Wall clock time and date at job start Tue Mar 31 2020 00:04:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.46926 * 2 1 4 4 C 1.52998 * 109.46839 * 240.00092 * 2 1 3 5 5 H 1.08999 * 115.54858 * 41.99549 * 4 2 1 6 6 C 1.53002 * 117.49799 * 187.66452 * 4 2 1 7 7 C 1.52994 * 117.50172 * 256.32786 * 4 2 1 8 8 H 1.09000 * 117.50493 * 145.02650 * 7 4 2 9 9 C 1.50706 * 117.49840 * 359.97438 * 7 4 2 10 10 O 1.21278 * 119.99788 * 37.31801 * 9 7 4 11 11 N 1.34772 * 119.99903 * 217.31811 * 9 7 4 12 12 C 1.46510 * 119.99674 * 180.02562 * 11 9 7 13 13 H 1.08996 * 115.51336 * 350.41080 * 12 11 9 14 14 C 1.52998 * 117.44118 * 204.99975 * 12 11 9 15 15 H 1.09003 * 119.53946 * 4.11307 * 14 12 11 16 16 C 1.54382 * 118.12029 * 159.21210 * 14 12 11 17 17 N 1.51832 * 102.87004 * 88.01918 * 16 14 12 18 18 C 1.36935 * 127.61458 * 140.54318 * 17 16 14 19 19 H 1.08004 * 119.99958 * 193.23982 * 18 17 16 20 20 C 1.38811 * 119.99847 * 13.23706 * 18 17 16 21 21 N 1.31614 * 120.00257 * 10.13508 * 20 18 17 22 22 Si 1.86808 * 119.99952 * 190.13949 * 20 18 17 23 23 H 1.48498 * 109.47148 * 89.99840 * 22 20 18 24 24 H 1.48503 * 109.46753 * 210.00014 * 22 20 18 25 25 H 1.48500 * 109.46689 * 329.99526 * 22 20 18 26 26 C 1.48149 * 104.54593 * 320.27190 * 17 16 14 27 27 C 1.52997 * 117.44076 * 135.75647 * 12 11 9 28 28 H 1.09001 * 119.54213 * 355.88370 * 27 12 11 29 29 H 1.08998 * 109.47405 * 55.18891 * 1 2 3 30 30 H 1.08999 * 109.46763 * 295.18938 * 1 2 3 31 31 H 1.08994 * 109.47115 * 175.19567 * 1 2 3 32 32 H 1.08998 * 109.47134 * 120.00557 * 2 1 3 33 33 H 1.08994 * 109.47002 * 60.00444 * 3 2 1 34 34 H 1.09001 * 109.46943 * 180.02562 * 3 2 1 35 35 H 1.09004 * 109.47237 * 300.00239 * 3 2 1 36 36 H 1.08999 * 117.49749 * 214.97989 * 6 4 2 37 37 H 1.08996 * 117.50021 * 359.97438 * 6 4 2 38 38 H 0.97000 * 120.00622 * 359.97438 * 11 9 7 39 39 H 1.09003 * 110.40538 * 205.97022 * 16 14 12 40 40 H 1.09006 * 110.41078 * 328.40289 * 16 14 12 41 41 H 0.96999 * 120.00310 * 180.02562 * 21 20 18 42 42 H 1.09006 * 110.40287 * 281.07113 * 26 17 16 43 43 H 1.09004 * 110.40522 * 158.64587 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 1 1.5076 -0.4948 -2.1730 6 6 3.5436 -0.9869 -1.3473 7 6 2.5779 -2.1428 -1.0743 8 1 2.3998 -2.8515 -1.8830 9 6 2.5654 -2.7253 0.3156 10 8 1.6424 -2.4862 1.0651 11 7 3.5800 -3.5119 0.7257 12 6 3.5676 -4.0786 2.0767 13 1 2.7953 -3.6913 2.7412 14 6 4.9160 -4.4442 2.7003 15 1 5.8364 -4.2152 2.1631 16 6 4.9968 -4.5706 4.2369 17 7 4.6218 -6.0221 4.4770 18 6 5.1712 -6.8882 5.3843 19 1 4.9668 -7.9463 5.3131 20 6 5.9909 -6.4061 6.3955 21 7 6.0822 -5.1103 6.6072 22 14 6.9645 -7.5966 7.4560 23 1 8.2917 -7.8401 6.8360 24 1 7.1498 -7.0156 8.8100 25 1 6.2259 -8.8802 7.5649 26 6 3.5261 -6.2873 3.5157 27 6 3.9520 -5.5519 2.2268 28 1 4.1542 -6.1479 1.3369 29 1 -0.3634 0.5866 -0.8437 30 1 -0.3633 0.4374 0.9299 31 1 -0.3633 -1.0240 -0.0861 32 1 1.8934 -0.5139 0.8899 33 1 1.6767 1.9563 0.8900 34 1 3.1300 1.4425 -0.0005 35 1 1.6766 1.9564 -0.8900 36 1 4.0003 -0.9356 -2.3357 37 1 4.1695 -0.6474 -0.5221 38 1 4.3182 -3.7035 0.1262 39 1 6.0125 -4.3762 4.5813 40 1 4.2955 -3.8845 4.7121 41 1 6.6553 -4.7734 7.3135 42 1 2.5856 -5.8835 3.8907 43 1 3.4342 -7.3575 3.3300 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001026128733.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:04:17 Heat of formation + Delta-G solvation = 21.825869 kcal Electronic energy + Delta-G solvation = -21623.263083 eV Core-core repulsion = 18476.998365 eV Total energy + Delta-G solvation = -3146.264717 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.38380 -40.08950 -38.07571 -35.95601 -34.59482 -33.93632 -31.97222 -28.92934 -27.98927 -27.73331 -25.57807 -23.91205 -23.25985 -21.96306 -21.38884 -20.84144 -20.44485 -18.86021 -17.77181 -17.62275 -16.85906 -16.70777 -15.85949 -15.45579 -15.19524 -14.94141 -14.76888 -14.63446 -14.22446 -13.94450 -13.71822 -13.34420 -13.24437 -13.11642 -12.95637 -12.93057 -12.71712 -12.21642 -12.08396 -12.05618 -12.03108 -11.84470 -11.65914 -11.54641 -11.07251 -10.94695 -10.88139 -10.74627 -10.60338 -9.67135 -8.95987 -7.91363 -5.26596 1.46643 1.48635 1.53558 1.57569 1.96512 2.48403 2.75828 2.86477 3.28738 3.49817 3.59515 3.78910 3.83221 3.90588 3.94079 4.09817 4.14076 4.27378 4.35833 4.46219 4.50068 4.52587 4.76489 4.81350 4.84534 4.88578 4.94495 4.96512 4.99661 5.06220 5.07743 5.23267 5.25786 5.34836 5.39067 5.43388 5.49453 5.53903 5.62789 5.64293 6.10895 6.56858 6.94483 7.27373 7.64328 8.43772 9.22919 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.034560 B = 0.003240 C = 0.003170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 809.997090 B = 8639.878809 C = 8831.393910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.082 4.082 3 C -0.140 4.140 4 C -0.115 4.115 5 H 0.132 0.868 6 C -0.141 4.141 7 C -0.190 4.190 8 H 0.155 0.845 9 C 0.539 3.461 10 O -0.570 6.570 11 N -0.681 5.681 12 C 0.117 3.883 13 H 0.102 0.898 14 C -0.177 4.177 15 H 0.125 0.875 16 C 0.187 3.813 17 N -0.623 5.623 18 C -0.240 4.240 19 H 0.083 0.917 20 C -0.064 4.064 21 N -0.949 5.949 22 Si 0.982 3.018 23 H -0.283 1.283 24 H -0.295 1.295 25 H -0.268 1.268 26 C 0.151 3.849 27 C -0.166 4.166 28 H 0.135 0.865 29 H 0.068 0.932 30 H 0.041 0.959 31 H 0.041 0.959 32 H 0.055 0.945 33 H 0.046 0.954 34 H 0.055 0.945 35 H 0.069 0.931 36 H 0.134 0.866 37 H 0.089 0.911 38 H 0.417 0.583 39 H 0.063 0.937 40 H 0.003 0.997 41 H 0.250 0.750 42 H 0.015 0.985 43 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.912 9.207 -21.133 23.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.101 4.101 3 C -0.197 4.197 4 C -0.133 4.133 5 H 0.150 0.850 6 C -0.178 4.178 7 C -0.211 4.211 8 H 0.173 0.827 9 C 0.327 3.673 10 O -0.448 6.448 11 N -0.331 5.331 12 C 0.010 3.990 13 H 0.120 0.880 14 C -0.198 4.198 15 H 0.143 0.857 16 C 0.062 3.938 17 N -0.348 5.348 18 C -0.369 4.369 19 H 0.101 0.899 20 C -0.258 4.258 21 N -0.597 5.597 22 Si 0.810 3.190 23 H -0.210 1.210 24 H -0.222 1.222 25 H -0.193 1.193 26 C 0.025 3.975 27 C -0.187 4.187 28 H 0.153 0.847 29 H 0.087 0.913 30 H 0.061 0.939 31 H 0.060 0.940 32 H 0.073 0.927 33 H 0.065 0.935 34 H 0.074 0.926 35 H 0.088 0.912 36 H 0.152 0.848 37 H 0.107 0.893 38 H 0.254 0.746 39 H 0.082 0.918 40 H 0.021 0.979 41 H 0.059 0.941 42 H 0.033 0.967 43 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -5.441 9.333 -20.392 23.077 hybrid contribution 0.758 -0.719 1.051 1.482 sum -4.683 8.614 -19.340 21.683 Atomic orbital electron populations 1.21629 0.94905 1.01043 1.01265 1.20867 0.96363 0.96166 0.96691 1.21780 1.00951 0.95053 1.01947 1.22480 0.97018 0.93677 1.00136 0.84996 1.23194 0.92276 0.97655 1.04691 1.22319 1.10465 0.94133 0.94156 0.82717 1.20397 0.80859 0.77173 0.88862 1.90680 1.36568 1.60289 1.57303 1.45247 1.24710 1.49571 1.13591 1.21369 0.97876 0.94284 0.85513 0.87996 1.24263 0.94257 1.04306 0.96935 0.85677 1.21457 0.99189 0.84231 0.88926 1.46409 1.38403 1.09056 1.40945 1.19440 1.23599 0.89385 1.04444 0.89935 1.25708 1.02890 0.97790 0.99380 1.70085 1.42454 1.12833 1.34360 0.85034 0.78666 0.78097 0.77250 1.21005 1.22204 1.19288 1.21191 0.89947 0.98148 0.88179 1.24283 1.04179 0.90513 0.99742 0.84697 0.91347 0.93944 0.93976 0.92686 0.93451 0.92637 0.91217 0.84811 0.89263 0.74585 0.91849 0.97912 0.94132 0.96702 0.91843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.77 9.13 71.98 0.66 -2.11 16 2 C -0.08 -1.75 2.28 -10.79 -0.02 -1.77 16 3 C -0.14 -2.41 9.10 71.98 0.66 -1.76 16 4 C -0.11 -1.81 5.04 -10.80 -0.05 -1.87 16 5 H 0.13 1.52 8.14 -2.39 -0.02 1.50 16 6 C -0.14 -1.78 9.60 30.62 0.29 -1.49 16 7 C -0.19 -3.17 6.16 -11.51 -0.07 -3.24 16 8 H 0.16 1.80 8.14 -2.39 -0.02 1.78 16 9 C 0.54 14.10 6.87 87.66 0.60 14.70 16 10 O -0.57 -20.04 13.87 -3.02 -0.04 -20.09 16 11 N -0.68 -16.88 5.56 -442.53 -2.46 -19.34 16 12 C 0.12 3.88 5.97 44.99 0.27 4.15 16 13 H 0.10 4.07 7.40 -2.39 -0.02 4.05 16 14 C -0.18 -6.55 6.96 -9.89 -0.07 -6.62 16 15 H 0.13 4.06 8.14 -2.39 -0.02 4.04 16 16 C 0.19 9.32 5.95 85.79 0.51 9.84 16 17 N -0.62 -32.83 3.45 -678.14 -2.34 -35.17 16 18 C -0.24 -13.63 10.36 84.03 0.87 -12.76 16 19 H 0.08 4.47 7.85 -2.91 -0.02 4.44 16 20 C -0.06 -3.68 5.41 84.86 0.46 -3.22 16 21 N -0.95 -57.60 10.79 21.65 0.23 -57.37 16 22 Si 0.98 45.77 29.57 68.60 2.03 47.80 16 23 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 24 H -0.30 -13.89 7.11 99.48 0.71 -13.18 16 25 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 26 C 0.15 6.46 7.05 86.53 0.61 7.07 16 27 C -0.17 -5.70 7.06 -9.89 -0.07 -5.77 16 28 H 0.14 3.82 8.14 -2.39 -0.02 3.81 16 29 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 30 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 31 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 32 H 0.05 1.60 5.34 -2.39 -0.01 1.59 16 33 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 34 H 0.05 0.91 7.87 -2.39 -0.02 0.89 16 35 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 36 H 0.13 0.92 8.14 -2.39 -0.02 0.90 16 37 H 0.09 1.36 8.11 -2.39 -0.02 1.34 16 38 H 0.42 7.49 8.83 -92.71 -0.82 6.67 16 39 H 0.06 3.53 6.50 -2.39 -0.02 3.51 16 40 H 0.00 0.15 8.14 -2.38 -0.02 0.13 16 41 H 0.25 14.66 8.31 -92.71 -0.77 13.89 16 42 H 0.02 0.67 8.14 -2.38 -0.02 0.66 16 43 H 0.06 2.53 8.14 -2.38 -0.02 2.52 16 Total: -1.00 -71.23 347.56 2.23 -69.00 By element: Atomic # 1 Polarization: 19.84 SS G_CDS: 0.17 Total: 20.01 kcal Atomic # 6 Polarization: -9.49 SS G_CDS: 4.64 Total: -4.85 kcal Atomic # 7 Polarization: -107.31 SS G_CDS: -4.57 Total: -111.88 kcal Atomic # 8 Polarization: -20.04 SS G_CDS: -0.04 Total: -20.09 kcal Atomic # 14 Polarization: 45.77 SS G_CDS: 2.03 Total: 47.80 kcal Total: -71.23 2.23 -69.00 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026128733.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.827 kcal (2) G-P(sol) polarization free energy of solvation -71.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.001 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds