177 3.7736 11 7 5.4179 -0.8446 3.0611 12 6 5.9394 -0.7733 4.4282 13 1 5.1902 -0.8128 5.2188 14 6 7.1721 0.1009 4.6680 15 1 7.5935 0.6912 3.8545 16 6 7.4711 0.5567 6.1125 17 7 8.2792 -0.5416 6.6914 18 6 9.3619 -0.4395 7.5236 19 1 10.0105 -1.2901 7.6729 20 6 9.6259 0.7574 8.1752 21 7 8.7453 1.7350 8.1383 22 14 11.2309 0.9808 9.1045 23 1 12.3717 0.8235 8.1668 24 1 11.2689 2.3371 9.7080 25 1 11.3278 -0.0410 10.1777 26 6 7.6504 -1.7758 6.1657 27 6 7.2903 -1.4370 4.7032 28 1 7.7999 -1.9924 3.9157 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 3.1300 1.4424 -0.0005 34 1 1.6767 1.9562 -0.8900 35 1 1.6767 1.9563 0.8899 36 1 2.8398 -2.4376 0.0312 37 1 2.5949 -2.8285 1.8166 38 1 6.0274 -0.9555 2.3146 39 1 6.5436 0.6815 6.6714 40 1 8.0408 1.4859 6.1075 41 1 8.9297 2.5712 8.5939 42 1 6.7509 -2.0153 6.7330 43 1 8.3538 -2.6077 6.2010 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001026128731.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:04:11 Heat of formation + Delta-G solvation = 13.784486 kcal Electronic energy + Delta-G solvation = -21227.956805 eV Core-core repulsion = 18081.343387 eV Total energy + Delta-G solvation = -3146.613418 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.34354 -40.18456 -38.37214 -36.08381 -34.42819 -34.08760 -32.10031 -28.96026 -28.03084 -27.78291 -25.74631 -23.79279 -23.25187 -21.98217 -21.26410 -20.88988 -20.55902 -18.88778 -18.28609 -17.67903 -16.76880 -16.17407 -16.09185 -15.54026 -15.50252 -15.03876 -14.87046 -14.67060 -13.97541 -13.79756 -13.64350 -13.43917 -13.37331 -13.22332 -12.99545 -12.91881 -12.68565 -12.18699 -12.15060 -12.08682 -12.03264 -11.90111 -11.68402 -11.54499 -11.23466 -11.04246 -10.92630 -10.80242 -10.68787 -9.73934 -8.95175 -7.93136 -5.30905 1.40252 1.45863 1.49609 1.56410 1.92086 2.47617 2.74353 2.92289 3.26641 3.51142 3.62499 3.75815 3.80758 3.84863 3.91424 4.08544 4.12068 4.20341 4.36293 4.41734 4.46586 4.49964 4.69654 4.78268 4.85798 4.86031 4.91788 4.96379 4.97826 5.05922 5.09589 5.24521 5.25530 5.30182 5.39656 5.42946 5.45751 5.52226 5.56822 5.61290 6.14168 6.52528 6.97550 7.22264 7.65115 8.43597 9.20685 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.043058 B = 0.002891 C = 0.002800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 650.126627 B = 9683.697932 C = 9996.682958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.060 4.060 3 C -0.149 4.149 4 C -0.120 4.120 5 H 0.087 0.913 6 C -0.130 4.130 7 C -0.188 4.188 8 H 0.153 0.847 9 C 0.539 3.461 10 O -0.589 6.589 11 N -0.679 5.679 12 C 0.118 3.882 13 H 0.101 0.899 14 C -0.187 4.187 15 H 0.123 0.877 16 C 0.189 3.811 17 N -0.617 5.617 18 C -0.243 4.243 19 H 0.085 0.915 20 C -0.065 4.065 21 N -0.950 5.950 22 Si 0.985 3.015 23 H -0.274 1.274 24 H -0.295 1.295 25 H -0.274 1.274 26 C 0.147 3.853 27 C -0.158 4.158 28 H 0.143 0.857 29 H 0.060 0.940 30 H 0.043 0.957 31 H 0.068 0.932 32 H 0.093 0.907 33 H 0.056 0.944 34 H 0.068 0.932 35 H 0.039 0.961 36 H 0.137 0.863 37 H 0.087 0.913 38 H 0.419 0.581 39 H -0.009 1.009 40 H 0.058 0.942 41 H 0.250 0.750 42 H 0.017 0.983 43 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.294 -6.380 -21.984 25.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.078 4.078 3 C -0.206 4.206 4 C -0.139 4.139 5 H 0.106 0.894 6 C -0.167 4.167 7 C -0.209 4.209 8 H 0.170 0.830 9 C 0.328 3.672 10 O -0.469 6.469 11 N -0.328 5.328 12 C 0.011 3.989 13 H 0.119 0.881 14 C -0.209 4.209 15 H 0.141 0.859 16 C 0.063 3.937 17 N -0.341 5.341 18 C -0.372 4.372 19 H 0.103 0.897 20 C -0.259 4.259 21 N -0.598 5.598 22 Si 0.812 3.188 23 H -0.199 1.199 24 H -0.221 1.221 25 H -0.200 1.200 26 C 0.021 3.979 27 C -0.178 4.178 28 H 0.160 0.840 29 H 0.079 0.921 30 H 0.062 0.938 31 H 0.087 0.913 32 H 0.111 0.889 33 H 0.075 0.925 34 H 0.087 0.913 35 H 0.058 0.942 36 H 0.155 0.845 37 H 0.106 0.894 38 H 0.257 0.743 39 H 0.009 0.991 40 H 0.076 0.924 41 H 0.059 0.941 42 H 0.035 0.965 43 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -11.687 -6.143 -21.155 24.937 hybrid contribution 1.025 0.568 1.008 1.546 sum -10.662 -5.575 -20.147 23.466 Atomic orbital electron populations 1.21811 0.94371 1.02188 1.01881 1.20746 0.96188 0.95644 0.95232 1.21854 1.01260 0.95897 1.01635 1.22482 0.91214 0.99873 1.00293 0.89427 1.23200 0.99448 0.89868 1.04213 1.22264 0.96895 1.08269 0.93474 0.82989 1.20441 0.81565 0.74198 0.91039 1.90688 1.58354 1.51182 1.46726 1.45129 1.07396 1.72902 1.07394 1.21352 0.89691 1.02155 0.85725 0.88116 1.24403 1.02130 0.94826 0.99514 0.85923 1.20770 0.92359 0.92800 0.87812 1.45488 1.32778 1.01336 1.54472 1.19393 1.00811 0.98504 1.18442 0.89700 1.25827 1.02077 0.97181 1.00766 1.70114 1.35850 1.05734 1.48070 0.85071 0.78868 0.76569 0.78311 1.19927 1.22094 1.20004 1.21284 0.95622 0.90093 0.90881 1.24229 0.98485 0.96007 0.99123 0.83977 0.92068 0.93770 0.91326 0.88886 0.92463 0.91305 0.94226 0.84513 0.89412 0.74302 0.99099 0.92393 0.94093 0.96501 0.91348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.77 9.18 71.98 0.66 -1.11 16 2 C -0.06 -0.76 3.07 -10.80 -0.03 -0.79 16 3 C -0.15 -2.08 9.03 71.98 0.65 -1.42 16 4 C -0.12 -2.11 4.66 -10.79 -0.05 -2.16 16 5 H 0.09 2.11 7.64 -2.39 -0.02 2.09 16 6 C -0.13 -1.84 9.88 30.58 0.30 -1.53 16 7 C -0.19 -3.33 5.39 -11.55 -0.06 -3.39 16 8 H 0.15 1.79 7.61 -2.39 -0.02 1.78 16 9 C 0.54 14.95 7.61 87.66 0.67 15.61 16 10 O -0.59 -22.51 15.82 -3.00 -0.05 -22.56 16 11 N -0.68 -17.28 5.56 -442.54 -2.46 -19.74 16 12 C 0.12 4.02 5.98 45.00 0.27 4.28 16 13 H 0.10 4.13 7.40 -2.39 -0.02 4.12 16 14 C -0.19 -7.18 7.06 -9.89 -0.07 -7.25 16 15 H 0.12 4.20 8.14 -2.39 -0.02 4.18 16 16 C 0.19 9.70 5.70 86.54 0.49 10.19 16 17 N -0.62 -32.64 3.38 -688.16 -2.33 -34.97 16 18 C -0.24 -13.79 10.35 84.03 0.87 -12.92 16 19 H 0.09 4.54 7.85 -2.91 -0.02 4.51 16 20 C -0.07 -3.74 5.40 84.86 0.46 -3.29 16 21 N -0.95 -58.49 10.86 21.65 0.24 -58.26 16 22 Si 0.98 45.81 29.56 68.60 2.03 47.84 16 23 H -0.27 -12.14 7.11 99.48 0.71 -11.44 16 24 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16 25 H -0.27 -12.25 7.11 99.48 0.71 -11.55 16 26 C 0.15 6.20 7.04 86.53 0.61 6.81 16 27 C -0.16 -5.32 7.05 -9.89 -0.07 -5.39 16 28 H 0.14 3.79 8.14 -2.38 -0.02 3.77 16 29 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 30 H 0.04 0.65 8.14 -2.38 -0.02 0.63 16 31 H 0.07 0.66 8.14 -2.38 -0.02 0.64 16 32 H 0.09 0.82 7.90 -2.39 -0.02 0.80 16 33 H 0.06 0.77 7.29 -2.39 -0.02 0.75 16 34 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 35 H 0.04 0.69 8.14 -2.39 -0.02 0.67 16 36 H 0.14 1.06 8.05 -2.39 -0.02 1.04 16 37 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 38 H 0.42 7.39 8.83 -92.71 -0.82 6.57 16 39 H -0.01 -0.50 8.14 -2.38 -0.02 -0.52 16 40 H 0.06 3.33 6.51 -2.39 -0.02 3.31 16 41 H 0.25 14.92 8.31 -92.71 -0.77 14.15 16 42 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 43 H 0.07 2.65 8.14 -2.39 -0.02 2.63 16 Total: -1.00 -73.73 350.86 2.29 -71.43 By element: Atomic # 1 Polarization: 18.44 SS G_CDS: 0.17 Total: 18.61 kcal Atomic # 6 Polarization: -7.05 SS G_CDS: 4.69 Total: -2.35 kcal Atomic # 7 Polarization: -108.41 SS G_CDS: -4.55 Total: -112.97 kcal Atomic # 8 Polarization: -22.51 SS G_CDS: -0.05 Total: -22.56 kcal Atomic # 14 Polarization: 45.81 SS G_CDS: 2.03 Total: 47.84 kcal Total: -73.73 2.29 -71.43 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026128731.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.218 kcal (2) G-P(sol) polarization free energy of solvation -73.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.434 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds