Wall clock time and date at job start Tue Mar 31 2020 00:04:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53006 * 109.47408 * 2 1 4 4 C 1.53008 * 109.47324 * 120.00124 * 2 1 3 5 5 H 1.08998 * 115.54783 * 319.12584 * 4 2 1 6 6 C 1.52996 * 117.49951 * 173.45408 * 4 2 1 7 7 C 1.52995 * 60.03105 * 252.49784 * 6 4 2 8 8 H 1.08997 * 117.49976 * 252.51775 * 7 6 4 9 9 C 1.50704 * 117.49829 * 107.50266 * 7 6 4 10 10 O 1.21282 * 120.00179 * 243.75961 * 9 7 6 11 11 N 1.34777 * 119.99742 * 63.75001 * 9 7 6 12 12 C 1.46502 * 119.99504 * 180.02562 * 11 9 7 13 13 H 1.08997 * 115.52003 * 350.57971 * 12 11 9 14 14 C 1.53001 * 117.43898 * 205.17006 * 12 11 9 15 15 H 1.09006 * 119.54537 * 4.11944 * 14 12 11 16 16 C 1.54393 * 118.12513 * 160.80867 * 14 12 11 17 17 N 1.48010 * 104.64933 * 87.21317 * 16 14 12 18 18 C 1.36939 * 127.84067 * 140.40159 * 17 16 14 19 19 H 1.08000 * 120.00107 * 179.56913 * 18 17 16 20 20 C 1.38810 * 119.99949 * 359.57474 * 18 17 16 21 21 N 1.31617 * 120.00044 * 12.16621 * 20 18 17 22 22 Si 1.86799 * 120.00160 * 192.16836 * 20 18 17 23 23 H 1.48503 * 109.46862 * 359.97438 * 22 20 18 24 24 H 1.48495 * 109.47363 * 119.99612 * 22 20 18 25 25 H 1.48496 * 109.47371 * 239.99959 * 22 20 18 26 26 C 1.48144 * 104.32049 * 320.46426 * 17 16 14 27 27 C 1.53005 * 117.44323 * 136.00478 * 12 11 9 28 28 H 1.09002 * 119.53675 * 355.87487 * 27 12 11 29 29 H 1.09005 * 109.47349 * 308.36454 * 1 2 3 30 30 H 1.08995 * 109.47314 * 68.35903 * 1 2 3 31 31 H 1.08995 * 109.47367 * 188.36908 * 1 2 3 32 32 H 1.08999 * 109.47091 * 240.00071 * 2 1 3 33 33 H 1.08998 * 109.47121 * 180.02562 * 3 2 1 34 34 H 1.09002 * 109.46604 * 300.00383 * 3 2 1 35 35 H 1.08999 * 109.46936 * 59.99976 * 3 2 1 36 36 H 1.09004 * 117.49994 * 0.02562 * 6 4 2 37 37 H 1.09001 * 117.49678 * 144.99310 * 6 4 2 38 38 H 0.96992 * 120.00840 * 0.02562 * 11 9 7 39 39 H 1.08996 * 110.41097 * 205.97724 * 16 14 12 40 40 H 1.09004 * 110.40488 * 328.41140 * 16 14 12 41 41 H 0.97003 * 119.99760 * 180.02562 * 21 20 18 42 42 H 1.09007 * 110.40706 * 280.74401 * 26 17 16 43 43 H 1.09001 * 110.40662 * 158.32179 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 1 1.4957 -0.5095 2.1695 6 6 3.5467 -0.9636 1.3595 7 6 2.6037 -2.1331 1.0701 8 1 2.4299 -2.8500 1.8725 9 6 2.6140 -2.7069 -0.3234 10 8 1.6197 -2.6393 -1.0145 11 7 3.7284 -3.2950 -0.8017 12 6 3.7386 -3.8523 -2.1566 13 1 2.7694 -3.8968 -2.6533 14 6 4.7328 -4.9781 -2.4484 15 1 5.3471 -5.3756 -1.6404 16 6 4.4753 -5.8759 -3.6778 17 7 5.1257 -5.1664 -4.8022 18 6 5.8422 -5.7085 -5.8356 19 1 6.2592 -5.0676 -6.5984 20 6 6.0325 -7.0819 -5.9029 21 7 5.3360 -7.8818 -5.1236 22 14 7.2773 -7.7949 -7.0994 23 1 7.9236 -6.6928 -7.8564 24 1 8.3101 -8.5514 -6.3471 25 1 6.5873 -8.7070 -8.0465 26 6 4.8270 -3.7366 -4.5551 27 6 4.9646 -3.5682 -3.0267 28 1 5.7516 -2.9151 -2.6495 29 1 -0.3634 0.6379 0.8058 30 1 -0.3634 0.3790 -0.9552 31 1 -0.3634 -1.0167 0.1496 32 1 1.8933 -0.5138 -0.8900 33 1 3.1300 1.4425 -0.0005 34 1 1.6766 1.9563 -0.8900 35 1 1.6767 1.9563 0.8900 36 1 4.1746 -0.6087 0.5422 37 1 3.9935 -0.9111 2.3523 38 1 4.5236 -3.3493 -0.2490 39 1 4.9294 -6.8563 -3.5343 40 1 3.4050 -5.9746 -3.8588 41 1 5.4693 -8.8415 -5.1703 42 1 3.8118 -3.4998 -4.8738 43 1 5.5465 -3.1029 -5.0737 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001026128732.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:04:14 Heat of formation + Delta-G solvation = 20.840392 kcal Electronic energy + Delta-G solvation = -21669.703645 eV Core-core repulsion = 18523.396194 eV Total energy + Delta-G solvation = -3146.307451 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.40384 -40.19369 -38.15759 -36.08767 -34.60974 -33.95563 -32.04986 -28.89595 -28.00140 -27.78146 -25.60251 -23.93687 -23.26285 -21.95848 -21.42631 -20.89836 -20.39172 -18.92218 -17.76213 -17.65193 -16.94612 -16.71474 -15.89606 -15.50746 -15.16712 -14.97384 -14.80293 -14.66448 -14.23410 -13.92937 -13.77191 -13.36442 -13.16999 -13.08701 -13.00358 -12.96900 -12.73822 -12.11504 -12.08510 -12.05980 -12.01831 -11.81175 -11.71470 -11.54626 -11.17394 -10.94261 -10.87745 -10.75695 -10.64418 -9.69666 -9.01880 -7.85754 -5.25031 1.47586 1.48552 1.53704 1.59599 1.95814 2.48108 2.74564 2.84155 3.26753 3.52681 3.61483 3.77388 3.85049 3.90910 3.93408 4.08950 4.13654 4.25556 4.35280 4.43715 4.50027 4.53164 4.74704 4.81070 4.83832 4.88558 4.93876 4.96185 4.97705 5.05696 5.06945 5.23225 5.26049 5.33048 5.39334 5.46834 5.48511 5.52678 5.58397 5.71586 6.23847 6.55356 7.01330 7.25340 7.67990 8.42313 9.21214 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.039462 B = 0.003217 C = 0.003169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 709.377971 B = 8700.859869 C = 8832.082164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.078 4.078 3 C -0.139 4.139 4 C -0.115 4.115 5 H 0.132 0.868 6 C -0.140 4.140 7 C -0.193 4.193 8 H 0.152 0.848 9 C 0.541 3.459 10 O -0.573 6.573 11 N -0.681 5.681 12 C 0.117 3.883 13 H 0.102 0.898 14 C -0.176 4.176 15 H 0.123 0.877 16 C 0.161 3.839 17 N -0.619 5.619 18 C -0.237 4.237 19 H 0.087 0.913 20 C -0.066 4.066 21 N -0.947 5.947 22 Si 0.983 3.017 23 H -0.265 1.265 24 H -0.288 1.288 25 H -0.294 1.294 26 C 0.150 3.850 27 C -0.169 4.169 28 H 0.133 0.867 29 H 0.069 0.931 30 H 0.043 0.957 31 H 0.041 0.959 32 H 0.048 0.952 33 H 0.057 0.943 34 H 0.048 0.952 35 H 0.069 0.931 36 H 0.095 0.905 37 H 0.133 0.867 38 H 0.417 0.583 39 H 0.095 0.905 40 H -0.012 1.012 41 H 0.250 0.750 42 H 0.019 0.981 43 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.585 16.389 17.323 23.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.096 4.096 3 C -0.196 4.196 4 C -0.134 4.134 5 H 0.150 0.850 6 C -0.177 4.177 7 C -0.214 4.214 8 H 0.169 0.831 9 C 0.329 3.671 10 O -0.452 6.452 11 N -0.331 5.331 12 C 0.010 3.990 13 H 0.120 0.880 14 C -0.197 4.197 15 H 0.141 0.859 16 C 0.035 3.965 17 N -0.343 5.343 18 C -0.365 4.365 19 H 0.104 0.896 20 C -0.259 4.259 21 N -0.597 5.597 22 Si 0.811 3.189 23 H -0.190 1.190 24 H -0.215 1.215 25 H -0.221 1.221 26 C 0.024 3.976 27 C -0.190 4.190 28 H 0.151 0.849 29 H 0.088 0.912 30 H 0.062 0.938 31 H 0.060 0.940 32 H 0.066 0.934 33 H 0.076 0.924 34 H 0.067 0.933 35 H 0.088 0.912 36 H 0.113 0.887 37 H 0.151 0.849 38 H 0.254 0.746 39 H 0.113 0.887 40 H 0.006 0.994 41 H 0.060 0.940 42 H 0.037 0.963 43 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -3.198 16.248 16.694 23.514 hybrid contribution 0.603 -1.039 -0.793 1.439 sum -2.595 15.209 15.902 22.156 Atomic orbital electron populations 1.21663 0.94912 1.01174 1.01403 1.20783 0.96294 0.96404 0.96146 1.21775 1.01103 0.94678 1.02073 1.22506 0.97052 0.93613 1.00180 0.85049 1.23217 0.92372 0.97269 1.04845 1.22318 1.10858 0.94237 0.93943 0.83093 1.20376 0.81889 0.76405 0.88383 1.90692 1.34994 1.58636 1.60883 1.45260 1.15763 1.58051 1.14052 1.21365 0.94793 0.98445 0.84390 0.87972 1.24340 1.03476 0.91399 1.00495 0.85938 1.21370 0.93356 0.97536 0.84196 1.45532 1.60977 1.01634 1.26113 1.19511 1.24090 0.91220 1.01692 0.89562 1.25646 1.01946 0.96085 1.02205 1.69929 1.43090 1.02733 1.43917 0.84944 0.78320 0.78050 0.77583 1.18963 1.21512 1.22114 1.21247 0.97666 0.86106 0.92553 1.24246 1.00745 0.99789 0.94258 0.84936 0.91187 0.93809 0.93994 0.93392 0.92372 0.93265 0.91185 0.88696 0.84914 0.74633 0.88695 0.99378 0.94021 0.96313 0.91808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.74 9.21 71.98 0.66 -2.08 16 2 C -0.08 -1.56 2.40 -10.79 -0.03 -1.59 16 3 C -0.14 -2.17 9.09 71.98 0.65 -1.52 16 4 C -0.12 -1.78 5.05 -10.77 -0.05 -1.83 16 5 H 0.13 1.51 8.14 -2.39 -0.02 1.49 16 6 C -0.14 -1.66 9.55 30.59 0.29 -1.37 16 7 C -0.19 -3.32 6.14 -11.52 -0.07 -3.39 16 8 H 0.15 2.01 8.14 -2.39 -0.02 1.99 16 9 C 0.54 14.52 6.50 87.66 0.57 15.09 16 10 O -0.57 -20.63 14.68 -3.04 -0.04 -20.68 16 11 N -0.68 -17.39 5.56 -442.52 -2.46 -19.85 16 12 C 0.12 3.98 5.98 44.99 0.27 4.25 16 13 H 0.10 4.13 7.40 -2.39 -0.02 4.11 16 14 C -0.18 -6.72 7.05 -9.93 -0.07 -6.79 16 15 H 0.12 4.18 8.14 -2.38 -0.02 4.16 16 16 C 0.16 8.18 6.12 86.56 0.53 8.71 16 17 N -0.62 -32.65 3.39 -688.50 -2.33 -34.98 16 18 C -0.24 -13.39 10.39 84.03 0.87 -12.52 16 19 H 0.09 4.64 7.86 -2.91 -0.02 4.62 16 20 C -0.07 -3.77 5.45 84.86 0.46 -3.31 16 21 N -0.95 -56.79 10.32 21.65 0.22 -56.56 16 22 Si 0.98 45.45 29.57 68.60 2.03 47.48 16 23 H -0.27 -11.52 7.11 99.48 0.71 -10.82 16 24 H -0.29 -13.20 7.11 99.48 0.71 -12.49 16 25 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16 26 C 0.15 6.42 7.04 86.53 0.61 7.03 16 27 C -0.17 -5.92 7.05 -9.93 -0.07 -5.99 16 28 H 0.13 3.87 8.14 -2.39 -0.02 3.85 16 29 H 0.07 1.08 8.13 -2.38 -0.02 1.06 16 30 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 31 H 0.04 1.00 8.13 -2.39 -0.02 0.98 16 32 H 0.05 1.32 5.64 -2.39 -0.01 1.30 16 33 H 0.06 0.84 7.76 -2.39 -0.02 0.83 16 34 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 35 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 36 H 0.09 1.26 8.03 -2.39 -0.02 1.25 16 37 H 0.13 0.85 8.14 -2.39 -0.02 0.83 16 38 H 0.42 7.86 8.83 -92.71 -0.82 7.04 16 39 H 0.10 5.41 5.51 -2.39 -0.01 5.40 16 40 H -0.01 -0.63 8.14 -2.39 -0.02 -0.65 16 41 H 0.25 14.44 8.31 -92.71 -0.77 13.67 16 42 H 0.02 0.84 8.14 -2.38 -0.02 0.82 16 43 H 0.06 2.54 8.14 -2.39 -0.02 2.52 16 Total: -1.00 -70.56 347.00 2.22 -68.34 By element: Atomic # 1 Polarization: 21.39 SS G_CDS: 0.17 Total: 21.57 kcal Atomic # 6 Polarization: -9.95 SS G_CDS: 4.63 Total: -5.32 kcal Atomic # 7 Polarization: -106.83 SS G_CDS: -4.57 Total: -111.40 kcal Atomic # 8 Polarization: -20.63 SS G_CDS: -0.04 Total: -20.68 kcal Atomic # 14 Polarization: 45.45 SS G_CDS: 2.03 Total: 47.48 kcal Total: -70.56 2.22 -68.34 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026128732.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.181 kcal (2) G-P(sol) polarization free energy of solvation -70.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.341 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds