Wall clock time and date at job start Tue Mar 31 2020 00:40:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.50696 * 119.99814 * 2 1 4 4 C 1.32991 * 119.99627 * 179.97438 * 2 1 3 5 5 C 1.47104 * 119.99556 * 179.71911 * 4 2 1 6 6 O 1.21613 * 120.00031 * 0.28106 * 5 4 2 7 7 N 1.34777 * 120.00058 * 180.27387 * 5 4 2 8 8 C 1.49629 * 126.07071 * 359.69986 * 7 5 4 9 9 C 1.51762 * 102.37889 * 154.30083 * 8 7 5 10 10 H 1.09002 * 111.73243 * 288.23895 * 9 8 7 11 11 C 1.51564 * 123.23319 * 151.77972 * 9 8 7 12 12 C 1.56339 * 101.80810 * 208.16597 * 11 9 8 13 13 C 1.55999 * 105.77249 * 25.43269 * 12 11 9 14 14 H 1.09000 * 110.53075 * 248.34204 * 13 12 11 15 15 N 1.46508 * 110.64509 * 125.64624 * 13 12 11 16 16 C 1.36938 * 119.99598 * 90.36979 * 15 13 12 17 17 H 1.07994 * 120.00035 * 359.97438 * 16 15 13 18 18 C 1.38808 * 119.99591 * 180.02562 * 16 15 13 19 19 N 1.31622 * 120.00064 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 119.99961 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.47259 * 359.97438 * 20 18 16 22 22 H 1.48508 * 109.47346 * 119.99862 * 20 18 16 23 23 H 1.48498 * 109.47172 * 239.99709 * 20 18 16 24 24 C 1.49708 * 103.98520 * 6.96748 * 13 12 11 25 25 H 1.08991 * 108.55288 * 76.80084 * 24 13 12 26 26 C 1.49286 * 126.07733 * 180.02562 * 7 5 4 27 27 H 1.09000 * 109.46984 * 270.00046 * 1 2 3 28 28 H 1.09000 * 109.47171 * 29.99690 * 1 2 3 29 29 H 1.08993 * 109.47264 * 150.00185 * 1 2 3 30 30 H 1.09001 * 109.46858 * 240.00381 * 3 2 1 31 31 H 1.09001 * 109.47179 * 0.02562 * 3 2 1 32 32 H 1.08995 * 109.46910 * 120.00566 * 3 2 1 33 33 H 1.08002 * 120.00602 * 0.02562 * 4 2 1 34 34 H 1.09006 * 110.79944 * 272.62876 * 8 7 5 35 35 H 1.08998 * 110.80767 * 36.12858 * 8 7 5 36 36 H 1.08988 * 110.96670 * 90.03473 * 11 9 8 37 37 H 1.08996 * 110.96102 * 326.28413 * 11 9 8 38 38 H 1.09007 * 110.19020 * 266.36250 * 12 11 9 39 39 H 1.09002 * 110.26041 * 144.54727 * 12 11 9 40 40 H 0.96992 * 119.99985 * 270.36425 * 15 13 12 41 41 H 0.97005 * 119.99667 * 180.02562 * 19 18 16 42 42 H 1.09003 * 110.39338 * 292.38195 * 26 7 5 43 43 H 1.09007 * 110.39508 * 54.66238 * 26 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2605 1.3051 0.0000 4 6 2.1720 -1.1518 0.0005 5 6 3.6430 -1.1518 -0.0057 6 8 4.2510 -0.0986 -0.0062 7 7 4.3169 -2.3190 -0.0108 8 6 3.7100 -3.6867 -0.0044 9 6 4.7933 -4.5263 -0.6562 10 1 4.8738 -4.3230 -1.7240 11 6 4.9897 -6.0006 -0.3646 12 6 6.5205 -6.1776 -0.6281 13 6 7.1561 -4.7719 -0.3960 14 1 7.5187 -4.3565 -1.3362 15 7 8.2438 -4.8519 0.5822 16 6 9.5260 -5.0866 0.1625 17 1 9.7353 -5.2130 -0.8894 18 6 10.5565 -5.1629 1.0894 19 7 10.3013 -5.0092 2.3714 20 14 12.3055 -5.4837 0.5171 21 1 12.3256 -5.6192 -0.9615 22 1 13.1749 -4.3499 0.9226 23 1 12.8066 -6.7373 1.1355 24 6 6.0269 -3.9485 0.1408 25 1 5.8722 -4.2123 1.1870 26 6 5.8013 -2.4770 -0.0168 27 1 -0.3633 0.0000 1.0277 28 1 -0.3633 0.8900 -0.5138 29 1 -0.3633 -0.8899 -0.5138 30 1 2.8871 1.3628 -0.8900 31 1 1.5522 2.1336 0.0005 32 1 2.8872 1.3628 0.8899 33 1 1.6320 -2.0871 0.0005 34 1 3.5193 -4.0208 1.0155 35 1 2.7955 -3.7072 -0.5972 36 1 4.4030 -6.6147 -1.0475 37 1 4.7437 -6.2291 0.6723 38 1 6.6905 -6.5024 -1.6546 39 1 6.9424 -6.9010 0.0696 40 1 8.0558 -4.7386 1.5269 41 1 11.0216 -5.0622 3.0191 42 1 6.2166 -2.1284 -0.9625 43 1 6.2448 -1.9313 0.8161 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026182331.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:40:16 Heat of formation + Delta-G solvation = 3.976273 kcal Electronic energy + Delta-G solvation = -21817.591466 eV Core-core repulsion = 18670.552732 eV Total energy + Delta-G solvation = -3147.038734 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.49551 -38.87631 -35.70899 -35.07234 -33.36646 -30.89896 -30.08253 -28.43138 -28.02345 -27.46440 -25.39850 -23.33003 -22.91028 -20.46428 -19.99770 -19.12954 -18.12152 -17.17846 -16.75064 -16.19379 -15.23207 -14.85720 -14.61654 -14.30571 -14.17018 -13.91241 -13.68410 -13.40409 -13.05345 -12.81720 -12.52094 -12.43625 -12.27013 -11.85777 -11.79955 -11.71284 -11.50501 -11.36520 -10.97879 -10.79755 -10.76985 -10.45411 -10.10862 -10.10118 -9.77531 -9.60716 -9.43258 -9.29683 -8.91394 -8.45766 -6.97181 -5.77311 -3.06378 1.30966 3.01643 3.36843 3.43462 3.49326 3.51409 4.17611 4.49482 4.58398 4.66208 4.89728 4.96970 5.10243 5.22430 5.27001 5.31479 5.37525 5.44565 5.50902 5.56345 5.57582 5.63837 5.77449 5.77936 5.89345 5.92241 5.95627 6.05455 6.08649 6.17078 6.23734 6.34424 6.35864 6.39923 6.49731 6.53842 6.65279 6.79631 7.05860 7.66225 7.71124 8.31923 8.40950 9.52399 10.09035 10.43607 11.45233 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.027749 B = 0.003614 C = 0.003312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1008.801615 B = 7745.471377 C = 8453.038759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.040 4.040 3 C -0.116 4.116 4 C -0.229 4.229 5 C 0.557 3.443 6 O -0.545 6.545 7 N -0.623 5.623 8 C 0.119 3.881 9 C -0.129 4.129 10 H 0.086 0.914 11 C -0.100 4.100 12 C -0.144 4.144 13 C 0.199 3.801 14 H 0.056 0.944 15 N -0.720 5.720 16 C -0.239 4.239 17 H 0.071 0.929 18 C -0.013 4.013 19 N -0.932 5.932 20 Si 0.906 3.094 21 H -0.280 1.280 22 H -0.292 1.292 23 H -0.292 1.292 24 C -0.120 4.120 25 H 0.074 0.926 26 C 0.135 3.865 27 H 0.077 0.923 28 H 0.071 0.929 29 H 0.069 0.931 30 H 0.082 0.918 31 H 0.050 0.950 32 H 0.082 0.918 33 H 0.124 0.876 34 H 0.072 0.928 35 H 0.074 0.926 36 H 0.059 0.941 37 H 0.066 0.934 38 H 0.054 0.946 39 H 0.074 0.926 40 H 0.384 0.616 41 H 0.255 0.745 42 H 0.067 0.933 43 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.892 4.439 -5.600 22.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.042 4.042 3 C -0.172 4.172 4 C -0.249 4.249 5 C 0.349 3.651 6 O -0.426 6.426 7 N -0.357 5.357 8 C -0.003 4.003 9 C -0.148 4.148 10 H 0.104 0.896 11 C -0.138 4.138 12 C -0.185 4.185 13 C 0.087 3.913 14 H 0.074 0.926 15 N -0.360 5.360 16 C -0.370 4.370 17 H 0.089 0.911 18 C -0.209 4.209 19 N -0.580 5.580 20 Si 0.737 3.263 21 H -0.205 1.205 22 H -0.219 1.219 23 H -0.219 1.219 24 C -0.140 4.140 25 H 0.092 0.908 26 C 0.014 3.986 27 H 0.096 0.904 28 H 0.090 0.910 29 H 0.088 0.912 30 H 0.101 0.899 31 H 0.069 0.931 32 H 0.101 0.899 33 H 0.142 0.858 34 H 0.090 0.910 35 H 0.093 0.907 36 H 0.078 0.922 37 H 0.084 0.916 38 H 0.073 0.927 39 H 0.092 0.908 40 H 0.218 0.782 41 H 0.064 0.936 42 H 0.086 0.914 43 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -20.418 5.058 -5.678 21.788 hybrid contribution 0.910 -0.406 0.139 1.006 sum -19.508 4.652 -5.538 20.806 Atomic orbital electron populations 1.21001 0.91204 1.03124 1.02818 1.22563 0.95803 0.95542 0.90245 1.21038 0.99042 0.92581 1.04528 1.22395 0.93063 0.98749 1.10735 1.18198 0.87842 0.82257 0.76775 1.90778 1.70589 1.30130 1.51073 1.49765 1.07471 1.05379 1.73082 1.21804 0.96084 0.81744 1.00621 1.22635 0.95670 0.96260 1.00251 0.89552 1.21857 0.97648 0.93211 1.01114 1.23795 0.92809 1.00781 1.01083 1.19941 0.86693 0.91093 0.93524 0.92638 1.42505 1.02879 1.85622 1.05012 1.19295 0.84293 1.40809 0.92641 0.91077 1.24747 0.98052 1.02796 0.95328 1.69673 1.31457 1.56909 1.00006 0.86136 0.85098 0.77397 0.77669 1.20544 1.21879 1.21915 1.22100 0.97162 0.93493 1.01229 0.90792 1.20936 0.78962 0.96285 1.02388 0.90408 0.91038 0.91225 0.89910 0.93130 0.89940 0.85846 0.90986 0.90737 0.92207 0.91562 0.92672 0.90766 0.78172 0.93555 0.91429 0.90758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.82 9.98 36.01 0.36 -0.46 16 2 C -0.04 -0.40 6.11 -101.17 -0.62 -1.02 16 3 C -0.12 -1.28 8.33 36.00 0.30 -0.98 16 4 C -0.23 -2.60 9.10 -37.81 -0.34 -2.95 16 5 C 0.56 8.43 7.79 -12.66 -0.10 8.33 16 6 O -0.55 -9.88 13.43 5.27 0.07 -9.81 16 7 N -0.62 -9.04 3.42 -172.81 -0.59 -9.64 16 8 C 0.12 1.37 6.32 -2.93 -0.02 1.35 16 9 C -0.13 -1.64 3.15 -89.33 -0.28 -1.92 16 10 H 0.09 1.11 8.14 -51.93 -0.42 0.68 16 11 C -0.10 -1.27 6.59 -25.66 -0.17 -1.44 16 12 C -0.14 -2.36 6.74 -23.33 -0.16 -2.52 16 13 C 0.20 3.79 3.44 -67.95 -0.23 3.56 16 14 H 0.06 1.10 8.09 -51.93 -0.42 0.68 16 15 N -0.72 -17.60 5.11 -53.45 -0.27 -17.88 16 16 C -0.24 -6.54 9.96 -15.06 -0.15 -6.69 16 17 H 0.07 1.90 7.83 -52.49 -0.41 1.48 16 18 C -0.01 -0.38 5.50 -17.43 -0.10 -0.47 16 19 N -0.93 -28.04 13.06 55.49 0.72 -27.32 16 20 Si 0.91 22.36 29.55 -169.99 -5.02 17.33 16 21 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 22 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 23 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 24 C -0.12 -1.94 2.22 -91.24 -0.20 -2.15 16 25 H 0.07 1.28 7.72 -51.93 -0.40 0.88 16 26 C 0.14 2.23 6.82 -4.13 -0.03 2.21 16 27 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.07 0.40 8.05 -51.93 -0.42 -0.02 16 29 H 0.07 0.39 8.07 -51.93 -0.42 -0.02 16 30 H 0.08 1.05 7.21 -51.93 -0.37 0.68 16 31 H 0.05 0.43 7.94 -51.93 -0.41 0.02 16 32 H 0.08 1.06 7.23 -51.93 -0.38 0.69 16 33 H 0.12 1.12 6.89 -52.49 -0.36 0.75 16 34 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.07 0.68 7.20 -51.93 -0.37 0.31 16 36 H 0.06 0.65 8.14 -51.94 -0.42 0.23 16 37 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 38 H 0.05 0.85 8.14 -51.92 -0.42 0.43 16 39 H 0.07 1.39 7.98 -51.93 -0.41 0.97 16 40 H 0.38 10.06 7.68 -40.82 -0.31 9.75 16 41 H 0.25 7.42 8.31 -40.82 -0.34 7.08 16 42 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 43 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 LS Contribution 343.31 15.07 5.17 5.17 Total: -1.00 -31.38 343.31 -8.87 -40.25 By element: Atomic # 1 Polarization: 14.24 SS G_CDS: -7.21 Total: 7.03 kcal Atomic # 6 Polarization: -3.42 SS G_CDS: -1.74 Total: -5.15 kcal Atomic # 7 Polarization: -54.69 SS G_CDS: -0.14 Total: -54.83 kcal Atomic # 8 Polarization: -9.88 SS G_CDS: 0.07 Total: -9.81 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.02 Total: 17.33 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -31.38 -8.87 -40.25 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026182331.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.231 kcal (2) G-P(sol) polarization free energy of solvation -31.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.254 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds