Wall clock time and date at job start Tue Mar 31 2020 00:04:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53006 * 109.46904 * 2 1 4 4 C 1.53000 * 109.47450 * 119.99939 * 2 1 3 5 5 H 1.08994 * 115.54782 * 274.32768 * 4 2 1 6 6 C 1.53001 * 117.51844 * 128.62958 * 4 2 1 7 7 C 1.52993 * 117.49727 * 59.99964 * 4 2 1 8 8 H 1.09004 * 117.49927 * 0.02562 * 7 4 2 9 9 C 1.50701 * 117.49840 * 215.00364 * 7 4 2 10 10 O 1.21282 * 119.99918 * 359.97438 * 9 7 4 11 11 N 1.34777 * 119.99643 * 180.02562 * 9 7 4 12 12 C 1.46506 * 119.99597 * 179.97438 * 11 9 7 13 13 H 1.09002 * 115.51496 * 9.57894 * 12 11 9 14 14 C 1.57266 * 116.89755 * 223.09774 * 12 11 9 15 15 H 1.09001 * 120.68345 * 3.42140 * 14 12 11 16 16 C 1.54395 * 118.11080 * 161.54681 * 14 12 11 17 17 N 1.48148 * 104.72058 * 86.04550 * 16 14 12 18 18 C 1.36934 * 127.83400 * 140.35611 * 17 16 14 19 19 H 1.08004 * 120.00250 * 195.61567 * 18 17 16 20 20 C 1.38816 * 120.00098 * 15.61670 * 18 17 16 21 21 N 1.31612 * 120.00108 * 9.10877 * 20 18 17 22 22 Si 1.86803 * 119.99782 * 189.10834 * 20 18 17 23 23 H 1.48494 * 109.47343 * 359.97438 * 22 20 18 24 24 H 1.48493 * 109.47135 * 120.00333 * 22 20 18 25 25 H 1.48503 * 109.46985 * 239.99891 * 22 20 18 26 26 C 1.48147 * 104.32426 * 320.35699 * 17 16 14 27 27 C 1.53001 * 117.44171 * 155.00244 * 12 11 9 28 28 H 1.08997 * 119.54139 * 354.27913 * 27 12 11 29 29 H 1.08998 * 109.47020 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.47326 * 299.99910 * 1 2 3 31 31 H 1.08996 * 109.47468 * 59.99625 * 1 2 3 32 32 H 1.09002 * 109.46914 * 240.00379 * 2 1 3 33 33 H 1.08998 * 109.47089 * 180.02562 * 3 2 1 34 34 H 1.09005 * 109.47029 * 299.99943 * 3 2 1 35 35 H 1.08996 * 109.47433 * 60.00352 * 3 2 1 36 36 H 1.08992 * 117.49838 * 145.03032 * 6 4 2 37 37 H 1.09004 * 117.49489 * 0.02562 * 6 4 2 38 38 H 0.96996 * 120.00529 * 0.02562 * 11 9 7 39 39 H 1.08994 * 110.40085 * 327.20467 * 16 14 12 40 40 H 1.08997 * 110.40339 * 204.88929 * 16 14 12 41 41 H 0.96998 * 120.00174 * 179.97438 * 21 20 18 42 42 H 1.09006 * 110.40153 * 158.36930 * 26 17 16 43 43 H 1.08990 * 110.40795 * 280.79986 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 2.1268 -0.1060 2.1447 6 6 3.0743 -1.8313 1.0518 7 6 1.6358 -2.1851 1.4343 8 1 1.0068 -2.6346 0.6658 9 6 1.3880 -2.6661 2.8408 10 8 1.5117 -1.9013 3.7739 11 7 1.0299 -3.9465 3.0618 12 6 0.7896 -4.4143 4.4292 13 1 0.7605 -3.6371 5.1930 14 6 1.3788 -5.8207 4.8140 15 1 1.9847 -6.3831 4.1036 16 6 1.5339 -6.1592 6.3124 17 7 0.2155 -6.7026 6.7139 18 6 -0.0392 -7.7549 7.5524 19 1 -1.0193 -8.2083 7.5677 20 6 0.9624 -8.2388 8.3829 21 7 2.0964 -7.5809 8.4986 22 14 0.7005 -9.8238 9.3362 23 1 -0.6487 -10.3657 9.0346 24 1 1.7326 -10.8155 8.9408 25 1 0.8094 -9.5498 10.7917 26 6 -0.7647 -5.8495 6.0026 27 6 -0.1399 -5.6160 4.6102 28 1 -0.6636 -6.0253 3.7463 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 3.1299 1.4426 -0.0005 34 1 1.6766 1.9564 -0.8900 35 1 1.6767 1.9564 0.8900 36 1 3.8414 -1.9463 1.8175 37 1 3.3919 -2.0476 0.0318 38 1 0.9321 -4.5585 2.3157 39 1 1.7642 -5.2597 6.8833 40 1 2.3130 -6.9083 6.4540 41 1 2.7961 -7.9189 9.0792 42 1 -1.7202 -6.3656 5.9087 43 1 -0.8934 -4.9017 6.5252 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001026128734.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:04:20 Heat of formation + Delta-G solvation = 14.852071 kcal Electronic energy + Delta-G solvation = -21194.363611 eV Core-core repulsion = 18047.796487 eV Total energy + Delta-G solvation = -3146.567124 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.27195 -40.04503 -38.37078 -36.04126 -34.41942 -34.08491 -32.03763 -28.95802 -28.02198 -27.76285 -25.75250 -23.79492 -23.25183 -21.97974 -21.27664 -20.83590 -20.55181 -18.88820 -18.28928 -17.63628 -16.76972 -16.16136 -16.07602 -15.57429 -15.52641 -14.98207 -14.88516 -14.65595 -13.97115 -13.83666 -13.61960 -13.46193 -13.34404 -13.18684 -12.98797 -12.91666 -12.75629 -12.16192 -12.12623 -12.03028 -12.02139 -11.89329 -11.67998 -11.54094 -11.23295 -11.04821 -10.93790 -10.82258 -10.69956 -9.65788 -8.95081 -7.93508 -5.31110 1.38962 1.46094 1.46988 1.58343 1.91500 2.47064 2.69968 2.91890 3.26549 3.47636 3.61914 3.76025 3.77426 3.85300 3.91814 4.08276 4.12312 4.18999 4.36151 4.41809 4.46931 4.51377 4.69868 4.78421 4.86201 4.86952 4.91768 4.96347 4.97966 5.06456 5.09488 5.24561 5.26015 5.30521 5.40591 5.43478 5.46647 5.52355 5.57049 5.62057 6.14160 6.52506 6.97723 7.21961 7.64907 8.43441 9.20662 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.051864 B = 0.002812 C = 0.002754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 539.748346 B = 9955.728782 C =10165.878659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.060 4.060 3 C -0.146 4.146 4 C -0.117 4.117 5 H 0.088 0.912 6 C -0.136 4.136 7 C -0.186 4.186 8 H 0.155 0.845 9 C 0.538 3.462 10 O -0.589 6.589 11 N -0.678 5.678 12 C 0.113 3.887 13 H 0.104 0.896 14 C -0.187 4.187 15 H 0.125 0.875 16 C 0.188 3.812 17 N -0.617 5.617 18 C -0.240 4.240 19 H 0.085 0.915 20 C -0.066 4.066 21 N -0.950 5.950 22 Si 0.984 3.016 23 H -0.262 1.262 24 H -0.289 1.289 25 H -0.293 1.293 26 C 0.146 3.854 27 C -0.154 4.154 28 H 0.140 0.860 29 H 0.058 0.942 30 H 0.040 0.960 31 H 0.068 0.932 32 H 0.092 0.908 33 H 0.058 0.942 34 H 0.068 0.932 35 H 0.044 0.956 36 H 0.084 0.916 37 H 0.136 0.864 38 H 0.419 0.581 39 H -0.009 1.009 40 H 0.058 0.942 41 H 0.250 0.750 42 H 0.067 0.933 43 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.439 11.833 -22.910 25.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.078 4.078 3 C -0.203 4.203 4 C -0.136 4.136 5 H 0.106 0.894 6 C -0.173 4.173 7 C -0.207 4.207 8 H 0.173 0.827 9 C 0.327 3.673 10 O -0.469 6.469 11 N -0.327 5.327 12 C 0.006 3.994 13 H 0.122 0.878 14 C -0.208 4.208 15 H 0.143 0.857 16 C 0.062 3.938 17 N -0.341 5.341 18 C -0.369 4.369 19 H 0.103 0.897 20 C -0.259 4.259 21 N -0.598 5.598 22 Si 0.811 3.189 23 H -0.186 1.186 24 H -0.216 1.216 25 H -0.220 1.220 26 C 0.020 3.980 27 C -0.175 4.175 28 H 0.157 0.843 29 H 0.077 0.923 30 H 0.059 0.941 31 H 0.087 0.913 32 H 0.110 0.890 33 H 0.077 0.923 34 H 0.087 0.913 35 H 0.063 0.937 36 H 0.102 0.898 37 H 0.154 0.846 38 H 0.257 0.743 39 H 0.009 0.991 40 H 0.076 0.924 41 H 0.059 0.941 42 H 0.086 0.914 43 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges -1.300 12.209 -22.072 25.257 hybrid contribution 0.099 -1.050 1.092 1.518 sum -1.201 11.158 -20.980 23.793 Atomic orbital electron populations 1.21845 0.94865 1.02119 1.01698 1.20751 0.95752 0.96220 0.95117 1.21814 1.01324 0.95214 1.01936 1.22479 1.01811 0.88993 1.00339 0.89415 1.23205 0.89377 1.00588 1.04111 1.22276 1.03067 1.01819 0.93526 0.82722 1.20440 0.74671 0.81109 0.91038 1.90691 1.53418 1.56086 1.46737 1.45116 1.68803 1.11403 1.07408 1.22076 1.02106 0.89764 0.85484 0.87797 1.25147 0.98113 0.99108 0.98450 0.85692 1.20765 0.89287 0.95145 0.88602 1.45502 1.01629 1.34250 1.52730 1.19458 0.98331 1.05659 1.13420 0.89712 1.25820 0.97059 1.03048 0.99982 1.70118 1.07253 1.40313 1.42077 0.84940 0.77935 0.78586 0.77398 1.18598 1.21606 1.22015 1.21297 0.93344 0.93359 0.89960 1.24256 0.93133 1.00424 0.99659 0.84280 0.92309 0.94076 0.91297 0.88998 0.92275 0.91271 0.93663 0.89783 0.84569 0.74315 0.99103 0.92377 0.94099 0.91420 0.96455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.87 9.03 71.98 0.65 -1.22 16 2 C -0.06 -0.73 3.07 -10.79 -0.03 -0.77 16 3 C -0.15 -1.73 9.18 71.98 0.66 -1.07 16 4 C -0.12 -2.06 4.66 -10.80 -0.05 -2.11 16 5 H 0.09 2.10 7.64 -2.39 -0.02 2.09 16 6 C -0.14 -2.05 9.88 30.59 0.30 -1.74 16 7 C -0.19 -3.27 5.39 -11.54 -0.06 -3.33 16 8 H 0.16 1.72 7.61 -2.38 -0.02 1.70 16 9 C 0.54 14.84 7.61 87.66 0.67 15.51 16 10 O -0.59 -22.36 15.82 -3.04 -0.05 -22.40 16 11 N -0.68 -17.14 5.57 -435.43 -2.42 -19.57 16 12 C 0.11 3.82 6.19 46.49 0.29 4.11 16 13 H 0.10 4.22 7.40 -2.39 -0.02 4.20 16 14 C -0.19 -7.11 7.26 -8.27 -0.06 -7.18 16 15 H 0.13 4.25 8.14 -2.39 -0.02 4.23 16 16 C 0.19 9.63 5.72 86.54 0.50 10.12 16 17 N -0.62 -32.59 3.38 -688.15 -2.33 -34.91 16 18 C -0.24 -13.60 10.35 84.03 0.87 -12.73 16 19 H 0.09 4.55 7.85 -2.91 -0.02 4.52 16 20 C -0.07 -3.78 5.40 84.86 0.46 -3.32 16 21 N -0.95 -58.36 10.86 21.65 0.24 -58.12 16 22 Si 0.98 45.81 29.56 68.60 2.03 47.84 16 23 H -0.26 -11.35 7.11 99.48 0.71 -10.64 16 24 H -0.29 -13.36 7.11 99.48 0.71 -12.65 16 25 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 26 C 0.15 6.16 7.03 86.53 0.61 6.77 16 27 C -0.15 -5.19 6.91 -9.78 -0.07 -5.25 16 28 H 0.14 3.71 8.14 -2.39 -0.02 3.69 16 29 H 0.06 0.70 7.29 -2.39 -0.02 0.68 16 30 H 0.04 0.65 8.14 -2.38 -0.02 0.63 16 31 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 32 H 0.09 0.79 7.90 -2.39 -0.02 0.77 16 33 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 34 H 0.07 0.64 8.14 -2.38 -0.02 0.62 16 35 H 0.04 0.64 8.14 -2.39 -0.02 0.62 16 36 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 37 H 0.14 1.20 8.05 -2.38 -0.02 1.18 16 38 H 0.42 7.34 8.83 -92.71 -0.82 6.52 16 39 H -0.01 -0.50 8.14 -2.39 -0.02 -0.52 16 40 H 0.06 3.33 6.51 -2.39 -0.02 3.31 16 41 H 0.25 14.81 8.31 -92.71 -0.77 14.04 16 42 H 0.07 2.62 8.14 -2.38 -0.02 2.60 16 43 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 Total: -1.00 -73.55 351.15 2.36 -71.18 By element: Atomic # 1 Polarization: 18.03 SS G_CDS: 0.17 Total: 18.20 kcal Atomic # 6 Polarization: -6.95 SS G_CDS: 4.73 Total: -2.22 kcal Atomic # 7 Polarization: -108.09 SS G_CDS: -4.52 Total: -112.60 kcal Atomic # 8 Polarization: -22.36 SS G_CDS: -0.05 Total: -22.40 kcal Atomic # 14 Polarization: 45.81 SS G_CDS: 2.03 Total: 47.84 kcal Total: -73.55 2.36 -71.18 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026128734.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.037 kcal (2) G-P(sol) polarization free energy of solvation -73.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.185 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds