Wall clock time and date at job start Tue Mar 31 2020 00:04:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53006 * 109.46904 * 2 1 4 4 C 1.53000 * 109.47450 * 119.99939 * 2 1 3 5 5 H 1.08994 * 115.54782 * 274.32768 * 4 2 1 6 6 C 1.53001 * 117.51844 * 128.62958 * 4 2 1 7 7 C 1.52993 * 117.49727 * 59.99964 * 4 2 1 8 8 H 1.09004 * 117.49927 * 0.02562 * 7 4 2 9 9 C 1.50701 * 117.49840 * 215.00364 * 7 4 2 10 10 O 1.21282 * 119.99918 * 359.97438 * 9 7 4 11 11 N 1.34777 * 119.99643 * 180.02562 * 9 7 4 12 12 C 1.46506 * 119.99597 * 179.97438 * 11 9 7 13 13 H 1.09002 * 115.51496 * 9.57894 * 12 11 9 14 14 C 1.57266 * 116.89755 * 223.09774 * 12 11 9 15 15 H 1.09001 * 120.68345 * 3.42140 * 14 12 11 16 16 C 1.54395 * 118.11080 * 161.54681 * 14 12 11 17 17 N 1.48148 * 104.72058 * 86.04550 * 16 14 12 18 18 C 1.36934 * 127.83400 * 140.35611 * 17 16 14 19 19 H 1.08004 * 120.00250 * 195.61567 * 18 17 16 20 20 C 1.38816 * 120.00098 * 15.61670 * 18 17 16 21 21 N 1.31612 * 120.00108 * 9.10877 * 20 18 17 22 22 Si 1.86803 * 119.99782 * 189.10834 * 20 18 17 23 23 H 1.48494 * 109.47343 * 359.97438 * 22 20 18 24 24 H 1.48493 * 109.47135 * 120.00333 * 22 20 18 25 25 H 1.48503 * 109.46985 * 239.99891 * 22 20 18 26 26 C 1.48147 * 104.32426 * 320.35699 * 17 16 14 27 27 C 1.53001 * 117.44171 * 155.00244 * 12 11 9 28 28 H 1.08997 * 119.54139 * 354.27913 * 27 12 11 29 29 H 1.08998 * 109.47020 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.47326 * 299.99910 * 1 2 3 31 31 H 1.08996 * 109.47468 * 59.99625 * 1 2 3 32 32 H 1.09002 * 109.46914 * 240.00379 * 2 1 3 33 33 H 1.08998 * 109.47089 * 180.02562 * 3 2 1 34 34 H 1.09005 * 109.47029 * 299.99943 * 3 2 1 35 35 H 1.08996 * 109.47433 * 60.00352 * 3 2 1 36 36 H 1.08992 * 117.49838 * 145.03032 * 6 4 2 37 37 H 1.09004 * 117.49489 * 0.02562 * 6 4 2 38 38 H 0.96996 * 120.00529 * 0.02562 * 11 9 7 39 39 H 1.08994 * 110.40085 * 327.20467 * 16 14 12 40 40 H 1.08997 * 110.40339 * 204.88929 * 16 14 12 41 41 H 0.96998 * 120.00174 * 179.97438 * 21 20 18 42 42 H 1.09006 * 110.40153 * 158.36930 * 26 17 16 43 43 H 1.08990 * 110.40795 * 280.79986 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 2.1268 -0.1060 2.1447 6 6 3.0743 -1.8313 1.0518 7 6 1.6358 -2.1851 1.4343 8 1 1.0068 -2.6346 0.6658 9 6 1.3880 -2.6661 2.8408 10 8 1.5117 -1.9013 3.7739 11 7 1.0299 -3.9465 3.0618 12 6 0.7896 -4.4143 4.4292 13 1 0.7605 -3.6371 5.1930 14 6 1.3788 -5.8207 4.8140 15 1 1.9847 -6.3831 4.1036 16 6 1.5339 -6.1592 6.3124 17 7 0.2155 -6.7026 6.7139 18 6 -0.0392 -7.7549 7.5524 19 1 -1.0193 -8.2083 7.5677 20 6 0.9624 -8.2388 8.3829 21 7 2.0964 -7.5809 8.4986 22 14 0.7005 -9.8238 9.3362 23 1 -0.6487 -10.3657 9.0346 24 1 1.7326 -10.8155 8.9408 25 1 0.8094 -9.5498 10.7917 26 6 -0.7647 -5.8495 6.0026 27 6 -0.1399 -5.6160 4.6102 28 1 -0.6636 -6.0253 3.7463 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 3.1299 1.4426 -0.0005 34 1 1.6766 1.9564 -0.8900 35 1 1.6767 1.9564 0.8900 36 1 3.8414 -1.9463 1.8175 37 1 3.3919 -2.0476 0.0318 38 1 0.9321 -4.5585 2.3157 39 1 1.7642 -5.2597 6.8833 40 1 2.3130 -6.9083 6.4540 41 1 2.7961 -7.9189 9.0792 42 1 -1.7202 -6.3656 5.9087 43 1 -0.8934 -4.9017 6.5252 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026128734.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:04:21 Heat of formation + Delta-G solvation = 34.414456 kcal Electronic energy + Delta-G solvation = -21193.515322 eV Core-core repulsion = 18047.796487 eV Total energy + Delta-G solvation = -3145.718835 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.12585 -38.59953 -37.35974 -34.40966 -33.54805 -32.54768 -30.18938 -27.45444 -27.14589 -25.98179 -24.51696 -23.10955 -21.63811 -20.47739 -20.19125 -19.69838 -19.20657 -17.26469 -16.85333 -16.28172 -15.33838 -15.04867 -14.71087 -14.49740 -14.21551 -13.64779 -13.39514 -13.26092 -12.87906 -12.74992 -12.62321 -12.44833 -12.23404 -11.59979 -11.52478 -11.44860 -11.39588 -10.99891 -10.93931 -10.84862 -10.46924 -10.38504 -10.28165 -10.17859 -10.14173 -9.76650 -9.71850 -9.17727 -8.74580 -8.23058 -6.86711 -5.79594 -3.14139 2.49605 3.07985 3.37939 3.43662 3.46342 3.63761 4.26301 4.32723 4.46061 4.52027 4.59248 4.77386 4.96135 5.01379 5.07131 5.11308 5.32258 5.36387 5.39233 5.39402 5.47906 5.57903 5.59215 5.62047 5.73232 5.82490 5.83018 5.89804 5.90486 6.01676 6.16962 6.19269 6.26943 6.53233 6.68636 6.82522 6.89695 7.37321 7.54674 7.62212 7.72176 8.20555 8.32789 9.10854 9.73561 10.50733 11.34734 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.051864 B = 0.002812 C = 0.002754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 539.748346 B = 9955.728782 C =10165.878659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.066 4.066 3 C -0.145 4.145 4 C -0.113 4.113 5 H 0.118 0.882 6 C -0.149 4.149 7 C -0.188 4.188 8 H 0.121 0.879 9 C 0.544 3.456 10 O -0.539 6.539 11 N -0.694 5.694 12 C 0.094 3.906 13 H 0.133 0.867 14 C -0.181 4.181 15 H 0.104 0.896 16 C 0.184 3.816 17 N -0.593 5.593 18 C -0.227 4.227 19 H 0.077 0.923 20 C -0.006 4.006 21 N -0.914 5.914 22 Si 0.913 3.087 23 H -0.279 1.279 24 H -0.289 1.289 25 H -0.290 1.290 26 C 0.155 3.845 27 C -0.179 4.179 28 H 0.101 0.899 29 H 0.055 0.945 30 H 0.058 0.942 31 H 0.054 0.946 32 H 0.071 0.929 33 H 0.056 0.944 34 H 0.055 0.945 35 H 0.057 0.943 36 H 0.100 0.900 37 H 0.103 0.897 38 H 0.399 0.601 39 H 0.026 0.974 40 H 0.091 0.909 41 H 0.254 0.746 42 H 0.052 0.948 43 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.459 12.457 -19.588 23.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.085 4.085 3 C -0.202 4.202 4 C -0.131 4.131 5 H 0.136 0.864 6 C -0.186 4.186 7 C -0.209 4.209 8 H 0.139 0.861 9 C 0.330 3.670 10 O -0.416 6.416 11 N -0.341 5.341 12 C -0.012 4.012 13 H 0.151 0.849 14 C -0.203 4.203 15 H 0.122 0.878 16 C 0.058 3.942 17 N -0.317 5.317 18 C -0.355 4.355 19 H 0.095 0.905 20 C -0.203 4.203 21 N -0.560 5.560 22 Si 0.743 3.257 23 H -0.204 1.204 24 H -0.216 1.216 25 H -0.217 1.217 26 C 0.028 3.972 27 C -0.201 4.201 28 H 0.119 0.881 29 H 0.074 0.926 30 H 0.077 0.923 31 H 0.073 0.927 32 H 0.089 0.911 33 H 0.075 0.925 34 H 0.074 0.926 35 H 0.076 0.924 36 H 0.119 0.881 37 H 0.121 0.879 38 H 0.232 0.768 39 H 0.044 0.956 40 H 0.109 0.891 41 H 0.064 0.936 42 H 0.070 0.930 43 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -0.290 12.835 -18.690 22.675 hybrid contribution -0.194 -1.356 0.011 1.370 sum -0.485 11.478 -18.679 21.929 Atomic orbital electron populations 1.21829 0.94806 1.01956 1.01844 1.20743 0.95880 0.96159 0.95705 1.21804 1.01162 0.95356 1.01880 1.22478 1.01062 0.89284 1.00318 0.86382 1.23095 0.90620 1.01992 1.02901 1.22255 1.01381 1.01377 0.95877 0.86061 1.19609 0.76092 0.81647 0.89628 1.90700 1.51425 1.54803 1.44671 1.45297 1.69291 1.11009 1.08516 1.22558 1.03402 0.91286 0.83989 0.84935 1.25466 0.96274 0.96745 1.01769 0.87836 1.21054 0.90217 0.97698 0.85236 1.45193 1.00194 1.33931 1.52363 1.19036 0.98019 1.05152 1.13301 0.90476 1.24917 0.97209 0.99662 0.98551 1.69909 1.06386 1.38607 1.41134 0.86035 0.77439 0.82772 0.79431 1.20365 1.21623 1.21661 1.21134 0.93200 0.94320 0.88570 1.24357 0.94541 1.00685 1.00474 0.88136 0.92638 0.92336 0.92705 0.91104 0.92481 0.92635 0.92388 0.88128 0.87886 0.76752 0.95644 0.89096 0.93562 0.92983 0.95520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 9.03 37.16 0.34 -0.76 16 2 C -0.07 -0.49 3.07 -90.62 -0.28 -0.77 16 3 C -0.14 -0.98 9.18 37.16 0.34 -0.64 16 4 C -0.11 -1.08 4.66 -90.62 -0.42 -1.50 16 5 H 0.12 1.37 7.64 -51.93 -0.40 0.98 16 6 C -0.15 -1.32 9.88 -26.73 -0.26 -1.58 16 7 C -0.19 -1.89 5.39 -91.77 -0.49 -2.39 16 8 H 0.12 0.96 7.61 -51.93 -0.40 0.56 16 9 C 0.54 7.80 7.61 -10.98 -0.08 7.72 16 10 O -0.54 -10.00 15.82 5.56 0.09 -9.91 16 11 N -0.69 -9.53 5.57 -51.56 -0.29 -9.82 16 12 C 0.09 1.61 6.19 -65.61 -0.41 1.21 16 13 H 0.13 2.60 7.40 -51.93 -0.38 2.22 16 14 C -0.18 -3.50 7.26 -86.73 -0.63 -4.13 16 15 H 0.10 1.85 8.14 -51.93 -0.42 1.43 16 16 C 0.18 4.52 5.72 -2.40 -0.01 4.50 16 17 N -0.59 -15.39 3.38 -168.86 -0.57 -15.96 16 18 C -0.23 -6.36 10.35 -15.06 -0.16 -6.52 16 19 H 0.08 2.08 7.85 -52.48 -0.41 1.67 16 20 C -0.01 -0.18 5.40 -17.43 -0.09 -0.27 16 21 N -0.91 -27.04 10.86 55.49 0.60 -26.44 16 22 Si 0.91 22.01 29.56 -169.99 -5.03 16.98 16 23 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 24 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 25 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 26 C 0.15 3.29 7.03 -2.41 -0.02 3.27 16 27 C -0.18 -3.20 6.91 -89.05 -0.62 -3.82 16 28 H 0.10 1.58 8.14 -51.93 -0.42 1.15 16 29 H 0.05 0.42 7.29 -51.93 -0.38 0.04 16 30 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 32 H 0.07 0.46 7.90 -51.93 -0.41 0.05 16 33 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 35 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 37 H 0.10 0.69 8.05 -51.93 -0.42 0.27 16 38 H 0.40 4.28 8.83 -40.82 -0.36 3.92 16 39 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.09 2.47 6.51 -51.93 -0.34 2.14 16 41 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 42 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 43 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 LS Contribution 351.15 15.07 5.29 5.29 Total: -1.00 -32.07 351.15 -9.98 -42.05 By element: Atomic # 1 Polarization: 10.75 SS G_CDS: -7.28 Total: 3.48 kcal Atomic # 6 Polarization: -2.87 SS G_CDS: -2.80 Total: -5.67 kcal Atomic # 7 Polarization: -51.96 SS G_CDS: -0.25 Total: -52.21 kcal Atomic # 8 Polarization: -10.00 SS G_CDS: 0.09 Total: -9.91 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.03 Total: 16.98 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -32.07 -9.98 -42.05 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026128734.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.464 kcal (2) G-P(sol) polarization free energy of solvation -32.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.049 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds