Wall clock time and date at job start Tue Mar 31 2020 00:04:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53006 * 109.47408 * 2 1 4 4 C 1.53008 * 109.47324 * 120.00124 * 2 1 3 5 5 H 1.08998 * 115.54783 * 319.12584 * 4 2 1 6 6 C 1.52996 * 117.49951 * 173.45408 * 4 2 1 7 7 C 1.52995 * 60.03105 * 252.49784 * 6 4 2 8 8 H 1.08997 * 117.49976 * 252.51775 * 7 6 4 9 9 C 1.50704 * 117.49829 * 107.50266 * 7 6 4 10 10 O 1.21282 * 120.00179 * 243.75961 * 9 7 6 11 11 N 1.34777 * 119.99742 * 63.75001 * 9 7 6 12 12 C 1.46502 * 119.99504 * 180.02562 * 11 9 7 13 13 H 1.08997 * 115.52003 * 350.57971 * 12 11 9 14 14 C 1.53001 * 117.43898 * 205.17006 * 12 11 9 15 15 H 1.09006 * 119.54537 * 4.11944 * 14 12 11 16 16 C 1.54393 * 118.12513 * 160.80867 * 14 12 11 17 17 N 1.48010 * 104.64933 * 87.21317 * 16 14 12 18 18 C 1.36939 * 127.84067 * 140.40159 * 17 16 14 19 19 H 1.08000 * 120.00107 * 179.56913 * 18 17 16 20 20 C 1.38810 * 119.99949 * 359.57474 * 18 17 16 21 21 N 1.31617 * 120.00044 * 12.16621 * 20 18 17 22 22 Si 1.86799 * 120.00160 * 192.16836 * 20 18 17 23 23 H 1.48503 * 109.46862 * 359.97438 * 22 20 18 24 24 H 1.48495 * 109.47363 * 119.99612 * 22 20 18 25 25 H 1.48496 * 109.47371 * 239.99959 * 22 20 18 26 26 C 1.48144 * 104.32049 * 320.46426 * 17 16 14 27 27 C 1.53005 * 117.44323 * 136.00478 * 12 11 9 28 28 H 1.09002 * 119.53675 * 355.87487 * 27 12 11 29 29 H 1.09005 * 109.47349 * 308.36454 * 1 2 3 30 30 H 1.08995 * 109.47314 * 68.35903 * 1 2 3 31 31 H 1.08995 * 109.47367 * 188.36908 * 1 2 3 32 32 H 1.08999 * 109.47091 * 240.00071 * 2 1 3 33 33 H 1.08998 * 109.47121 * 180.02562 * 3 2 1 34 34 H 1.09002 * 109.46604 * 300.00383 * 3 2 1 35 35 H 1.08999 * 109.46936 * 59.99976 * 3 2 1 36 36 H 1.09004 * 117.49994 * 0.02562 * 6 4 2 37 37 H 1.09001 * 117.49678 * 144.99310 * 6 4 2 38 38 H 0.96992 * 120.00840 * 0.02562 * 11 9 7 39 39 H 1.08996 * 110.41097 * 205.97724 * 16 14 12 40 40 H 1.09004 * 110.40488 * 328.41140 * 16 14 12 41 41 H 0.97003 * 119.99760 * 180.02562 * 21 20 18 42 42 H 1.09007 * 110.40706 * 280.74401 * 26 17 16 43 43 H 1.09001 * 110.40662 * 158.32179 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 1 1.4957 -0.5095 2.1695 6 6 3.5467 -0.9636 1.3595 7 6 2.6037 -2.1331 1.0701 8 1 2.4299 -2.8500 1.8725 9 6 2.6140 -2.7069 -0.3234 10 8 1.6197 -2.6393 -1.0145 11 7 3.7284 -3.2950 -0.8017 12 6 3.7386 -3.8523 -2.1566 13 1 2.7694 -3.8968 -2.6533 14 6 4.7328 -4.9781 -2.4484 15 1 5.3471 -5.3756 -1.6404 16 6 4.4753 -5.8759 -3.6778 17 7 5.1257 -5.1664 -4.8022 18 6 5.8422 -5.7085 -5.8356 19 1 6.2592 -5.0676 -6.5984 20 6 6.0325 -7.0819 -5.9029 21 7 5.3360 -7.8818 -5.1236 22 14 7.2773 -7.7949 -7.0994 23 1 7.9236 -6.6928 -7.8564 24 1 8.3101 -8.5514 -6.3471 25 1 6.5873 -8.7070 -8.0465 26 6 4.8270 -3.7366 -4.5551 27 6 4.9646 -3.5682 -3.0267 28 1 5.7516 -2.9151 -2.6495 29 1 -0.3634 0.6379 0.8058 30 1 -0.3634 0.3790 -0.9552 31 1 -0.3634 -1.0167 0.1496 32 1 1.8933 -0.5138 -0.8900 33 1 3.1300 1.4425 -0.0005 34 1 1.6766 1.9563 -0.8900 35 1 1.6767 1.9563 0.8900 36 1 4.1746 -0.6087 0.5422 37 1 3.9935 -0.9111 2.3523 38 1 4.5236 -3.3493 -0.2490 39 1 4.9294 -6.8563 -3.5343 40 1 3.4050 -5.9746 -3.8588 41 1 5.4693 -8.8415 -5.1703 42 1 3.8118 -3.4998 -4.8738 43 1 5.5465 -3.1029 -5.0737 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026128732.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:04:15 Heat of formation + Delta-G solvation = 39.375190 kcal Electronic energy + Delta-G solvation = -21668.899916 eV Core-core repulsion = 18523.396194 eV Total energy + Delta-G solvation = -3145.503722 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.28347 -38.74341 -37.14421 -34.48105 -33.57893 -32.47595 -30.23419 -27.23575 -27.09302 -25.96115 -24.42793 -23.23827 -21.66817 -20.49003 -20.37186 -19.39685 -19.22443 -16.94733 -16.75464 -16.29821 -16.04070 -14.87907 -14.64110 -14.19235 -13.98686 -13.70297 -13.43747 -13.16073 -13.10537 -12.75632 -12.44072 -12.23625 -12.20431 -11.56770 -11.48342 -11.35104 -11.27054 -11.09533 -10.86105 -10.75109 -10.45851 -10.31019 -10.22983 -10.17111 -10.04001 -9.74964 -9.62790 -9.16001 -8.73287 -8.30668 -6.95970 -5.74816 -3.10637 2.63783 3.07187 3.38162 3.44047 3.46630 3.48519 4.30389 4.34327 4.46438 4.55350 4.65210 4.89279 5.03130 5.17717 5.18701 5.24686 5.38021 5.42081 5.42974 5.48831 5.56427 5.58093 5.71081 5.75265 5.79715 5.83872 5.91651 5.92358 6.08165 6.17338 6.25644 6.29573 6.37362 6.54011 6.67252 6.84684 6.88791 7.36840 7.55409 7.63061 7.76652 8.28460 8.33046 9.12311 9.74818 10.47376 11.33128 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.039462 B = 0.003217 C = 0.003169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 709.377971 B = 8700.859869 C = 8832.082164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.075 4.075 3 C -0.144 4.144 4 C -0.110 4.110 5 H 0.110 0.890 6 C -0.165 4.165 7 C -0.184 4.184 8 H 0.130 0.870 9 C 0.545 3.455 10 O -0.530 6.530 11 N -0.694 5.694 12 C 0.095 3.905 13 H 0.130 0.870 14 C -0.174 4.174 15 H 0.102 0.898 16 C 0.161 3.839 17 N -0.596 5.596 18 C -0.219 4.219 19 H 0.082 0.918 20 C -0.011 4.011 21 N -0.917 5.917 22 Si 0.913 3.087 23 H -0.279 1.279 24 H -0.289 1.289 25 H -0.291 1.291 26 C 0.157 3.843 27 C -0.186 4.186 28 H 0.101 0.899 29 H 0.047 0.953 30 H 0.052 0.948 31 H 0.060 0.940 32 H 0.084 0.916 33 H 0.052 0.948 34 H 0.054 0.946 35 H 0.052 0.948 36 H 0.099 0.901 37 H 0.102 0.898 38 H 0.399 0.601 39 H 0.125 0.875 40 H 0.017 0.983 41 H 0.254 0.746 42 H 0.027 0.973 43 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.058 14.493 15.139 21.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.093 4.093 3 C -0.201 4.201 4 C -0.129 4.129 5 H 0.128 0.872 6 C -0.202 4.202 7 C -0.205 4.205 8 H 0.148 0.852 9 C 0.331 3.669 10 O -0.406 6.406 11 N -0.342 5.342 12 C -0.011 4.011 13 H 0.148 0.852 14 C -0.195 4.195 15 H 0.120 0.880 16 C 0.035 3.965 17 N -0.319 5.319 18 C -0.347 4.347 19 H 0.099 0.901 20 C -0.207 4.207 21 N -0.565 5.565 22 Si 0.744 3.256 23 H -0.205 1.205 24 H -0.216 1.216 25 H -0.218 1.218 26 C 0.030 3.970 27 C -0.208 4.208 28 H 0.119 0.881 29 H 0.066 0.934 30 H 0.071 0.929 31 H 0.080 0.920 32 H 0.102 0.898 33 H 0.071 0.929 34 H 0.073 0.927 35 H 0.071 0.929 36 H 0.118 0.882 37 H 0.120 0.880 38 H 0.233 0.767 39 H 0.142 0.858 40 H 0.035 0.965 41 H 0.064 0.936 42 H 0.045 0.955 43 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -4.687 14.313 14.479 20.892 hybrid contribution 1.176 -0.487 -0.069 1.275 sum -3.511 13.826 14.410 20.276 Atomic orbital electron populations 1.21684 0.94606 1.02011 1.01045 1.20826 0.96444 0.95358 0.96680 1.21817 1.00853 0.95945 1.01502 1.22401 0.95534 0.94678 1.00283 0.87176 1.23101 0.93344 1.00283 1.03468 1.22333 1.08398 0.93285 0.96474 0.85202 1.19592 0.82887 0.77383 0.87079 1.90701 1.33418 1.57191 1.59303 1.45414 1.14748 1.58506 1.15541 1.21870 0.96564 1.00015 0.82663 0.85227 1.24671 1.01587 0.91765 1.01511 0.88024 1.21618 0.95465 0.97478 0.81939 1.45236 1.60950 0.99664 1.26022 1.19121 1.24067 0.90661 1.00869 0.90057 1.24782 1.00185 0.95703 1.00004 1.69696 1.41758 1.02857 1.42237 0.86013 0.80968 0.78857 0.79787 1.20459 1.21625 1.21789 1.21118 0.97878 0.88014 0.89947 1.24335 0.99557 1.00421 0.96491 0.88065 0.93418 0.92867 0.92048 0.89806 0.92853 0.92695 0.92881 0.88241 0.87959 0.76711 0.85789 0.96544 0.93565 0.95518 0.93016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.43 9.21 37.16 0.34 -1.08 16 2 C -0.07 -0.80 2.40 -90.62 -0.22 -1.01 16 3 C -0.14 -1.27 9.09 37.16 0.34 -0.94 16 4 C -0.11 -1.01 5.05 -90.58 -0.46 -1.47 16 5 H 0.11 0.85 8.14 -51.93 -0.42 0.43 16 6 C -0.16 -1.31 9.55 -26.74 -0.26 -1.57 16 7 C -0.18 -1.84 6.14 -91.74 -0.56 -2.40 16 8 H 0.13 1.10 8.14 -51.93 -0.42 0.67 16 9 C 0.54 7.59 6.50 -10.98 -0.07 7.52 16 10 O -0.53 -9.36 14.68 5.56 0.08 -9.28 16 11 N -0.69 -9.44 5.56 -53.80 -0.30 -9.74 16 12 C 0.09 1.62 5.98 -67.93 -0.41 1.22 16 13 H 0.13 2.52 7.40 -51.93 -0.38 2.14 16 14 C -0.17 -3.35 7.05 -89.29 -0.63 -3.98 16 15 H 0.10 1.81 8.14 -51.93 -0.42 1.39 16 16 C 0.16 3.92 6.12 -2.48 -0.02 3.91 16 17 N -0.60 -15.37 3.39 -168.97 -0.57 -15.94 16 18 C -0.22 -6.11 10.39 -15.06 -0.16 -6.27 16 19 H 0.08 2.18 7.86 -52.49 -0.41 1.77 16 20 C -0.01 -0.31 5.45 -17.43 -0.10 -0.41 16 21 N -0.92 -26.64 10.32 55.49 0.57 -26.07 16 22 Si 0.91 21.87 29.57 -169.99 -5.03 16.85 16 23 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 24 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 25 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 26 C 0.16 3.35 7.04 -2.41 -0.02 3.34 16 27 C -0.19 -3.38 7.05 -89.29 -0.63 -4.01 16 28 H 0.10 1.65 8.14 -51.93 -0.42 1.23 16 29 H 0.05 0.41 8.13 -51.93 -0.42 -0.01 16 30 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.06 0.73 8.13 -51.93 -0.42 0.30 16 32 H 0.08 1.15 5.64 -51.93 -0.29 0.85 16 33 H 0.05 0.45 7.76 -51.93 -0.40 0.05 16 34 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.10 0.85 8.03 -51.93 -0.42 0.43 16 37 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.40 4.39 8.83 -40.82 -0.36 4.03 16 39 H 0.12 3.38 5.51 -51.93 -0.29 3.09 16 40 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 42 H 0.03 0.58 8.14 -51.93 -0.42 0.15 16 43 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 LS Contribution 347.00 15.07 5.23 5.23 Total: -1.00 -31.05 347.00 -10.03 -41.08 By element: Atomic # 1 Polarization: 12.22 SS G_CDS: -7.19 Total: 5.04 kcal Atomic # 6 Polarization: -4.33 SS G_CDS: -2.83 Total: -7.16 kcal Atomic # 7 Polarization: -51.46 SS G_CDS: -0.30 Total: -51.76 kcal Atomic # 8 Polarization: -9.36 SS G_CDS: 0.08 Total: -9.28 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.03 Total: 16.85 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -31.05 -10.03 -41.08 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026128732.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.458 kcal (2) G-P(sol) polarization free energy of solvation -31.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.082 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds