Wall clock time and date at job start Tue Mar 31 2020 00:04:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.46926 * 2 1 4 4 C 1.52998 * 109.46839 * 240.00092 * 2 1 3 5 5 H 1.08999 * 115.54858 * 41.99549 * 4 2 1 6 6 C 1.53002 * 117.49799 * 187.66452 * 4 2 1 7 7 C 1.52994 * 117.50172 * 256.32786 * 4 2 1 8 8 H 1.09000 * 117.50493 * 145.02650 * 7 4 2 9 9 C 1.50706 * 117.49840 * 359.97438 * 7 4 2 10 10 O 1.21278 * 119.99788 * 37.31801 * 9 7 4 11 11 N 1.34772 * 119.99903 * 217.31811 * 9 7 4 12 12 C 1.46510 * 119.99674 * 180.02562 * 11 9 7 13 13 H 1.08996 * 115.51336 * 350.41080 * 12 11 9 14 14 C 1.52998 * 117.44118 * 204.99975 * 12 11 9 15 15 H 1.09003 * 119.53946 * 4.11307 * 14 12 11 16 16 C 1.54382 * 118.12029 * 159.21210 * 14 12 11 17 17 N 1.51832 * 102.87004 * 88.01918 * 16 14 12 18 18 C 1.36935 * 127.61458 * 140.54318 * 17 16 14 19 19 H 1.08004 * 119.99958 * 193.23982 * 18 17 16 20 20 C 1.38811 * 119.99847 * 13.23706 * 18 17 16 21 21 N 1.31614 * 120.00257 * 10.13508 * 20 18 17 22 22 Si 1.86808 * 119.99952 * 190.13949 * 20 18 17 23 23 H 1.48498 * 109.47148 * 89.99840 * 22 20 18 24 24 H 1.48503 * 109.46753 * 210.00014 * 22 20 18 25 25 H 1.48500 * 109.46689 * 329.99526 * 22 20 18 26 26 C 1.48149 * 104.54593 * 320.27190 * 17 16 14 27 27 C 1.52997 * 117.44076 * 135.75647 * 12 11 9 28 28 H 1.09001 * 119.54213 * 355.88370 * 27 12 11 29 29 H 1.08998 * 109.47405 * 55.18891 * 1 2 3 30 30 H 1.08999 * 109.46763 * 295.18938 * 1 2 3 31 31 H 1.08994 * 109.47115 * 175.19567 * 1 2 3 32 32 H 1.08998 * 109.47134 * 120.00557 * 2 1 3 33 33 H 1.08994 * 109.47002 * 60.00444 * 3 2 1 34 34 H 1.09001 * 109.46943 * 180.02562 * 3 2 1 35 35 H 1.09004 * 109.47237 * 300.00239 * 3 2 1 36 36 H 1.08999 * 117.49749 * 214.97989 * 6 4 2 37 37 H 1.08996 * 117.50021 * 359.97438 * 6 4 2 38 38 H 0.97000 * 120.00622 * 359.97438 * 11 9 7 39 39 H 1.09003 * 110.40538 * 205.97022 * 16 14 12 40 40 H 1.09006 * 110.41078 * 328.40289 * 16 14 12 41 41 H 0.96999 * 120.00310 * 180.02562 * 21 20 18 42 42 H 1.09006 * 110.40287 * 281.07113 * 26 17 16 43 43 H 1.09004 * 110.40522 * 158.64587 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 1 1.5076 -0.4948 -2.1730 6 6 3.5436 -0.9869 -1.3473 7 6 2.5779 -2.1428 -1.0743 8 1 2.3998 -2.8515 -1.8830 9 6 2.5654 -2.7253 0.3156 10 8 1.6424 -2.4862 1.0651 11 7 3.5800 -3.5119 0.7257 12 6 3.5676 -4.0786 2.0767 13 1 2.7953 -3.6913 2.7412 14 6 4.9160 -4.4442 2.7003 15 1 5.8364 -4.2152 2.1631 16 6 4.9968 -4.5706 4.2369 17 7 4.6218 -6.0221 4.4770 18 6 5.1712 -6.8882 5.3843 19 1 4.9668 -7.9463 5.3131 20 6 5.9909 -6.4061 6.3955 21 7 6.0822 -5.1103 6.6072 22 14 6.9645 -7.5966 7.4560 23 1 8.2917 -7.8401 6.8360 24 1 7.1498 -7.0156 8.8100 25 1 6.2259 -8.8802 7.5649 26 6 3.5261 -6.2873 3.5157 27 6 3.9520 -5.5519 2.2268 28 1 4.1542 -6.1479 1.3369 29 1 -0.3634 0.5866 -0.8437 30 1 -0.3633 0.4374 0.9299 31 1 -0.3633 -1.0240 -0.0861 32 1 1.8934 -0.5139 0.8899 33 1 1.6767 1.9563 0.8900 34 1 3.1300 1.4425 -0.0005 35 1 1.6766 1.9564 -0.8900 36 1 4.0003 -0.9356 -2.3357 37 1 4.1695 -0.6474 -0.5221 38 1 4.3182 -3.7035 0.1262 39 1 6.0125 -4.3762 4.5813 40 1 4.2955 -3.8845 4.7121 41 1 6.6553 -4.7734 7.3135 42 1 2.5856 -5.8835 3.8907 43 1 3.4342 -7.3575 3.3300 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026128733.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:04:18 Heat of formation + Delta-G solvation = 40.567143 kcal Electronic energy + Delta-G solvation = -21622.450400 eV Core-core repulsion = 18476.998365 eV Total energy + Delta-G solvation = -3145.452035 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.29511 -38.65768 -37.05516 -34.37725 -33.52454 -32.45020 -30.14880 -27.18674 -27.13688 -25.92425 -24.38982 -23.19237 -21.63573 -20.49197 -20.38583 -19.45563 -19.17518 -16.89241 -16.77235 -16.28036 -15.95526 -14.80676 -14.64187 -14.18392 -14.00223 -13.69696 -13.32470 -13.20338 -13.05517 -12.73162 -12.43155 -12.19374 -12.17458 -11.54717 -11.51556 -11.32799 -11.24749 -11.01458 -10.83106 -10.77521 -10.43737 -10.34983 -10.21711 -10.15203 -10.07420 -9.68798 -9.58043 -9.18286 -8.74120 -8.30968 -6.88881 -5.78085 -3.10613 2.60322 3.06943 3.39239 3.44320 3.46407 3.51868 4.31422 4.36424 4.47332 4.57622 4.65979 4.92799 5.04897 5.16051 5.22258 5.29216 5.35492 5.39148 5.44626 5.51319 5.56993 5.62279 5.73353 5.79591 5.79793 5.84313 5.89888 5.96449 6.13070 6.15123 6.22665 6.34415 6.46567 6.53741 6.69219 6.82190 6.89481 7.30580 7.51395 7.61850 7.70352 8.14929 8.32378 9.06973 9.73710 10.49924 11.36718 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.034560 B = 0.003240 C = 0.003170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 809.997090 B = 8639.878809 C = 8831.393910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.079 4.079 3 C -0.144 4.144 4 C -0.109 4.109 5 H 0.109 0.891 6 C -0.162 4.162 7 C -0.186 4.186 8 H 0.128 0.872 9 C 0.544 3.456 10 O -0.528 6.528 11 N -0.694 5.694 12 C 0.095 3.905 13 H 0.131 0.869 14 C -0.178 4.178 15 H 0.101 0.899 16 C 0.184 3.816 17 N -0.599 5.599 18 C -0.224 4.224 19 H 0.078 0.922 20 C -0.008 4.008 21 N -0.917 5.917 22 Si 0.912 3.088 23 H -0.289 1.289 24 H -0.291 1.291 25 H -0.280 1.280 26 C 0.159 3.841 27 C -0.183 4.183 28 H 0.102 0.898 29 H 0.045 0.955 30 H 0.052 0.948 31 H 0.059 0.941 32 H 0.093 0.907 33 H 0.054 0.946 34 H 0.052 0.948 35 H 0.050 0.950 36 H 0.102 0.898 37 H 0.100 0.900 38 H 0.399 0.601 39 H 0.094 0.906 40 H 0.031 0.969 41 H 0.254 0.746 42 H 0.026 0.974 43 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.459 9.440 -17.943 20.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.097 4.097 3 C -0.202 4.202 4 C -0.128 4.128 5 H 0.127 0.873 6 C -0.199 4.199 7 C -0.208 4.208 8 H 0.146 0.854 9 C 0.330 3.670 10 O -0.404 6.404 11 N -0.342 5.342 12 C -0.011 4.011 13 H 0.149 0.851 14 C -0.199 4.199 15 H 0.119 0.881 16 C 0.060 3.940 17 N -0.324 5.324 18 C -0.352 4.352 19 H 0.095 0.905 20 C -0.204 4.204 21 N -0.564 5.564 22 Si 0.743 3.257 23 H -0.216 1.216 24 H -0.217 1.217 25 H -0.206 1.206 26 C 0.032 3.968 27 C -0.204 4.204 28 H 0.120 0.880 29 H 0.064 0.936 30 H 0.071 0.929 31 H 0.078 0.922 32 H 0.111 0.889 33 H 0.073 0.927 34 H 0.071 0.929 35 H 0.070 0.930 36 H 0.120 0.880 37 H 0.118 0.882 38 H 0.233 0.767 39 H 0.112 0.888 40 H 0.049 0.951 41 H 0.064 0.936 42 H 0.044 0.956 43 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -5.986 9.575 -17.147 20.531 hybrid contribution 1.033 -0.838 0.020 1.330 sum -4.953 8.737 -17.126 19.854 Atomic orbital electron populations 1.21659 0.94742 1.01925 1.00802 1.20924 0.96394 0.95255 0.97110 1.21820 1.00829 0.96104 1.01405 1.22389 0.95656 0.94406 1.00317 0.87315 1.23095 0.93180 1.00125 1.03490 1.22312 1.08643 0.93347 0.96449 0.85411 1.19610 0.81833 0.78033 0.87547 1.90681 1.34940 1.59107 1.55693 1.45411 1.23866 1.49857 1.15086 1.21880 1.00255 0.94920 0.84045 0.85150 1.24582 0.92268 1.02587 1.00443 0.88084 1.21724 1.01934 0.85090 0.85268 1.46085 1.37074 1.08772 1.40420 1.19037 1.23656 0.88629 1.03926 0.90460 1.24841 1.01644 0.96142 0.97808 1.69880 1.41685 1.11016 1.33794 0.86112 0.80162 0.79903 0.79549 1.21579 1.21692 1.20598 1.21057 0.91419 0.96921 0.87425 1.24378 1.05326 0.90331 1.00393 0.87970 0.93618 0.92936 0.92170 0.88935 0.92714 0.92897 0.93042 0.87976 0.88188 0.76717 0.88811 0.95069 0.93589 0.95641 0.93017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.44 9.13 37.16 0.34 -1.10 16 2 C -0.08 -0.86 2.28 -90.62 -0.21 -1.07 16 3 C -0.14 -1.34 9.10 37.16 0.34 -1.00 16 4 C -0.11 -1.02 5.04 -90.62 -0.46 -1.47 16 5 H 0.11 0.85 8.14 -51.93 -0.42 0.43 16 6 C -0.16 -1.32 9.60 -26.69 -0.26 -1.57 16 7 C -0.19 -1.83 6.16 -91.73 -0.57 -2.40 16 8 H 0.13 1.03 8.14 -51.93 -0.42 0.60 16 9 C 0.54 7.44 6.87 -10.98 -0.08 7.36 16 10 O -0.53 -9.12 13.87 5.56 0.08 -9.05 16 11 N -0.69 -9.25 5.56 -53.80 -0.30 -9.54 16 12 C 0.09 1.60 5.97 -67.93 -0.41 1.19 16 13 H 0.13 2.50 7.40 -51.93 -0.38 2.12 16 14 C -0.18 -3.33 6.96 -89.22 -0.62 -3.95 16 15 H 0.10 1.73 8.14 -51.93 -0.42 1.31 16 16 C 0.18 4.42 5.95 -0.29 0.00 4.42 16 17 N -0.60 -15.44 3.45 -165.70 -0.57 -16.01 16 18 C -0.22 -6.28 10.36 -15.06 -0.16 -6.43 16 19 H 0.08 2.09 7.85 -52.48 -0.41 1.68 16 20 C -0.01 -0.21 5.41 -17.43 -0.09 -0.31 16 21 N -0.92 -26.86 10.79 55.49 0.60 -26.27 16 22 Si 0.91 21.98 29.57 -169.99 -5.03 16.96 16 23 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 24 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 25 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 26 C 0.16 3.39 7.05 -2.41 -0.02 3.37 16 27 C -0.18 -3.27 7.06 -89.22 -0.63 -3.90 16 28 H 0.10 1.64 8.14 -51.93 -0.42 1.22 16 29 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 31 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 32 H 0.09 1.31 5.34 -51.93 -0.28 1.03 16 33 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.05 0.47 7.87 -51.93 -0.41 0.07 16 35 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 36 H 0.10 0.63 8.14 -51.93 -0.42 0.20 16 37 H 0.10 0.90 8.11 -51.93 -0.42 0.48 16 38 H 0.40 4.25 8.83 -40.82 -0.36 3.89 16 39 H 0.09 2.49 6.50 -51.93 -0.34 2.15 16 40 H 0.03 0.79 8.14 -51.93 -0.42 0.36 16 41 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 42 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 LS Contribution 347.56 15.07 5.24 5.24 Total: -1.00 -31.21 347.56 -10.02 -41.23 By element: Atomic # 1 Polarization: 11.54 SS G_CDS: -7.23 Total: 4.31 kcal Atomic # 6 Polarization: -4.06 SS G_CDS: -2.81 Total: -6.87 kcal Atomic # 7 Polarization: -51.54 SS G_CDS: -0.27 Total: -51.82 kcal Atomic # 8 Polarization: -9.12 SS G_CDS: 0.08 Total: -9.05 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.03 Total: 16.96 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -31.21 -10.02 -41.23 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026128733.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.800 kcal (2) G-P(sol) polarization free energy of solvation -31.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.233 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds